Rh2AG589800

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
82076303 .. 82076933
631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG589800.1

Sequence Viewer

Length: 582 bp
ATGGAGATGTCGACGGCGGCAATCAGTACCTCAAAGTTGATGGAGCTCCCTCATGATATCCTCCTCAACATCTTTTCGAGACTGCCGGTGACATCGTTCCAATGCGTCTCTAAGAGCTCACTTACCCTAGTCAACGATCCAGCTCTTGCTGCCATGCACTTGGCAGCTACCAATGAACACATCGACGTAGAATTTGTTTCTTGCGGTTTGCTTGGCTTTGAATTTTTTGGTCCTTATGGAATATTTGGTTTATACAATCCTTTAAGAGGAGAATATCTACGGCTTCCACAACCTGAAGTTAGATACGATTACGATATCAAGTGTGAGCGGTATGGTATGGGATTCGATAGTGTTACTAGCACCCACAAGATAGTCCATTTTTTCCGCCTGTGCGATGATGGCTCTAAACACTCTATGGTGGCTCGTGTTCATGTTTTGGGCAGAAGCTCGTGGAGAAGAACACCCTCGGTTCCTCCTCGTTGCATTTTCGTAGGTGTGAAAAATGCATATGCATATGGAAACATGCATTGGTTGGTAGAGGGAAACCGGATAATCTCTTTTGCCTTCGAAAAAGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

193

Amino Acids

21.86

Weight (kDa)

6.7

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 49 - 154 2.6e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 11
AciI CCGC 4 cut(s) 17, 204, 328, 385
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 2 cut(s) 191, 221
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 221
AjuI GAANNNNNNNTTGG 2 cut(s) 511, 543
AluBI AGCT 5 cut(s) 46, 117, 143, 167, 447
AluI AGCT 5 cut(s) 46, 117, 143, 167, 447
Alw21I GWGCWC 2 cut(s) 48, 119
Alw26I GTCTC 2 cut(s) 73, 112
AlwI GGATC 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 149, 164
ApoI RAATTY 2 cut(s) 191, 221
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 100
AsuII TTCGAA 1 cut(s) 567
AvaII GGWCC 1 cut(s) 230
BanII GRGCYC 2 cut(s) 48, 119
BauI CACGAG 2 cut(s) 423, 448
Bbv12I GWGCWC 2 cut(s) 48, 119
BbvI GCAGC 2 cut(s) 136, 176
BccI CCATC 2 cut(s) 34, 392
BceAI ACGGC 2 cut(s) 30, 296
BcoDI GTCTC 2 cut(s) 73, 112
BfaI CTAG 2 cut(s) 128, 357
BisI GCNGC 3 cut(s) 18, 150, 165
BlsI GCNGC 3 cut(s) 19, 151, 166
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 546
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 266
BseRI GAGGAG 3 cut(s) 53, 282, 465
BseXI GCAGC 2 cut(s) 136, 176
BsiHKAI GWGCWC 2 cut(s) 48, 119
BsiSI CCGG 2 cut(s) 86, 547
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 2 cut(s) 73, 112
BsmBI CGTCTC 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 48, 119
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 4 cut(s) 17, 204, 328, 385
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 471
BspPI GGATC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 567
BsrBI CCGCTC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 1 cut(s) 136
BssSI CACGAG 2 cut(s) 423, 448
Bst2BI CACGAG 2 cut(s) 423, 448
BstBI TTCGAA 1 cut(s) 567
BstDEI CTNAG 1 cut(s) 111
BstENI CCTNNNNNAGG 1 cut(s) 264
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 2 cut(s) 73, 112
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 149, 399
BstNSI RCATGY 1 cut(s) 526
BstV1I GCAGC 2 cut(s) 136, 176
BstXI CCANNNNNNTGG 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 408
CciI TCATGA 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 27
CviAII CATG 4 cut(s) 53, 154, 431, 523
CviJI RGCY 9 cut(s) 46, 117, 143, 167, 216, 283, 402, 422, 447
CviKI_1 RGCY 9 cut(s) 46, 117, 143, 167, 216, 283, 402, 422, 447
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EciI GGCGGA 1 cut(s) 374
Ecl136II GAGCTC 2 cut(s) 46, 117
Eco24I GRGCYC 2 cut(s) 48, 119
Eco32I GATATC 2 cut(s) 58, 316
Eco47I GGWCC 1 cut(s) 230
Eco53kI GAGCTC 2 cut(s) 46, 117
Eco57I CTGAAG 1 cut(s) 315
EcoICRI GAGCTC 2 cut(s) 46, 117
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRV GATATC 2 cut(s) 58, 316
EcoT22I ATGCAT 3 cut(s) 508, 514, 528
EcoT38I GRGCYC 2 cut(s) 48, 119
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 4 cut(s) 56, 157, 434, 526
FatI CATG 4 cut(s) 52, 153, 430, 522
FauNDI CATATG 2 cut(s) 508, 514
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 3 cut(s) 18, 150, 165
FriOI GRGCYC 2 cut(s) 48, 119
Fsp4HI GCNGC 3 cut(s) 18, 150, 165
FspBI CTAG 2 cut(s) 128, 357
GluI GCNGC 3 cut(s) 18, 150, 165
HapII CCGG 2 cut(s) 86, 547
HgaI GACGC 1 cut(s) 94
Hin1II CATG 4 cut(s) 56, 157, 434, 526
HincII GTYRAC 2 cut(s) 12, 133
HindII GTYRAC 2 cut(s) 12, 133
HinfI GANTC 1 cut(s) 342
HpaII CCGG 2 cut(s) 86, 547
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 12, 133
Hpy188III TCNNGA 2 cut(s) 53, 78
Hpy8I GTNNAC 2 cut(s) 12, 133
Hpy99I CGWCG 2 cut(s) 16, 188
HpyAV CCTTC 1 cut(s) 574
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 5 cut(s) 157, 483, 506, 512, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 399
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 4 cut(s) 56, 157, 434, 526
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 43, 51
LpnPI CCDG 5 cut(s) 99, 153, 306, 401, 560
Lsp1109I GCAGC 2 cut(s) 136, 176
MaeI CTAG 2 cut(s) 128, 357
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 88, 352
MalI GATC 1 cut(s) 138
MbiI CCGCTC 1 cut(s) 328
MboI GATC 1 cut(s) 136
MboII GAAGA 1 cut(s) 468
MhlI GDGCHC 2 cut(s) 48, 119
MluCI AATT 2 cut(s) 191, 221
Mph1103I ATGCAT 3 cut(s) 508, 514, 528
MseI TTAA 1 cut(s) 263
MspI CCGG 2 cut(s) 86, 547
MwoI GCNNNNNNNGC 2 cut(s) 149, 399
NdeI CATATG 2 cut(s) 508, 514
NdeII GATC 1 cut(s) 136
NlaIII CATG 4 cut(s) 56, 157, 434, 526
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 88
NsiI ATGCAT 3 cut(s) 508, 514, 528
NspI RCATGY 1 cut(s) 526
NspV TTCGAA 1 cut(s) 567
PagI TCATGA 1 cut(s) 52
PfeI GAWTC 1 cut(s) 342
PkrI GCNGC 3 cut(s) 19, 151, 166
Psp124BI GAGCTC 2 cut(s) 48, 119
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SacI GAGCTC 2 cut(s) 48, 119
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 3 cut(s) 18, 150, 165
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 230
SduI GDGCHC 2 cut(s) 48, 119
SetI ASST 9 cut(s) 32, 48, 119, 145, 169, 189, 295, 449, 496
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 1 cut(s) 230
Sse9I AATT 2 cut(s) 191, 221
SsiI CCGC 4 cut(s) 17, 204, 328, 385
SspI AATATT 1 cut(s) 243
SspMI CTAG 2 cut(s) 128, 357
SstI GAGCTC 2 cut(s) 48, 119
TaiI ACGT 1 cut(s) 189
TaqI TCGA 5 cut(s) 11, 77, 183, 345, 567
TasI AATT 2 cut(s) 191, 221
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 149, 164
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 189, 419
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 264
XapI RAATTY 2 cut(s) 191, 221
XceI RCATGY 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 2 cut(s) 128, 357
Zsp2I ATGCAT 3 cut(s) 508, 514, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.