Rh2DG012500

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000125
Physical Location & Seq
Forward (+)
680733 .. 681176
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG012500.1

Sequence Viewer

Length: 444 bp
ATGGACAAAGGAATCGAAGATATATGCAATATAAATTTCGAAAAAGGAATATGCATCATAGTTTCTTTTGACTTCACAAAAGAAGTGTTCACCTTGATTTCCCTTCCCATATTACAAAGCTCGGGTATGTGCTTACACTTGATTACTTTGCGGGGATCTATTGCTATTGTTGATACTTCATCAGATACGAAAATTGAGATATGGGTAATGAAAGATTACAACAGAAAGCAGTGGACACTAGATTACACCATTAATACGCTTGAATCAGGTTTTCTGTCTAACGTTCCGTTTGTTGTTTGTGAATGGGAACATGGCATATTTTTCACAGAAGAATTGGGCGACACATCGTTCTTTTTTTATTTAAGACGTGTTACGCGCATTACTGAAACTGAGTTTTGGCAATGTGTGCGAGTCTTTACTATGAAAGGGGGCTTGATTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
DUF4219 F-box FBA_3 Retrotran_gag_2

Protein Analysis

147

Amino Acids

17.04

Weight (kDa)

4.87

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 17 - 111 4.1e-07 F-box associated beta propeller domain
FBA_3 PF08268 18 - 82 8.8e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 376
AciI CCGC 1 cut(s) 151
AclI AACGTT 1 cut(s) 282
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 1 cut(s) 263
AjiI CACGTC 1 cut(s) 368
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
AlwI GGATC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 121
ApoI RAATTY 1 cut(s) 34
AseI ATTAAT 1 cut(s) 252
AspLEI GCGC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 121
BfaI CTAG 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 368
BmsI GCATC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 407
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 39
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 1 cut(s) 376
BspPI GGATC 1 cut(s) 163
BspT104I TTCGAA 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 407
BssMI GATC 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 406
BstBI TTCGAA 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 390
BstFNI CGCG 1 cut(s) 376
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstUI CGCG 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtrI CACGTC 1 cut(s) 368
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 236
CfoI GCGC 1 cut(s) 378
CviAII CATG 1 cut(s) 311
CviJI RGCY 2 cut(s) 120, 432
CviKI_1 RGCY 2 cut(s) 120, 432
DdeI CTNAG 1 cut(s) 390
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 56
FaeI CATG 1 cut(s) 314
FatI CATG 1 cut(s) 310
FauI CCCGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 377
HhaI GCGC 1 cut(s) 378
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HinfI GANTC 3 cut(s) 12, 263, 411
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 90, 234
Hpy188I TCNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 90, 234
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 282, 367
HpyCH4V TGCA 2 cut(s) 27, 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 2 cut(s) 282, 367
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 155
LpnPI CCDG 1 cut(s) 252
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 239
MaeII ACGT 2 cut(s) 282, 367
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 2 cut(s) 29, 341
MflI RGATCY 1 cut(s) 155
MluCI AATT 3 cut(s) 34, 192, 332
MlyI GAGTC 1 cut(s) 420
Mph1103I ATGCAT 1 cut(s) 56
MseI TTAA 2 cut(s) 252, 362
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 406
NdeII GATC 1 cut(s) 155
NlaIII CATG 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 56
NspV TTCGAA 1 cut(s) 39
PfeI GAWTC 2 cut(s) 12, 263
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PshBI ATTAAT 1 cut(s) 252
Psp1406I AACGTT 1 cut(s) 282
PsuI RGATCY 1 cut(s) 155
SaqAI TTAA 2 cut(s) 252, 362
Sau3AI GATC 1 cut(s) 155
SchI GAGTC 1 cut(s) 420
SetI ASST 5 cut(s) 95, 122, 271, 285, 370
SfaNI GCATC 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 39
Sse9I AATT 3 cut(s) 34, 192, 332
SsiI CCGC 1 cut(s) 151
SspMI CTAG 1 cut(s) 239
TaiI ACGT 2 cut(s) 285, 370
TaqI TCGA 2 cut(s) 15, 39
TasI AATT 3 cut(s) 34, 192, 332
TfiI GAWTC 2 cut(s) 12, 263
Tru1I TTAA 2 cut(s) 252, 362
Tru9I TTAA 2 cut(s) 252, 362
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 168, 224, 437
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 1 cut(s) 236
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 1 cut(s) 34
XspI CTAG 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.