Rh6CG343800

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
53466289 .. 53466771
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG343800.1

Sequence Viewer

Length: 483 bp
ATGCATTGGTTGTTTAATGGTTATACTAGCGAAGGAGTTCAAGGTAGAACCCATATACTTTCCTTTGACTTCAAGAAAGAAGAGTTCTTTTGGATTCCCAATCCCTACACATTACCAGCTATGAGCTGGCAGTTACACATGATTACCTTAATAGGATCTATGGCCATTGTGGATACTTCATCAGGTACGAATATTGAGATATGGGTGATGAAAGATTACAATAAAAAACAGTGGATGCTCGATTATTCCATCAATATCCACATGCTTGAATTAGATCCTCAATTTGAGTTTTTGCGAGCTGTTTGTTGTGAGTGGGAGCATGACATACTTTTCATAGATCAACCAGCCACATTAACATTGTTTTTGGATCTAAGACCACCTGTTGTTAGGAACAATCTTTTCAAATGTCCAATTAAGGGGTGTGATTTGGAGTGTAGGCGAATAATGAGTCTTAACGGGAGCTTGATTTCCCTAAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

18.78

Weight (kDa)

5.68

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 122 7.1e-06 F-box associated beta propeller domain
FBA_3 PF08268 17 - 81 1.9e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 163, 269, 375
AcoI YGGCCR 1 cut(s) 162
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 4 cut(s) 41, 73, 269, 403
AluBI AGCT 4 cut(s) 119, 126, 299, 462
AluI AGCT 4 cut(s) 119, 126, 299, 462
AlwI GGATC 3 cut(s) 163, 269, 375
AoxI GGCC 1 cut(s) 162
ArsI GACNNNNNNTTYG 2 cut(s) 433, 465
Asp700I GAANNNNTTC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 217
BalI TGGCCA 1 cut(s) 164
BccI CCATC 1 cut(s) 257
BciVI GTATCC 1 cut(s) 166
BfaI CTAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 166
BmsI GCATC 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 416
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 416
BshFI GGCC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 416
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 155, 274, 337, 367
BspANI GGCC 1 cut(s) 164
BspPI GGATC 3 cut(s) 163, 269, 375
BssMI GATC 4 cut(s) 155, 274, 337, 367
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 128, 297
BstDEI CTNAG 1 cut(s) 371
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 4 cut(s) 158, 277, 340, 370
BstMBI GATC 4 cut(s) 155, 274, 337, 367
BstNSI RCATGY 1 cut(s) 265
BstX2I RGATCY 3 cut(s) 155, 274, 367
BstYI RGATCY 3 cut(s) 155, 274, 367
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 128, 297
Csp6I GTAC 1 cut(s) 186
CviAII CATG 3 cut(s) 139, 262, 320
CviJI RGCY 6 cut(s) 119, 126, 164, 299, 347, 462
CviKI_1 RGCY 6 cut(s) 119, 126, 164, 299, 347, 462
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 371
DpnI GATC 4 cut(s) 157, 276, 339, 369
DpnII GATC 4 cut(s) 155, 274, 337, 367
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 142, 265, 323
FatI CATG 3 cut(s) 138, 261, 319
FokI GGATG 1 cut(s) 247
FspBI CTAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 3 cut(s) 142, 265, 323
HinfI GANTC 2 cut(s) 94, 448
HphI GGTGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 371
Hsp92II CATG 3 cut(s) 142, 265, 323
Kzo9I GATC 4 cut(s) 155, 274, 337, 367
LmnI GCTCC 2 cut(s) 316, 459
LpnPI CCDG 5 cut(s) 112, 129, 168, 357, 393
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 132
MalI GATC 4 cut(s) 157, 276, 339, 369
MboI GATC 4 cut(s) 155, 274, 337, 367
MboII GAAGA 1 cut(s) 92
MflI RGATCY 3 cut(s) 155, 274, 367
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 3 cut(s) 269, 281, 411
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 1 cut(s) 288
Mox20I TGGCCA 1 cut(s) 164
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 1 cut(s) 164
MseI TTAA 6 cut(s) 15, 149, 353, 414, 453, 481
Msp20I TGGCCA 1 cut(s) 164
NdeII GATC 4 cut(s) 155, 274, 337, 367
NlaIII CATG 3 cut(s) 142, 265, 323
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 94
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
PsuI RGATCY 3 cut(s) 155, 274, 367
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 6 cut(s) 15, 149, 353, 414, 453, 481
Sau3AI GATC 4 cut(s) 155, 274, 337, 367
SchI GAGTC 1 cut(s) 457
SetI ASST 8 cut(s) 46, 121, 128, 149, 187, 301, 382, 464
SfaNI GCATC 1 cut(s) 225
Sse9I AATT 3 cut(s) 269, 281, 411
SspI AATATT 1 cut(s) 193
SspMI CTAG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 240
TasI AATT 3 cut(s) 269, 281, 411
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 6 cut(s) 15, 149, 353, 414, 453, 481
Tru9I TTAA 6 cut(s) 15, 149, 353, 414, 453, 481
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 168, 224, 322
TspRI CASTG 1 cut(s) 236
XceI RCATGY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.