FvH4_6g09071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000125
Physical Location & Seq
Forward (+)
5375232 .. 5377058
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09071.t1

Sequence Viewer

Length: 573 bp
ATGTCTGATCGCAGCCTTGGAGTTTACTTCTTGTTCAATCATAAGGGAGAAGTTCTAAGGCTCCCTATGAATGAAGTTAACAAAGTTTCTAATGGTAGCGGTACCGAAAGCTGCTTTGGAGCAAAAGTTCTTGTATTAGGCACAAGCTCATGGCGAGAGATACCCTCAGTTCCTCCTGGAAATTTATTCCATGTGAAGAATGAAGCACGGAATCTTGCCTTTCATCACGCTTCGCGCGCTCTTCCGAAGCGGAAGCGCGATGGAAGCGCTAGGAAGTGTGATTCTGGAAAAAGAGTGTTTTGGAAGCGTTATGGAAGTGTGCGCTTCCAAACTAAGGGTGAAAGAAAATACGGGCAAATTGAGGCGAATGTCTGCACCGCCTTTAAAGTGTGGATGCCTCTCCGTTCTCCACCGTCCGACACTGGCGACGCCTCTCCTCTTGCCGAGCGGACACCATACCTCGATAGTGACTTTCCTCTTGCTGTCATCGGGGATGCCTCTGCTGTCATCCGGCAAGAGGAGAGGCGTCGCCGGCGCCGGACGATGGAGAACGAAGAGACGTCCACACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.46

Weight (kDa)

10.01

Isoelectric Point (pI)

68.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 563
Acc65I GGTACC 1 cut(s) 101
AccB1I GGYRCC 2 cut(s) 101, 534
AccBSI CCGCTC 1 cut(s) 448
AccII CGCG 3 cut(s) 235, 237, 258
AciI CCGC 4 cut(s) 99, 250, 378, 448
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 4 cut(s) 429, 526, 535, 560
AfaI GTAC 1 cut(s) 103
AfeI AGCGCT 1 cut(s) 268
AfiI CCNNNNNNNGG 3 cut(s) 334, 517, 544
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 175
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
AluBI AGCT 2 cut(s) 111, 147
AluI AGCT 2 cut(s) 111, 147
Alw26I GTCTC 1 cut(s) 551
Aor51HI AGCGCT 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 12, 111
ApoI RAATTY 1 cut(s) 181
Asp718I GGTACC 1 cut(s) 101
AspLEI GCGC 6 cut(s) 237, 239, 258, 269, 324, 537
AsuHPI GGTGA 1 cut(s) 350
BanI GGYRCC 2 cut(s) 101, 534
BbvI GCAGC 2 cut(s) 24, 98
BccI CCATC 2 cut(s) 254, 538
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 1 cut(s) 270
BfoI RGCGCY 2 cut(s) 270, 538
BisI GCNGC 2 cut(s) 13, 112
BlsI GCNGC 2 cut(s) 14, 113
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 3 cut(s) 62, 103, 536
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 2 cut(s) 384, 484
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BsaHI GRCGYC 4 cut(s) 429, 526, 535, 560
BsaJI CCNNGG 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 517, 544
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 3 cut(s) 399, 499, 507
BseLI CCNNNNNNNGG 3 cut(s) 334, 517, 544
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 427
BsePI GCGCGC 1 cut(s) 235
BseRI GAGGAG 2 cut(s) 426, 533
BseXI GCAGC 2 cut(s) 24, 98
BsgI GTGCAG 1 cut(s) 358
Bsh1236I CGCG 3 cut(s) 235, 237, 258
BshNI GGYRCC 2 cut(s) 101, 534
BsiSI CCGG 3 cut(s) 511, 532, 538
BslI CCNNNNNNNGG 3 cut(s) 334, 517, 544
BsmAI GTCTC 1 cut(s) 551
BsmBI CGTCTC 1 cut(s) 551
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 4 cut(s) 99, 250, 378, 448
BspCNI CTCAG 1 cut(s) 179
BspFNI CGCG 3 cut(s) 235, 237, 258
BspLI GGNNCC 3 cut(s) 62, 103, 536
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 2 cut(s) 101, 534
BsrBI CCGCTC 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 531
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 1 cut(s) 16
BssHII GCGCGC 1 cut(s) 235
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 4 cut(s) 429, 526, 535, 560
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 414
Bst6I CTCTTC 2 cut(s) 246, 549
BstACI GRCGYC 4 cut(s) 429, 526, 535, 560
BstC8I GCNNGC 2 cut(s) 237, 533
BstDEI CTNAG 3 cut(s) 56, 166, 333
BstF5I GGATG 3 cut(s) 399, 499, 507
BstFNI CGCG 3 cut(s) 235, 237, 258
BstH2I RGCGCY 2 cut(s) 270, 538
BstHHI GCGC 6 cut(s) 237, 239, 258, 269, 324, 537
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 3 cut(s) 236, 264, 532
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstUI CGCG 3 cut(s) 235, 237, 258
BstV1I GCAGC 2 cut(s) 24, 98
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 3 cut(s) 399, 499, 507
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 237, 533
CfoI GCGC 6 cut(s) 237, 239, 258, 269, 324, 537
Cfr10I RCCGGY 1 cut(s) 531
CseI GACGC 2 cut(s) 437, 515
Csp6I GTAC 1 cut(s) 102
CviAII CATG 2 cut(s) 150, 191
CviJI RGCY 4 cut(s) 15, 61, 111, 147
CviKI_1 RGCY 4 cut(s) 15, 61, 111, 147
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 3 cut(s) 56, 166, 333
DinI GGCGCC 1 cut(s) 536
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DraI TTTAAA 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 246, 549
EarI CTCTTC 2 cut(s) 246, 549
Eco130I CCWWGG 1 cut(s) 16
Eco47III AGCGCT 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 16
EgeI GGCGCC 1 cut(s) 536
EheI GGCGCC 1 cut(s) 536
ErhI CCWWGG 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 2 cut(s) 153, 194
FaiI YATR 6 cut(s) 42, 68, 151, 192, 312, 457
FatI CATG 2 cut(s) 149, 190
Fnu4HI GCNGC 2 cut(s) 13, 112
FokI GGATG 3 cut(s) 406, 494, 506
Fsp4HI GCNGC 2 cut(s) 13, 112
FspBI CTAG 1 cut(s) 270
GlaI GCGC 6 cut(s) 236, 238, 257, 268, 323, 536
GluI GCNGC 2 cut(s) 13, 112
HaeII RGCGCY 2 cut(s) 270, 538
HapII CCGG 3 cut(s) 511, 532, 538
HgaI GACGC 2 cut(s) 437, 515
HhaI GCGC 6 cut(s) 237, 239, 258, 269, 324, 537
Hin1I GRCGYC 4 cut(s) 429, 526, 535, 560
Hin1II CATG 2 cut(s) 153, 194
Hin6I GCGC 6 cut(s) 235, 237, 256, 267, 322, 535
HinP1I GCGC 6 cut(s) 235, 237, 256, 267, 322, 535
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 2 cut(s) 211, 281
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 3 cut(s) 511, 532, 538
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 25, 79, 564
Hpy188I TCNGA 3 cut(s) 7, 246, 418
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 3 cut(s) 25, 79, 564
Hpy99I CGWCG 2 cut(s) 431, 531
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4IV ACGT 1 cut(s) 560
HpyCH4V TGCA 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 264, 532
HpyF3I CTNAG 3 cut(s) 56, 166, 333
HpySE526I ACGT 1 cut(s) 560
Hsp92I GRCGYC 4 cut(s) 429, 526, 535, 560
Hsp92II CATG 2 cut(s) 153, 194
HspAI GCGC 6 cut(s) 235, 237, 256, 267, 322, 535
KasI GGCGCC 1 cut(s) 534
KpnI GGTACC 1 cut(s) 105
KroI GCCGGC 1 cut(s) 531
KroNI GCCGGC 1 cut(s) 533
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 66, 119
LpnPI CCDG 7 cut(s) 162, 189, 270, 408, 524, 545, 551
Lsp1109I GCAGC 2 cut(s) 24, 98
LweI GCATC 2 cut(s) 384, 484
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 1 cut(s) 467
MalI GATC 1 cut(s) 9
MbiI CCGCTC 1 cut(s) 448
MboI GATC 1 cut(s) 7
MboII GAAGA 3 cut(s) 208, 233, 566
MluCI AATT 2 cut(s) 181, 357
Mly113I GGCGCC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 441
MreI CGCCGGCG 1 cut(s) 531
MroNI GCCGGC 1 cut(s) 531
MseI TTAA 3 cut(s) 78, 384, 571
MspI CCGG 3 cut(s) 511, 532, 538
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MvnI CGCG 3 cut(s) 235, 237, 258
MwoI GCNNNNNNNGC 3 cut(s) 236, 264, 532
NaeI GCCGGC 1 cut(s) 533
NarI GGCGCC 1 cut(s) 535
NdeII GATC 1 cut(s) 7
NgoMIV GCCGGC 1 cut(s) 531
NlaIII CATG 2 cut(s) 153, 194
NlaIV GGNNCC 3 cut(s) 62, 103, 536
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 467
PauI GCGCGC 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 533
PfeI GAWTC 2 cut(s) 211, 281
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 14, 113
PluTI GGCGCC 1 cut(s) 538
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 3 cut(s) 62, 103, 536
PteI GCGCGC 1 cut(s) 235
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 78, 384, 571
SatI GCNGC 2 cut(s) 13, 112
Sau3AI GATC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 177
SetI ASST 4 cut(s) 113, 149, 462, 563
SfaNI GCATC 2 cut(s) 384, 484
SfoI GGCGCC 1 cut(s) 536
SgrAI CRCCGGYG 1 cut(s) 531
Sse9I AATT 2 cut(s) 181, 357
SsiI CCGC 4 cut(s) 99, 250, 378, 448
SspDI GGCGCC 1 cut(s) 534
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 414
TaiI ACGT 1 cut(s) 563
TaqI TCGA 1 cut(s) 462
TasI AATT 2 cut(s) 181, 357
TfiI GAWTC 2 cut(s) 211, 281
Tru1I TTAA 3 cut(s) 78, 384, 571
Tru9I TTAA 3 cut(s) 78, 384, 571
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 2 cut(s) 12, 111
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 4 cut(s) 83, 87, 212, 216
TspGWI ACGGA 2 cut(s) 223, 392
TspRI CASTG 1 cut(s) 427
XapI RAATTY 1 cut(s) 181
XspI CTAG 1 cut(s) 270
ZraI GACGTC 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.