Rroxscaffold_5G00370300

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000125
Physical Location & Seq
Forward (+)
51941651 .. 51942810
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370300.1

Sequence Viewer

Length: 639 bp
ATGCCCAATGATATCATTGTGGATATCCTTATGAGACTGCCCTTGAAATCACTTTGTCGTCTCAGATGTGTCTCCAAGACCTGTCTGAACATGGTTGATTCCCCCTTTTTCACACCATTGCATACGGCACGTTTACTTAAGTTTTCAACCGACTACTATGCTGCTGCTGCTGCTACAGATTCTGCTACTGCTTCGAATGTACCTCAACTTGGAATGCTTCAGTACTCATCGAGTAGTATGCAATGGCAGCCATTGGCATACAATGAGAAGCGCGGCTTGACACGAATCAAACATGCTCTCCCTATCTCAGAGTTGTTCATCTCGAGGTACTATGAAGGATCTATGGCTATGGTGGATGCTAATTCATTAGAAGAATATATTCACATTTGGGTACTGAAAAGTTACCTTAAGAAAGAGTGGGCTTTAGATTACAAAATCAATACCCGAACACTCGTAGGATATCCTGAAGGTGGGTTACGAAAGTATACTTGTTATGAATGGGAGCACGGAATAGCAATCCATAAGGGTGATATGTGCTACTTTTTGGATCTAAGATGTGACTCCATAAAATGTGTCAAAGGAGGATTTGAGAATATCTACAGTTTTACTGGCAGCTTGATTTCCTTGAAAAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

212

Amino Acids

24.26

Weight (kDa)

8.74

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 1 - 37 8.7e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 485
AccII CGCG 1 cut(s) 273
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 346, 555
AcuI CTGAAG 2 cut(s) 203, 486
AfaI GTAC 4 cut(s) 201, 224, 329, 393
AfiI CCNNNNNNNGG 2 cut(s) 209, 470
AflII CTTAAG 2 cut(s) 137, 407
AgsI TTSAA 3 cut(s) 46, 147, 628
AluBI AGCT 1 cut(s) 615
AluI AGCT 1 cut(s) 615
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 3 cut(s) 28, 65, 76
AlwI GGATC 2 cut(s) 346, 555
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 322
ApeKI GCWGC 6 cut(s) 161, 164, 167, 170, 247, 612
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 539
AsuII TTCGAA 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 322
BarI GAAGNNNNNNTAC 2 cut(s) 459, 491
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 6 cut(s) 148, 151, 154, 157, 259, 624
BceAI ACGGC 1 cut(s) 141
BcgI CGANNNNNNTGC 4 cut(s) 140, 174, 220, 254
BcoDI GTCTC 3 cut(s) 28, 65, 76
BfmI CTRYAG 2 cut(s) 174, 598
BfrI CTTAAG 2 cut(s) 137, 407
BisI GCNGC 7 cut(s) 162, 165, 168, 171, 248, 274, 613
BlsI GCNGC 7 cut(s) 163, 166, 169, 172, 249, 275, 614
BmcAI AGTACT 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 322
BmsI GCATC 1 cut(s) 346
Bpu14I TTCGAA 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 470
Bse1I ACTGG 1 cut(s) 613
Bse3DI GCAATG 2 cut(s) 116, 248
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 209, 470
BseMI GCAATG 2 cut(s) 116, 248
BseMII CTCAG 2 cut(s) 76, 321
BseNI ACTGG 1 cut(s) 613
BseXI GCAGC 6 cut(s) 148, 151, 154, 157, 259, 624
Bsh1236I CGCG 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 209, 470
BsmAI GTCTC 3 cut(s) 28, 65, 76
BsmBI CGTCTC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 322
Bsp119I TTCGAA 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 2 cut(s) 338, 547
BspACI CCGC 1 cut(s) 273
BspCNI CTCAG 2 cut(s) 75, 320
BspFNI CGCG 1 cut(s) 273
BspPI GGATC 2 cut(s) 346, 555
BspT104I TTCGAA 1 cut(s) 194
BspTI CTTAAG 2 cut(s) 137, 407
BsrDI GCAATG 2 cut(s) 116, 248
BsrI ACTGG 1 cut(s) 613
BssMI GATC 2 cut(s) 338, 547
BssNAI GTATAC 1 cut(s) 486
Bst1107I GTATAC 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 602
BstAFI CTTAAG 2 cut(s) 137, 407
BstBI TTCGAA 1 cut(s) 194
BstDEI CTNAG 3 cut(s) 62, 307, 551
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 2 cut(s) 341, 550
BstMAI GTCTC 3 cut(s) 28, 65, 76
BstMBI GATC 2 cut(s) 338, 547
BstMWI GCNNNNNNNGC 3 cut(s) 167, 170, 247
BstNSI RCATGY 1 cut(s) 296
BstSFI CTRYAG 2 cut(s) 174, 598
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 6 cut(s) 148, 151, 154, 157, 259, 624
BstX2I RGATCY 2 cut(s) 338, 547
BstYI RGATCY 2 cut(s) 338, 547
BstZ17I GTATAC 1 cut(s) 486
BtsCI GGATG 1 cut(s) 361
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 273
Csp6I GTAC 4 cut(s) 200, 223, 328, 392
CviAII CATG 2 cut(s) 91, 293
CviJI RGCY 5 cut(s) 250, 276, 347, 422, 615
CviKI_1 RGCY 5 cut(s) 250, 276, 347, 422, 615
CviQI GTAC 4 cut(s) 200, 223, 328, 392
DdeI CTNAG 3 cut(s) 62, 307, 551
DpnI GATC 2 cut(s) 340, 549
DpnII GATC 2 cut(s) 338, 547
Eco32I GATATC 3 cut(s) 13, 25, 461
Eco57I CTGAAG 2 cut(s) 203, 486
Eco88I CYCGRG 1 cut(s) 322
EcoRV GATATC 3 cut(s) 13, 25, 461
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 2 cut(s) 94, 296
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 2 cut(s) 90, 292
FblI GTMKAC 1 cut(s) 485
Fnu4HI GCNGC 7 cut(s) 162, 165, 168, 171, 248, 274, 613
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 7 cut(s) 162, 165, 168, 171, 248, 274, 613
GlaI GCGC 1 cut(s) 272
GluI GCNGC 7 cut(s) 162, 165, 168, 171, 248, 274, 613
HhaI GCGC 1 cut(s) 273
Hin1II CATG 2 cut(s) 94, 296
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HinfI GANTC 4 cut(s) 98, 179, 285, 560
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 2 cut(s) 134, 486
Hpy188I TCNGA 3 cut(s) 65, 87, 310
Hpy188III TCNNGA 2 cut(s) 322, 464
Hpy8I GTNNAC 2 cut(s) 134, 486
HpyAV CCTTC 2 cut(s) 329, 461
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 121, 241
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 170, 247
HpyF3I CTNAG 3 cut(s) 62, 307, 551
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 2 cut(s) 94, 296
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 338, 547
LmnI GCTCC 1 cut(s) 502
LpnPI CCDG 3 cut(s) 94, 477, 594
Lsp1109I GCAGC 6 cut(s) 148, 151, 154, 157, 259, 624
LweI GCATC 1 cut(s) 346
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 3 cut(s) 401, 474, 557
MalI GATC 2 cut(s) 340, 549
MboI GATC 2 cut(s) 338, 547
MboII GAAGA 1 cut(s) 383
MflI RGATCY 2 cut(s) 338, 547
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 2 cut(s) 361, 632
MlyI GAGTC 1 cut(s) 554
MnlI CCTC 3 cut(s) 213, 318, 575
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 2 cut(s) 138, 408
MslI CAYNNNNRTG 1 cut(s) 525
MspCI CTTAAG 2 cut(s) 137, 407
Mva1269I GAATGC 1 cut(s) 219
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 167, 170, 247
NdeII GATC 2 cut(s) 338, 547
NlaIII CATG 2 cut(s) 94, 296
NmuCI GTSAC 1 cut(s) 557
NspI RCATGY 1 cut(s) 296
NspV TTCGAA 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 322
PctI GAATGC 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 98, 179, 285
PkrI GCNGC 7 cut(s) 163, 166, 169, 172, 249, 275, 614
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 338, 547
RsaI GTAC 4 cut(s) 201, 224, 329, 393
RsaNI GTAC 4 cut(s) 200, 223, 328, 392
RseI CAYNNNNRTG 1 cut(s) 525
SaqAI TTAA 2 cut(s) 138, 408
SatI GCNGC 7 cut(s) 162, 165, 168, 171, 248, 274, 613
Sau3AI GATC 2 cut(s) 338, 547
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 1 cut(s) 554
SduI GDGCHC 1 cut(s) 507
SetI ASST 7 cut(s) 83, 133, 205, 329, 408, 472, 617
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 2 cut(s) 174, 598
Sfr274I CTCGAG 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 3 cut(s) 137, 322, 407
SmoI CTYRAG 3 cut(s) 137, 322, 407
Sse9I AATT 2 cut(s) 361, 632
SsiI CCGC 1 cut(s) 273
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 133
TaqI TCGA 3 cut(s) 194, 230, 323
TasI AATT 2 cut(s) 361, 632
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 3 cut(s) 98, 179, 285
Tru1I TTAA 2 cut(s) 138, 408
Tru9I TTAA 2 cut(s) 138, 408
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 6 cut(s) 161, 164, 167, 170, 247, 612
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 4 cut(s) 307, 348, 354, 510
TspGWI ACGGA 1 cut(s) 522
Vha464I CTTAAG 2 cut(s) 137, 407
XceI RCATGY 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 378
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.