Rmu_sc0003901.1_g000002

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003901.1
OG0000125
Physical Location & Seq
Forward (+)
19858 .. 20244
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003901.1_g000002.1.cds

Sequence Viewer

Length: 387 bp
atgtccttgaattgggtacagcctcatggcgtgagatatcctcggttcttcccggtgatcactttagtttctacaagcggggtttctgtgcatgtggccggagatatgcattggttgacacaaattagagggaggagcagtatactctcttttgacttcacggaagaagagttctgttggacccctattcctcccactctggatttgacgaagaaaattcatttgcttactttaagaggcgctttgaccatttcggcgacttcatcactagatatgagtcacattgagctatgggtgttgaaagaatatgagaaaatagtctggatgcgagactatgctgtagatgtcaatgtgttctggattattgtagcgtgctacttgtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

128

Amino Acids

14.87

Weight (kDa)

6.17

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AciI CCGC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 216
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 2 cut(s) 10, 301
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 324
AoxI GGCC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 216
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 180
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 315
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 148
BshFI GGCC 1 cut(s) 98
BsiSI CCGG 2 cut(s) 53, 99
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 324
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 1 cut(s) 57
BssNAI GTATAC 1 cut(s) 143
Bst1107I GTATAC 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 373
BstF5I GGATG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 339
BstZ17I GTATAC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 17
CviAII CATG 2 cut(s) 26, 92
CviJI RGCY 3 cut(s) 22, 98, 289
CviKI_1 RGCY 3 cut(s) 22, 98, 289
CviQI GTAC 1 cut(s) 17
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 180
EcoRV GATATC 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 111
FaeI CATG 2 cut(s) 29, 95
FaiI YATR 8 cut(s) 27, 93, 107, 143, 275, 292, 309, 336
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FatI CATG 2 cut(s) 25, 91
FauI CCCGC 1 cut(s) 71
FbaI TGATCA 1 cut(s) 57
FblI GTMKAC 1 cut(s) 142
FokI GGATG 1 cut(s) 337
FspBI CTAG 1 cut(s) 269
GlaI GCGC 1 cut(s) 241
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 53, 99
HhaI GCGC 1 cut(s) 242
Hin1II CATG 2 cut(s) 29, 95
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 1 cut(s) 277
HpaII CCGG 2 cut(s) 53, 99
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 117, 143
Hpy188III TCNNGA 3 cut(s) 200, 322, 358
Hpy8I GTNNAC 2 cut(s) 117, 143
HpyCH4V TGCA 2 cut(s) 91, 109
Hsp92II CATG 2 cut(s) 29, 95
HspAI GCGC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 5 cut(s) 66, 112, 185, 307, 343
LweI GCATC 1 cut(s) 315
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 4 cut(s) 40, 176, 179, 223
MluCI AATT 3 cut(s) 10, 123, 216
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 6 cut(s) 33, 51, 122, 126, 201, 230
Mph1103I ATGCAT 1 cut(s) 111
MseI TTAA 1 cut(s) 233
MspI CCGG 2 cut(s) 53, 99
MspR9I CCNGG 1 cut(s) 53
NciI CCSGG 1 cut(s) 53
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 29, 95
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 1 cut(s) 95
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 180
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 233
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 53
SetI ASST 1 cut(s) 291
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 180
Sse9I AATT 3 cut(s) 10, 123, 216
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 51
TasI AATT 3 cut(s) 10, 123, 216
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 209, 252
TspGWI ACGGA 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 180
XapI RAATTY 1 cut(s) 216
XceI RCATGY 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 142
XspI CTAG 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.