Rw5G003140

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000125
Physical Location & Seq
Forward (+)
2909779 .. 2910636
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G003140.1

Sequence Viewer

Length: 858 bp
ATGTCTAAGGCCTTGTTAAATATGGTTGATGACCTCTTTTTTGTTGCACTGCACACCCGTTTTCTTATCACCACCAACGCTGTTGCTCAAGTACCTCAACTTATATCTTTTGCTGCATTGTTTCCATGTGAGCGTGGTGGAGTGACAGCAGACTTGCAACCCCTCAAATTTGTCAACAGTGCCTTGACAACAAGAGGAACATATTCAATGTATGTCTCCACATTACGCCGGTCCGATTGCCCAACTTACATGGTAGATTTTGTCTTTTGCAACTTGATTTGCTTCAAAAATATAAATAATCGTGGACAAGGAGTTTGCTTCTTAATCGATCTTTGTAGGAGACAAGTTCTAAGGCTCCCTAAGAACGATATTACCAAGAATGCAAAGTCTCCAATATTCTGTAACTGGTATGGTATGGGGTTTGATAGTATTACCAATACCCTCAAGATTCTTCGTGTTACAAAATTTGATGCAGCAGACTGCATGGTAGCTCAAGTTCTTGTACTAGGCAAAAGCTCATGGCGACAGATATCCTCCGCTCCTCTTTGTTATATGTTCGCTATTTGTAATTTATTTACGCCGAAGAATGCATGTGCATATGGAGACATGCATTGGTTGCGTGGTGATGCCATGGTAAAAGAAAGTGAAGCTATAATTTCTTTTGACTTCAAAAAAGAAGAGTTTTGTTGGACGCCTCATCCCAAGCTACGAAGCTCGAAGGAGTACACTCGCTTGTACATGCACTTGCACTTGCTTACTCTTAAAGGATTTCTGGCCCTAGTGGATACTTCATCATCAGTAATTTTTGAGCATATGCTAGTAATTTTTTATACTATTTTTATTTATTTATTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

285

Amino Acids

32.54

Weight (kDa)

8.97

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 88 - 264 5.4e-13 F-box associated beta propeller domain
FBA_1 PF07734 133 - 238 9.9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 539
AciI CCGC 1 cut(s) 537
AcsI RAATTY 2 cut(s) 167, 464
AcyI GRCGYC 1 cut(s) 692
AfaI GTAC 4 cut(s) 93, 504, 725, 737
AgsI TTSAA 3 cut(s) 207, 286, 670
AluBI AGCT 5 cut(s) 491, 516, 650, 706, 714
AluI AGCT 5 cut(s) 491, 516, 650, 706, 714
Alw26I GTCTC 4 cut(s) 220, 334, 393, 597
AoxI GGCC 2 cut(s) 9, 774
ApeKI GCWGC 2 cut(s) 113, 473
ApoI RAATTY 2 cut(s) 167, 464
ArsI GACNNNNNNTTYG 4 cut(s) 23, 55, 297, 329
Asp700I GAANNNNTTC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 231, 775
AsuHPI GGTGA 2 cut(s) 61, 635
AvaII GGWCC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 100, 485
BciVI GTATCC 1 cut(s) 778
BcoDI GTCTC 4 cut(s) 220, 334, 393, 597
BfaI CTAG 3 cut(s) 506, 779, 818
BfuI GTATCC 1 cut(s) 778
BisI GCNGC 2 cut(s) 114, 474
BlsI GCNGC 2 cut(s) 115, 475
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 2 cut(s) 231, 775
BmiI GGNNCC 1 cut(s) 356
BmsI GCATC 2 cut(s) 460, 616
BpuEI CTTGAG 3 cut(s) 72, 428, 477
Bsa29I ATCGAT 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 692
BsaJI CCNNGG 1 cut(s) 630
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 410
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 630
BseGI GGATG 1 cut(s) 697
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 1 cut(s) 531
BseXI GCAGC 2 cut(s) 100, 485
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 2 cut(s) 11, 776
BshVI ATCGAT 1 cut(s) 327
BsiSI CCGG 1 cut(s) 229
BsmAI GTCTC 4 cut(s) 220, 334, 393, 597
BsmI GAATGC 2 cut(s) 385, 592
BsnI GGCC 2 cut(s) 11, 776
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 1 cut(s) 328
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 1 cut(s) 537
BspANI GGCC 2 cut(s) 11, 776
BspDI ATCGAT 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 1 cut(s) 410
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 630
BssMI GATC 1 cut(s) 328
BssNI GRCGYC 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 630
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 672
BstACI GRCGYC 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 616
BstAUI TGTACA 1 cut(s) 735
BstDEI CTNAG 3 cut(s) 6, 350, 360
BstDSI CCRYGG 1 cut(s) 630
BstF5I GGATG 1 cut(s) 697
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 4 cut(s) 220, 334, 393, 597
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 1 cut(s) 616
BstNSI RCATGY 3 cut(s) 594, 610, 742
BstV1I GCAGC 2 cut(s) 100, 485
Bsu15I ATCGAT 1 cut(s) 327
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 2 cut(s) 11, 776
BsuTUI ATCGAT 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 1 cut(s) 697
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 47, 184
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 231, 775
ClaI ATCGAT 1 cut(s) 327
CpoI CGGWCCG 1 cut(s) 231
CseI GACGC 1 cut(s) 700
Csp6I GTAC 4 cut(s) 92, 503, 724, 736
CspI CGGWCCG 1 cut(s) 231
CviAII CATG 8 cut(s) 126, 250, 484, 519, 591, 607, 631, 739
CviJI RGCY 8 cut(s) 11, 355, 491, 516, 650, 706, 714, 776
CviKI_1 RGCY 8 cut(s) 11, 355, 491, 516, 650, 706, 714, 776
CviQI GTAC 4 cut(s) 92, 503, 724, 736
DdeI CTNAG 3 cut(s) 6, 350, 360
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 630
Eco147I AGGCCT 1 cut(s) 11
Eco32I GATATC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 231
EcoRV GATATC 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 630
EcoT22I ATGCAT 2 cut(s) 592, 612
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 8 cut(s) 129, 253, 487, 522, 594, 610, 634, 742
FatI CATG 8 cut(s) 125, 249, 483, 518, 590, 606, 630, 738
FauNDI CATATG 2 cut(s) 598, 813
Fnu4HI GCNGC 2 cut(s) 114, 474
FokI GGATG 1 cut(s) 684
Fsp4HI GCNGC 2 cut(s) 114, 474
FspBI CTAG 3 cut(s) 506, 779, 818
GluI GCNGC 2 cut(s) 114, 474
HaeIII GGCC 2 cut(s) 11, 776
HapII CCGG 1 cut(s) 229
HgaI GACGC 1 cut(s) 700
Hin1I GRCGYC 1 cut(s) 692
Hin1II CATG 8 cut(s) 129, 253, 487, 522, 594, 610, 634, 742
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 448
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 61, 635
Hpy166II GTNNAC 3 cut(s) 175, 305, 726
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 445
Hpy8I GTNNAC 3 cut(s) 175, 305, 726
HpyAV CCTTC 1 cut(s) 712
HpyCH4III ACNGT 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 616
HpyF3I CTNAG 3 cut(s) 6, 350, 360
Hsp92I GRCGYC 1 cut(s) 692
Hsp92II CATG 8 cut(s) 129, 253, 487, 522, 594, 610, 634, 742
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 360, 544
LpnPI CCDG 3 cut(s) 242, 391, 758
Lsp1109I GCAGC 2 cut(s) 100, 485
LweI GCATC 2 cut(s) 460, 616
MaeI CTAG 3 cut(s) 506, 779, 818
MaeIII GTNAC 3 cut(s) 142, 401, 457
MalI GATC 1 cut(s) 330
MbiI CCGCTC 1 cut(s) 539
MboI GATC 1 cut(s) 328
MboII GAAGA 3 cut(s) 443, 595, 689
MluCI AATT 6 cut(s) 167, 464, 568, 654, 801, 822
MmeI TCCRAC 1 cut(s) 668
MnlI CCTC 8 cut(s) 44, 105, 173, 188, 452, 544, 552, 705
Mph1103I ATGCAT 2 cut(s) 592, 612
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 3 cut(s) 17, 323, 762
MspI CCGG 1 cut(s) 229
Mva1269I GAATGC 2 cut(s) 385, 592
MwoI GCNNNNNNNGC 1 cut(s) 616
NcoI CCATGG 1 cut(s) 630
NdeI CATATG 2 cut(s) 598, 813
NdeII GATC 1 cut(s) 328
NlaIII CATG 8 cut(s) 129, 253, 487, 522, 594, 610, 634, 742
NlaIV GGNNCC 1 cut(s) 356
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 2 cut(s) 592, 612
NspI RCATGY 3 cut(s) 594, 610, 742
PceI AGGCCT 1 cut(s) 11
PctI GAATGC 2 cut(s) 385, 592
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 2 cut(s) 115, 475
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 2 cut(s) 231, 775
PsrI GAACNNNNNNTAC 2 cut(s) 480, 512
RsaI GTAC 4 cut(s) 93, 504, 725, 737
RsaNI GTAC 4 cut(s) 92, 503, 724, 736
Rsr2I CGGWCCG 1 cut(s) 231
RsrII CGGWCCG 1 cut(s) 231
SaqAI TTAA 3 cut(s) 17, 323, 762
SatI GCNGC 2 cut(s) 114, 474
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 2 cut(s) 231, 775
SetI ASST 7 cut(s) 36, 97, 493, 518, 652, 708, 716
SfaNI GCATC 2 cut(s) 460, 616
SinI GGWCC 1 cut(s) 231
SmlI CTYRAG 3 cut(s) 87, 443, 492
SmoI CTYRAG 3 cut(s) 87, 443, 492
Sse9I AATT 6 cut(s) 167, 464, 568, 654, 801, 822
SseBI AGGCCT 1 cut(s) 11
SsiI CCGC 1 cut(s) 537
SspI AATATT 1 cut(s) 396
SspMI CTAG 3 cut(s) 506, 779, 818
StuI AGGCCT 1 cut(s) 11
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 327, 716
TasI AATT 6 cut(s) 167, 464, 568, 654, 801, 822
TatI WGTACW 3 cut(s) 502, 723, 735
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 3 cut(s) 17, 323, 762
Tru9I TTAA 3 cut(s) 17, 323, 762
TscAI CASTG 2 cut(s) 54, 184
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 113, 473
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 780
TspRI CASTG 2 cut(s) 54, 184
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 2 cut(s) 167, 464
XceI RCATGY 3 cut(s) 594, 610, 742
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 3 cut(s) 506, 779, 818
Zsp2I ATGCAT 2 cut(s) 592, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.