Rmu_ssc0000432.1_g000018

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0000125
Physical Location & Seq
Reverse (-)
81457 .. 82575
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000432.1_g000018.1.cds

Sequence Viewer

Length: 1119 bp
atggagattgcaaggaccaaggaaatgtccagcggcagccacagctcaaaggacctccctacggtgatcctcctcaacatcctttctcgactgccagcaaaatctctttttcgtttccaatgtgtctctaagattttctataagctagtcaacgacccctctctagctgcaattcatcttcagcacaacaccgatatgattgaggagctacctctagtcatggtccattctaggtctgcatccaaatattccagattaatgctgtttcgaggctggaaatacaatggcgatagttggacagcaacaagctatgatgacagtttctcttcgggtattttgtccattgaaactaaatatgagctagagtttgcttctggtggcttgctttgctttaaggactctagtttatcaagaggtccagccctattatgcaatccacttaggggagaagctctagagctcccaccttctaatgttaattcactatcccgcttgaatgagtggtacggtataggagtggatgccactaccagcacctacaagattgttaatattgttttcgggattgatcctaggcgttccagttcatatttgacccaagttcatgtactggggacaagctcttggcgacgaatatccgcggttcctccttgtggtttaagtaagcagcatgcatttgcatatggaaacacatattggttgattggacaatgtatactatgtttcgacttcaatgaggagatgttcatatggacttctcatcccaacttaccctccaaaagggttcttaacttgcttaatttgagaggatctctggccattgttgatgctacttcagtatcagtttccaaagttgaggtatgggtgttgaaaaatgataagaaagaatgggtgaaggactacaacataaaactcaatgttggtcagtcttattgttatgaatggtggcctctcaattgttttattcttgttgatgactctaggagcagaaaaggcattgtgggtgtgctccattacaatctagggtggggttctaggaaacgcttgcgttgtggaaatggaagagttgaagtgaattccgtccccaagatcttcagttacaccggaagcctgatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

372

Amino Acids

41.96

Weight (kDa)

9.17

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 715
AccII CGCG 1 cut(s) 641
AciI CCGC 4 cut(s) 33, 490, 639, 641
AclWI GGATC 3 cut(s) 61, 563, 817
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 1 cut(s) 1075
AcuI CTGAAG 3 cut(s) 164, 819, 1078
AfaI GTAC 2 cut(s) 506, 609
AfiI CCNNNNNNNGG 4 cut(s) 61, 443, 653, 780
AgsI TTSAA 5 cut(s) 347, 496, 733, 871, 1070
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AluBI AGCT 9 cut(s) 45, 145, 167, 208, 309, 361, 452, 460, 621
AluI AGCT 9 cut(s) 45, 145, 167, 208, 309, 361, 452, 460, 621
Alw21I GWGCWC 2 cut(s) 462, 1011
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 3 cut(s) 61, 563, 817
AoxI GGCC 2 cut(s) 816, 947
ApeKI GCWGC 3 cut(s) 36, 167, 667
ApoI RAATTY 1 cut(s) 1075
AseI ATTAAT 1 cut(s) 257
AspA2I CCTAGG 1 cut(s) 572
AspS9I GGNCC 4 cut(s) 15, 52, 223, 416
AsuHPI GGTGA 2 cut(s) 76, 904
AvaII GGWCC 4 cut(s) 15, 52, 223, 416
AvrII CCTAGG 1 cut(s) 572
BaeI ACNNNNGTAYC 2 cut(s) 822, 855
BalI TGGCCA 1 cut(s) 818
BanII GRGCYC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 462, 1011
BbvI GCAGC 3 cut(s) 48, 154, 679
BcoDI GTCTC 1 cut(s) 130
BglII AGATCT 1 cut(s) 1089
BisI GCNGC 4 cut(s) 34, 37, 168, 668
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 4 cut(s) 35, 38, 169, 669
Bme18I GGWCC 4 cut(s) 15, 52, 223, 416
BmgT120I GGNCC 4 cut(s) 15, 52, 223, 416
BmiI GGNNCC 1 cut(s) 645
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 3 cut(s) 248, 511, 817
BmuI ACTGGG 1 cut(s) 620
BplI GAGNNNNNCTC 2 cut(s) 796, 828
BsaJI CCNNGG 3 cut(s) 18, 572, 639
BsaWI WCCGGW 1 cut(s) 1103
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 443, 653, 780
Bse1I ACTGG 2 cut(s) 582, 615
BseDI CCNNGG 3 cut(s) 18, 572, 639
BseGI GGATG 4 cut(s) 78, 239, 526, 760
BseLI CCNNNNNNNGG 4 cut(s) 61, 443, 653, 780
BseNI ACTGG 2 cut(s) 582, 615
BseRI GAGGAG 3 cut(s) 62, 218, 752
BseXI GCAGC 3 cut(s) 48, 154, 679
Bsh1236I CGCG 1 cut(s) 641
BshFI GGCC 2 cut(s) 818, 949
BsiHKAI GWGCWC 2 cut(s) 462, 1011
BsiSI CCGG 1 cut(s) 1104
BslFI GGGAC 2 cut(s) 628, 1067
BslI CCNNNNNNNGG 4 cut(s) 61, 443, 653, 780
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 2 cut(s) 628, 1067
BsnI GGCC 2 cut(s) 818, 949
Bsp1286I GDGCHC 2 cut(s) 462, 1011
Bsp143I GATC 4 cut(s) 66, 568, 809, 1089
BspACI CCGC 4 cut(s) 33, 490, 639, 641
BspANI GGCC 2 cut(s) 818, 949
BspFNI CGCG 1 cut(s) 641
BspLI GGNNCC 1 cut(s) 645
BspPI GGATC 3 cut(s) 61, 563, 817
BsrI ACTGG 2 cut(s) 582, 615
BssECI CCNNGG 3 cut(s) 18, 572, 639
BssMI GATC 4 cut(s) 66, 568, 809, 1089
BssNAI GTATAC 1 cut(s) 716
BssT1I CCWWGG 2 cut(s) 18, 572
Bst1107I GTATAC 1 cut(s) 716
Bst4CI ACNGT 3 cut(s) 64, 320, 509
Bst6I CTCTTC 2 cut(s) 331, 1057
BstC8I GCNNGC 4 cut(s) 96, 383, 672, 1046
BstDEI CTNAG 2 cut(s) 129, 440
BstDSI CCRYGG 1 cut(s) 639
BstENI CCTNNNNNAGG 1 cut(s) 778
BstF5I GGATG 4 cut(s) 78, 239, 526, 760
BstFNI CGCG 1 cut(s) 641
BstKTI GATC 4 cut(s) 69, 571, 812, 1092
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 4 cut(s) 66, 568, 809, 1089
BstMWI GCNNNNNNNGC 3 cut(s) 42, 387, 993
BstNSI RCATGY 1 cut(s) 674
BstUI CGCG 1 cut(s) 641
BstV1I GCAGC 3 cut(s) 48, 154, 679
BstX2I RGATCY 2 cut(s) 809, 1089
BstYI RGATCY 2 cut(s) 809, 1089
BstZ17I GTATAC 1 cut(s) 716
BsuRI GGCC 2 cut(s) 818, 949
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 4 cut(s) 78, 239, 526, 760
Cac8I GCNNGC 4 cut(s) 96, 383, 672, 1046
Cfr13I GGNCC 4 cut(s) 15, 52, 223, 416
Cfr42I CCGCGG 1 cut(s) 642
Csp6I GTAC 2 cut(s) 505, 608
CviAII CATG 3 cut(s) 220, 605, 671
CviQI GTAC 2 cut(s) 505, 608
DdeI CTNAG 2 cut(s) 129, 440
DpnI GATC 4 cut(s) 68, 570, 811, 1091
DpnII GATC 4 cut(s) 66, 568, 809, 1089
EaeI YGGCCR 1 cut(s) 816
Eam1104I CTCTTC 2 cut(s) 331, 1057
EarI CTCTTC 2 cut(s) 331, 1057
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 2 cut(s) 18, 572
Eco24I GRGCYC 1 cut(s) 462
Eco47I GGWCC 4 cut(s) 15, 52, 223, 416
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 3 cut(s) 164, 819, 1078
EcoICRI GAGCTC 1 cut(s) 460
EcoNI CCTNNNNNAGG 1 cut(s) 778
EcoO109I RGGNCCY 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 1075
EcoT14I CCWWGG 2 cut(s) 18, 572
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 2 cut(s) 18, 572
FaeI CATG 3 cut(s) 223, 608, 674
FaqI GGGAC 2 cut(s) 628, 1067
FatI CATG 3 cut(s) 219, 604, 670
FauI CCCGC 1 cut(s) 497
FauNDI CATATG 2 cut(s) 682, 749
FblI GTMKAC 1 cut(s) 715
Fnu4HI GCNGC 4 cut(s) 34, 37, 168, 668
FokI GGATG 4 cut(s) 65, 226, 533, 747
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 4 cut(s) 34, 37, 168, 668
GluI GCNGC 4 cut(s) 34, 37, 168, 668
HaeIII GGCC 2 cut(s) 818, 949
HapII CCGG 1 cut(s) 1104
Hin1II CATG 3 cut(s) 223, 608, 674
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 2 cut(s) 398, 977
HpaII CCGG 1 cut(s) 1104
HphI GGTGA 2 cut(s) 76, 904
Hpy166II GTNNAC 2 cut(s) 151, 716
Hpy188III TCNNGA 5 cut(s) 87, 252, 411, 455, 562
Hpy8I GTNNAC 2 cut(s) 151, 716
Hpy99I CGWCG 1 cut(s) 633
HpyAV CCTTC 2 cut(s) 477, 889
HpyCH4III ACNGT 3 cut(s) 64, 320, 509
HpyCH4V TGCA 6 cut(s) 11, 170, 239, 432, 674, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 387, 993
HpyF3I CTNAG 2 cut(s) 129, 440
Hsp92II CATG 3 cut(s) 223, 608, 674
KspI CCGCGG 1 cut(s) 642
Kzo9I GATC 4 cut(s) 66, 568, 809, 1089
LmnI GCTCC 4 cut(s) 205, 465, 984, 1014
Lsp1109I GCAGC 3 cut(s) 48, 154, 679
LweI GCATC 3 cut(s) 248, 511, 817
MaeIII GTNAC 1 cut(s) 1097
MalI GATC 4 cut(s) 68, 570, 811, 1091
MboI GATC 4 cut(s) 66, 568, 809, 1089
MboII GAAGA 4 cut(s) 170, 318, 1074, 1084
MfeI CAATTG 1 cut(s) 955
MflI RGATCY 2 cut(s) 809, 1089
MhlI GDGCHC 2 cut(s) 462, 1011
MlsI TGGCCA 1 cut(s) 818
MluCI AATT 5 cut(s) 171, 478, 799, 955, 1075
MluNI TGGCCA 1 cut(s) 818
MlyI GAGTC 2 cut(s) 392, 971
MmeI TCCRAC 1 cut(s) 275
Mox20I TGGCCA 1 cut(s) 818
Mph1103I ATGCAT 1 cut(s) 676
MscI TGGCCA 1 cut(s) 818
MseI TTAA 7 cut(s) 257, 393, 477, 549, 659, 789, 798
MslI CAYNNNNRTG 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 818
MspA1I CMGCKG 2 cut(s) 33, 641
MspI CCGG 1 cut(s) 1104
MunI CAATTG 1 cut(s) 955
MvnI CGCG 1 cut(s) 641
MwoI GCNNNNNNNGC 3 cut(s) 42, 387, 993
NdeI CATATG 2 cut(s) 682, 749
NdeII GATC 4 cut(s) 66, 568, 809, 1089
NlaIII CATG 3 cut(s) 223, 608, 674
NlaIV GGNNCC 1 cut(s) 645
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 674
PaeI GCATGC 1 cut(s) 674
PkrI GCNGC 4 cut(s) 35, 38, 169, 669
PleI GAGTC 2 cut(s) 392, 971
PpsI GAGTC 2 cut(s) 392, 971
PpuMI RGGWCCY 1 cut(s) 52
PshBI ATTAAT 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 645
PspPI GGNCC 4 cut(s) 15, 52, 223, 416
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 2 cut(s) 809, 1089
RsaI GTAC 2 cut(s) 506, 609
RsaNI GTAC 2 cut(s) 505, 608
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 462
SacII CCGCGG 1 cut(s) 642
SaqAI TTAA 7 cut(s) 257, 393, 477, 549, 659, 789, 798
SatI GCNGC 4 cut(s) 34, 37, 168, 668
Sau3AI GATC 4 cut(s) 66, 568, 809, 1089
Sau96I GGNCC 4 cut(s) 15, 52, 223, 416
SchI GAGTC 2 cut(s) 392, 971
SduI GDGCHC 2 cut(s) 462, 1011
SfaNI GCATC 3 cut(s) 248, 511, 817
Sfr303I CCGCGG 1 cut(s) 642
SgrBI CCGCGG 1 cut(s) 642
SinI GGWCC 4 cut(s) 15, 52, 223, 416
SmiMI CAYNNNNRTG 1 cut(s) 194
SphI GCATGC 1 cut(s) 674
Sse9I AATT 5 cut(s) 171, 478, 799, 955, 1075
SsiI CCGC 4 cut(s) 33, 490, 639, 641
SspI AATATT 2 cut(s) 248, 553
SstI GAGCTC 1 cut(s) 462
StyI CCWWGG 2 cut(s) 18, 572
TaaI ACNGT 3 cut(s) 64, 320, 509
TaqI TCGA 3 cut(s) 88, 268, 726
TasI AATT 5 cut(s) 171, 478, 799, 955, 1075
TatI WGTACW 1 cut(s) 607
TauI GCSGC 1 cut(s) 36
Tru1I TTAA 7 cut(s) 257, 393, 477, 549, 659, 789, 798
Tru9I TTAA 7 cut(s) 257, 393, 477, 549, 659, 789, 798
TseI GCWGC 3 cut(s) 36, 167, 667
TspDTI ATGAA 5 cut(s) 164, 576, 593, 736, 954
TspGWI ACGGA 1 cut(s) 1069
VpaK11BI GGWCC 4 cut(s) 15, 52, 223, 416
VspI ATTAAT 1 cut(s) 257
XagI CCTNNNNNAGG 1 cut(s) 778
XapI RAATTY 1 cut(s) 1075
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 1 cut(s) 674
XmaJI CCTAGG 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 715
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.