RLG00000025093

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000125
Physical Location & Seq
Reverse (-)
41911021 .. 41911873
853 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025093

Sequence Viewer

Length: 684 bp
ATGTCTTTTGCTCGGCAGTCTGCTCACGAGATTAGTCCAGTTATAGGGGCCTTGCAACCACTGAAATACGAGGGCAGGGCCTTGACGAAAGGAAAATATGCAATTAATGTCTCCACATCATCAGACTGGCCTGACTACACGGCTTACACCATAGACTTTGTTTTCTGCAACTTGTTTTGCTTTCGAAATATAGATGATCGGGGCCTTTGCTTCTTGTTCAACCCCAAGGGAGAAGTTCTAAGGCTCCCTAGGAATGAATTAAGTTACCAAGGATTTGATAATATGACCAACACCCACAAGATTGTTAGTGTTTCCAGAGTTTCTAATGGTAGCGGTAAAGAGAGCTGCCTTGTAGCCCAAGTTCTTGTATTAGGCACAAGCTCATGGCGAGAGATACCATCAGTTCCTCCTGGTAATTTAGATTATGATTTAAGCTTTGTGAATAATGTATGCGCCCATGGAGACATGCATTGGCTAATTACTGGTAATTTCATAAGAGAAGGAAGTGAAGGAACATGCCATATAATTTCTTTCGACTTCAAGAAAGAAGAGTTCTATTGGACTCCCCATGTTACAAAGCTCGAACAAGCACTTGGACTTCTTCGACTTACACTTGCTTACTCTAAGAGGATCTATGGCCCTGGTGTCTACTTCATCATCAGTAGGTGGGACGACGGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

228

Amino Acids

25.72

Weight (kDa)

6.59

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 55 - 193 9e-10 F-box associated beta propeller domain
FBA_1 PF07734 89 - 186 9.3e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 648
AciI CCGC 1 cut(s) 333
AclWI GGATC 1 cut(s) 638
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 2 cut(s) 220, 541
AjnI CCWGG 2 cut(s) 409, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 576, 608
AluBI AGCT 4 cut(s) 345, 381, 435, 580
AluI AGCT 4 cut(s) 345, 381, 435, 580
Alw26I GTCTC 2 cut(s) 115, 456
AlwI GGATC 1 cut(s) 638
AoxI GGCC 5 cut(s) 48, 78, 128, 202, 637
ApeKI GCWGC 1 cut(s) 345
AseI ATTAAT 1 cut(s) 105
AspA2I CCTAGG 1 cut(s) 248
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 4 cut(s) 48, 78, 202, 638
AsuII TTCGAA 1 cut(s) 184
AvrII CCTAGG 1 cut(s) 248
BauI CACGAG 1 cut(s) 26
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 406
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 411, 642
BcoDI GTCTC 2 cut(s) 115, 456
BfaI CTAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 346
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 1 cut(s) 347
Bme1390I CCNGG 2 cut(s) 411, 642
BmgT120I GGNCC 4 cut(s) 48, 78, 202, 638
BmiI GGNNCC 3 cut(s) 49, 203, 245
BmrFI CCNGG 2 cut(s) 411, 642
Bpu14I TTCGAA 1 cut(s) 184
BsaJI CCNNGG 5 cut(s) 225, 248, 268, 457, 640
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 38, 131, 487
BseBI CCWGG 2 cut(s) 411, 642
BseDI CCNNGG 5 cut(s) 225, 248, 268, 457, 640
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 3 cut(s) 38, 131, 487
BseXI GCAGC 1 cut(s) 332
BshFI GGCC 5 cut(s) 50, 80, 130, 204, 639
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 115, 456
BsnI GGCC 5 cut(s) 50, 80, 130, 204, 639
Bsp119I TTCGAA 1 cut(s) 184
Bsp143I GATC 2 cut(s) 196, 630
Bsp19I CCATGG 1 cut(s) 457
BspACI CCGC 1 cut(s) 333
BspANI GGCC 5 cut(s) 50, 80, 130, 204, 639
BspLI GGNNCC 3 cut(s) 49, 203, 245
BspPI GGATC 1 cut(s) 638
BspT104I TTCGAA 1 cut(s) 184
BsrI ACTGG 3 cut(s) 38, 131, 487
BssECI CCNNGG 5 cut(s) 225, 248, 268, 457, 640
BssMI GATC 2 cut(s) 196, 630
BssSI CACGAG 1 cut(s) 26
BssT1I CCWWGG 4 cut(s) 225, 248, 268, 457
Bst2BI CACGAG 1 cut(s) 26
Bst2UI CCWGG 2 cut(s) 411, 642
Bst6I CTCTTC 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 239, 624
BstDSI CCRYGG 1 cut(s) 457
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 2 cut(s) 199, 633
BstMAI GTCTC 2 cut(s) 115, 456
BstMBI GATC 2 cut(s) 196, 630
BstNI CCWGG 2 cut(s) 411, 642
BstNSI RCATGY 2 cut(s) 469, 519
BstSCI CCNGG 2 cut(s) 409, 640
BstV1I GCAGC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 630
BstYI RGATCY 1 cut(s) 630
BsuRI GGCC 5 cut(s) 50, 80, 130, 204, 639
BtgI CCRYGG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 455
Cfr13I GGNCC 4 cut(s) 48, 78, 202, 638
CviAII CATG 5 cut(s) 384, 458, 466, 516, 569
DdeI CTNAG 2 cut(s) 239, 624
DpnI GATC 2 cut(s) 198, 632
DpnII GATC 2 cut(s) 196, 630
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco130I CCWWGG 4 cut(s) 225, 248, 268, 457
EcoO109I RGGNCCY 3 cut(s) 48, 78, 202
EcoRII CCWGG 2 cut(s) 409, 640
EcoT14I CCWWGG 4 cut(s) 225, 248, 268, 457
EcoT22I ATGCAT 1 cut(s) 471
ErhI CCWWGG 4 cut(s) 225, 248, 268, 457
FaeI CATG 5 cut(s) 387, 461, 469, 519, 572
FatI CATG 5 cut(s) 383, 457, 465, 515, 568
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 1 cut(s) 346
Fsp4HI GCNGC 1 cut(s) 346
FspBI CTAG 1 cut(s) 249
GlaI GCGC 1 cut(s) 454
GluI GCNGC 1 cut(s) 346
HaeIII GGCC 5 cut(s) 50, 80, 130, 204, 639
HhaI GCGC 1 cut(s) 455
Hin1II CATG 5 cut(s) 387, 461, 469, 519, 572
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 1 cut(s) 562
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 26, 315, 541
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 2 cut(s) 494, 503
HpyCH4V TGCA 4 cut(s) 55, 101, 168, 469
HpyF3I CTNAG 2 cut(s) 239, 624
Hsp92II CATG 5 cut(s) 387, 461, 469, 519, 572
HspAI GCGC 1 cut(s) 453
Kzo9I GATC 2 cut(s) 196, 630
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 1 cut(s) 332
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 263, 571
MalI GATC 2 cut(s) 198, 632
MboI GATC 2 cut(s) 196, 630
MboII GAAGA 2 cut(s) 560, 593
MflI RGATCY 1 cut(s) 630
MluCI AATT 6 cut(s) 102, 257, 415, 477, 487, 525
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 3 cut(s) 64, 417, 621
Mph1103I ATGCAT 1 cut(s) 471
MseI TTAA 3 cut(s) 105, 260, 431
MspR9I CCNGG 2 cut(s) 411, 642
MvaI CCWGG 2 cut(s) 411, 642
NcoI CCATGG 1 cut(s) 457
NdeII GATC 2 cut(s) 196, 630
NlaIII CATG 5 cut(s) 387, 461, 469, 519, 572
NlaIV GGNNCC 3 cut(s) 49, 203, 245
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 2 cut(s) 469, 519
NspV TTCGAA 1 cut(s) 184
PkrI GCNGC 1 cut(s) 347
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PshBI ATTAAT 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 409, 640
PspGI CCWGG 2 cut(s) 409, 640
PspN4I GGNNCC 3 cut(s) 49, 203, 245
PspPI GGNCC 4 cut(s) 48, 78, 202, 638
PsrI GAACNNNNNNTAC 2 cut(s) 345, 377
PsuI RGATCY 1 cut(s) 630
SaqAI TTAA 3 cut(s) 105, 260, 431
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 2 cut(s) 196, 630
Sau96I GGNCC 4 cut(s) 48, 78, 202, 638
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 2 cut(s) 411, 642
SetI ASST 5 cut(s) 347, 383, 437, 582, 668
SfuI TTCGAA 1 cut(s) 184
Sse9I AATT 6 cut(s) 102, 257, 415, 477, 487, 525
SsiI CCGC 1 cut(s) 333
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 409, 640
StyI CCWWGG 4 cut(s) 225, 248, 268, 457
TaqI TCGA 4 cut(s) 184, 534, 582, 604
TasI AATT 6 cut(s) 102, 257, 415, 477, 487, 525
Tru1I TTAA 3 cut(s) 105, 260, 431
Tru9I TTAA 3 cut(s) 105, 260, 431
TscAI CASTG 1 cut(s) 66
TseI GCWGC 1 cut(s) 345
TspDTI ATGAA 3 cut(s) 270, 481, 643
TspRI CASTG 1 cut(s) 66
VspI ATTAAT 1 cut(s) 105
XceI RCATGY 2 cut(s) 469, 519
XmaJI CCTAGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 648
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.