Rh2AG009900

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000125
Physical Location & Seq
Forward (+)
831894 .. 832412
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG009900.1

Sequence Viewer

Length: 519 bp
ATGCAATATAAATTTCGAAAAAGGAATATGCATCATAGTTTCTTACTTTCTTTTGACTTCACAAAAGAAGTGTTCACCTTGATTTCCCTTCCCAGATTACAAAGCTCGGGTATGTGCTTGCACTTGATTACTTTGCGGGGATCTATTGCTATTGTTGATACTTCATCAGATACGAAAATTGAGATATGGGTAATGAAAGATTACAACAGAAAGCAGTGGACACTAGATTACACCATTAATACTCTTGAATCAGGTTTTCTGTCTAACGTTCCGTTTGTTGTTTGTGAATGGGAACATGGCATATTTTTCACAGAAGAATTGGGCGACACATCGTTCTTTTTTTATTTAAGACGTGTTACGCGCATTACTGAAACTGAGTTTTGGCAATGTGTGCGAGTCTTTACTATGAAAGGGGGCTTGATTTCCCTAAAAGATTATGGGAATTTGGTTGACGCATTAGTTTTGAGTTCAAGGAATGAAGTTTCCTGTTTGTCTCTGACGTTGTTTTCTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

172

Amino Acids

20.12

Weight (kDa)

6.9

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 6 - 76 7.7e-11 F-box associated beta propeller domain
FBA_1 PF07734 7 - 106 1.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 361
AciI CCGC 1 cut(s) 136
AclI AACGTT 1 cut(s) 267
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 2 cut(s) 11, 442
AflIII ACRYGT 1 cut(s) 352
AgsI TTSAA 2 cut(s) 248, 471
AjiI CACGTC 1 cut(s) 353
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 106
ApoI RAATTY 2 cut(s) 11, 442
AseI ATTAAT 1 cut(s) 237
AspLEI GCGC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 353
BmsI GCATC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 392
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 498
BsoBI CYCGRG 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 140
BspACI CCGC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 1 cut(s) 361
BspPI GGATC 1 cut(s) 148
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 392
BssMI GATC 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 391
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 375
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstUI CGCG 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BtrI CACGTC 1 cut(s) 353
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 363
CseI GACGC 1 cut(s) 461
CviAII CATG 1 cut(s) 296
CviJI RGCY 2 cut(s) 105, 417
CviKI_1 RGCY 2 cut(s) 105, 417
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 33
FaeI CATG 1 cut(s) 299
FaiI YATR 9 cut(s) 9, 29, 36, 113, 187, 297, 302, 407, 438
FatI CATG 1 cut(s) 295
FauI CCCGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 362
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 363
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 2 cut(s) 248, 396
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 75, 219, 451
Hpy188I TCNGA 2 cut(s) 169, 498
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 3 cut(s) 75, 219, 451
HpyAV CCTTC 1 cut(s) 98
HpyCH4IV ACGT 3 cut(s) 267, 352, 500
HpyCH4V TGCA 3 cut(s) 4, 31, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 3 cut(s) 267, 352, 500
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 3 cut(s) 106, 237, 499
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 224
MaeII ACGT 3 cut(s) 267, 352, 500
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 2 cut(s) 326, 501
MflI RGATCY 1 cut(s) 140
MluCI AATT 4 cut(s) 11, 177, 317, 442
MlyI GAGTC 1 cut(s) 405
Mph1103I ATGCAT 1 cut(s) 33
MseI TTAA 3 cut(s) 237, 347, 517
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 391
NdeII GATC 1 cut(s) 140
NlaIII CATG 1 cut(s) 299
NsiI ATGCAT 1 cut(s) 33
NspV TTCGAA 1 cut(s) 16
PfeI GAWTC 1 cut(s) 248
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PshBI ATTAAT 1 cut(s) 237
Psp1406I AACGTT 1 cut(s) 267
PsuI RGATCY 1 cut(s) 140
SaqAI TTAA 3 cut(s) 237, 347, 517
Sau3AI GATC 1 cut(s) 140
SchI GAGTC 1 cut(s) 405
SetI ASST 6 cut(s) 80, 107, 256, 270, 355, 503
SfaNI GCATC 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 16
Sse9I AATT 4 cut(s) 11, 177, 317, 442
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 224
TaiI ACGT 3 cut(s) 270, 355, 503
TaqI TCGA 1 cut(s) 16
TasI AATT 4 cut(s) 11, 177, 317, 442
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 237, 347, 517
Tru9I TTAA 3 cut(s) 237, 347, 517
TscAI CASTG 1 cut(s) 221
TspDTI ATGAA 4 cut(s) 153, 209, 422, 492
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 1 cut(s) 221
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 2 cut(s) 11, 442
XspI CTAG 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.