Rh3AG233600

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000125
Physical Location & Seq
Reverse (-)
24079799 .. 24089145
9347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG233600.1

Sequence Viewer

Length: 756 bp
ATGGCAATTGTTGATACTTCATCACATACACATATTGACATATGGGTTTTGAAGAGTTATGAGAAGAAAGAGTGGGTGCGAGATTACAGCGTGAATTTCGAACTGCCTGATGTAGAGCGTCCTTGGCATCTTTACCAGTGTGGTACTTGCATTGGTGAGTGGGAGCCTGGAATATTTTTCGTAGAATTTTATGTTGCTACTAACGCATTCTTTGTGGATACAAGATGTGATTCTGTGAAACGTGCATCACTTGGAGGTTCAGAGTATACGAGGATCTTTAGCTATCCTGGGAGTTTGATTTCATTAAAAGATTATGGCAATGCATTAGTAGCAGAACCTGTAATTGAAGATTTGGAGATGCTGAGAACGAAACGAATGAGCCGGTGCAGCAACGATGCAAAGTTGATGGACCTACCCATTGATATCCTCATCAACATCCTTTTGAGACTGCCGGAAAAATCACTTTGCTGCACACAGTGCGTCTGTAAAACCCTTCTTCACATAGTTGAAGCTCGTTCTTTTGCAAAACTAGTGCATCTGCGCTTGCTTACTACCGCTTCCGATGCAGTCACTGAAGTGCCTCAACTTTTGCGTCTTAGTCTTACTGAATTCAATGAGAACGGAAGCTTAATAACAATCTCTCCATCACAGAGATATGATGGCAATGTCTTGACAAGAAGCAGACATCCCATTGTCTCAGAGATTGCATCCTGCCGTTATGATTACAATGTCGTTCTGCAACTTGTTTTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

251

Amino Acids

28.65

Weight (kDa)

5.72

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 135 - 173 1.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 266
AciI CCGC 1 cut(s) 555
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 3 cut(s) 94, 185, 608
AcuI CTGAAG 1 cut(s) 594
AdeI CACNNNGTG 1 cut(s) 477
AfaI GTAC 1 cut(s) 145
AgsI TTSAA 4 cut(s) 52, 347, 509, 613
AhlI ACTAGT 1 cut(s) 529
AjnI CCWGG 2 cut(s) 166, 286
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 3 cut(s) 282, 512, 627
AluI AGCT 3 cut(s) 282, 512, 627
Alw26I GTCTC 2 cut(s) 439, 700
AlwI GGATC 1 cut(s) 281
AlwNI CAGNNNCTG 2 cut(s) 338, 572
ApeKI GCWGC 2 cut(s) 387, 468
ApoI RAATTY 3 cut(s) 94, 185, 608
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 99
AvaII GGWCC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 399, 455
BccI CCATC 3 cut(s) 400, 652, 653
BceAI ACGGC 1 cut(s) 699
BciT130I CCWGG 2 cut(s) 168, 288
BciVI GTATCC 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 439, 700
BcuI ACTAGT 1 cut(s) 529
BfaI CTAG 1 cut(s) 530
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 2 cut(s) 388, 469
BlsI GCNGC 2 cut(s) 389, 470
Bme1390I CCNGG 2 cut(s) 168, 288
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 168, 288
BmsI GCATC 7 cut(s) 136, 254, 348, 385, 544, 553, 716
Bpu14I TTCGAA 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 122, 287
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 2 cut(s) 325, 670
BseBI CCWGG 2 cut(s) 168, 288
BseDI CCNNGG 2 cut(s) 122, 287
BseGI GGATG 3 cut(s) 435, 685, 707
BseMI GCAATG 2 cut(s) 325, 670
BseMII CTCAG 2 cut(s) 353, 711
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 399, 455
BsgI GTGCAG 2 cut(s) 406, 454
BsiSI CCGG 2 cut(s) 382, 452
BsmAI GTCTC 2 cut(s) 439, 700
BsmI GAATGC 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 1 cut(s) 555
BspCNI CTCAG 2 cut(s) 354, 710
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 1 cut(s) 281
BspT104I TTCGAA 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 325, 670
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 122, 287
BssMI GATC 1 cut(s) 273
BssNAI GTATAC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 122
Bst1107I GTATAC 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 168, 288
Bst4CI ACNGT 1 cut(s) 477
Bst6I CTCTTC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 477
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 545
BstDEI CTNAG 3 cut(s) 362, 596, 697
BstF5I GGATG 3 cut(s) 435, 685, 707
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 2 cut(s) 439, 700
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 6 cut(s) 124, 203, 329, 387, 477, 563
BstNI CCWGG 2 cut(s) 168, 288
BstSCI CCNGG 2 cut(s) 166, 286
BstV1I GCAGC 2 cut(s) 399, 455
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BstZ17I GTATAC 1 cut(s) 267
BsuI GTATCC 1 cut(s) 211
BtsCI GGATG 3 cut(s) 435, 685, 707
BtsIMutI CAGTG 3 cut(s) 143, 482, 570
Cac8I GCNNGC 1 cut(s) 545
CaiI CAGNNNCTG 2 cut(s) 338, 572
CfoI GCGC 1 cut(s) 543
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 3 cut(s) 107, 469, 581
Csp6I GTAC 1 cut(s) 144
CviJI RGCY 5 cut(s) 166, 282, 381, 512, 627
CviKI_1 RGCY 5 cut(s) 166, 282, 381, 512, 627
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 3 cut(s) 362, 596, 697
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 122
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 2 cut(s) 166, 286
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 122
FauNDI CATATG 1 cut(s) 41
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 388, 469
FokI GGATG 3 cut(s) 422, 672, 694
Fsp4HI GCNGC 2 cut(s) 388, 469
FspBI CTAG 1 cut(s) 530
GlaI GCGC 1 cut(s) 542
GluI GCNGC 2 cut(s) 388, 469
HapII CCGG 2 cut(s) 382, 452
HgaI GACGC 3 cut(s) 107, 469, 581
HhaI GCGC 1 cut(s) 543
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 1 cut(s) 230
HpaII CCGG 2 cut(s) 382, 452
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 262, 562, 700
Hpy188III TCNNGA 1 cut(s) 670
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 503
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4IV ACGT 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 6 cut(s) 124, 203, 329, 387, 477, 563
HpyF3I CTNAG 3 cut(s) 362, 596, 697
HpySE526I ACGT 1 cut(s) 241
HspAI GCGC 1 cut(s) 541
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 2 cut(s) 399, 455
LweI GCATC 7 cut(s) 136, 254, 348, 385, 544, 553, 716
MaeI CTAG 1 cut(s) 530
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 568
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 4 cut(s) 64, 76, 359, 488
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 273
MluCI AATT 5 cut(s) 6, 94, 185, 342, 608
MnlI CCTC 4 cut(s) 248, 264, 437, 591
Mph1103I ATGCAT 1 cut(s) 325
MseI TTAA 3 cut(s) 305, 629, 754
MslI CAYNNNNRTG 1 cut(s) 575
MspI CCGG 2 cut(s) 382, 452
MspR9I CCNGG 2 cut(s) 168, 288
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 2 cut(s) 168, 288
MwoI GCNNNNNNNGC 6 cut(s) 124, 203, 329, 387, 477, 563
NdeI CATATG 1 cut(s) 41
NdeII GATC 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 568
NsiI ATGCAT 1 cut(s) 325
NspV TTCGAA 1 cut(s) 99
OliI CACNNNNGTG 1 cut(s) 575
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 389, 470
Psp6I CCWGG 2 cut(s) 166, 286
PspGI CCWGG 2 cut(s) 166, 286
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 409
PstNI CAGNNNCTG 2 cut(s) 338, 572
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 3 cut(s) 305, 629, 754
SatI GCNGC 2 cut(s) 388, 469
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 168, 288
SetI ASST 7 cut(s) 244, 259, 284, 340, 414, 514, 629
SfaNI GCATC 7 cut(s) 136, 254, 348, 385, 544, 553, 716
SfuI TTCGAA 1 cut(s) 99
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 575
SpeI ACTAGT 1 cut(s) 529
Sse9I AATT 5 cut(s) 6, 94, 185, 342, 608
SsiI CCGC 1 cut(s) 555
SspI AATATT 1 cut(s) 174
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 2 cut(s) 166, 286
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 477
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 99
TasI AATT 5 cut(s) 6, 94, 185, 342, 608
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 305, 629, 754
Tru9I TTAA 3 cut(s) 305, 629, 754
TscAI CASTG 3 cut(s) 143, 482, 577
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 2 cut(s) 387, 468
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 2 cut(s) 9, 291
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 3 cut(s) 143, 482, 577
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 3 cut(s) 94, 185, 608
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 1 cut(s) 530
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.