Rmu_sc0024877.1_g000001

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024877.1
OG0000125
Physical Location & Seq
Forward (+)
1 .. 1001
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024877.1_g000001.1.cds

Sequence Viewer

Length: 1001 bp
gtacactcggcgtctacacaatactcttcctactggtgaagtacctcaacttatgcttcttgctagatcacacgagggaatgaaaacagtaacgaagaccttccacccacttcaataccacggtggcaacgccttgaatatgaaagcacatggaaatggctcagagatcatagtaagccagaaatgtacctacgaggtaggttgtgttttcggcaacttgatttgctttaaagatatcagttatggaggtccgagcttcttgttgaatcctctaatgggagaagttctacggcttccggctagtaaggtgccaatcccagcctctattagatgtcgccgtgagctttttgactggcttgctatgggatttgatgacacaaccggcacgcacaagattcttcgtgtttgcggtaattcacagtacaagaattacctggtggcccaagtacttgaattgggtactgattcatggcgagagatacgtgcagttcctccttgtaatttgagccacaaaaatgcgtctgcatgtggagacatgcattgggtgattgacagacaatcgagaactagaggaaggggagaaagtaatatagtttccttcgacttcaagaaagaggtgttttattggacttctcatcccaaattaagaagtcagttttccgacttgaatttggttaatctgaaaggatgcttagcgattgtggatgcttggttacatacccatggcttgtccatcgagatatgggtgttgaaaaattatgaagtgaaagagtgggtgcgagagtaccgcacagaaatcaaatttttgtttccttgtttgacgggtagttttggtgaatgggaacatggtatatttttcaaagatgcaattagctgggggtttcagaacagagctagtgcaatgtttttggatctaagaagtagtagtgttcaagtggaactggtgaagtgtcctataacattaatgcagaactggactatcatcagttatactgggagcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

333

Amino Acids

37.95

Weight (kDa)

8.86

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 14
AciI CCGC 2 cut(s) 409, 788
AclWI GGATC 1 cut(s) 919
AcsI RAATTY 2 cut(s) 668, 801
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 7 cut(s) 3, 43, 188, 423, 448, 461, 786
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 9 cut(s) 114, 137, 266, 453, 608, 668, 752, 860, 933
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 4 cut(s) 256, 344, 874, 894
AluI AGCT 4 cut(s) 256, 344, 874, 894
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 919
AoxI GGCC 1 cut(s) 439
ApoI RAATTY 2 cut(s) 668, 801
AseI ATTAAT 1 cut(s) 963
Asp700I GAANNNNTTC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 249, 440
AsuHPI GGTGA 4 cut(s) 48, 557, 846, 956
AvaII GGWCC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 308
BauI CACGAG 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 1 cut(s) 741
BceAI ACGGC 2 cut(s) 306, 322
BciT130I CCWGG 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 4 cut(s) 64, 301, 568, 895
BlpI GCTNAGC 1 cut(s) 692
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 249, 440
BmiI GGNNCC 2 cut(s) 310, 999
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 3 cut(s) 678, 695, 854
BpiI GAAGAC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 692
BsaAI YACGTR 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 119, 722
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 5 cut(s) 38, 357, 946, 978, 998
Bse3DI GCAATG 1 cut(s) 907
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 119, 722
BseGI GGATG 3 cut(s) 635, 693, 710
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 907
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 5 cut(s) 38, 357, 946, 978, 998
BseYI CCCAGC 2 cut(s) 317, 874
BsgI GTGCAG 1 cut(s) 505
BshFI GGCC 1 cut(s) 441
BshNI GGYRCC 1 cut(s) 308
BsiSI CCGG 2 cut(s) 297, 382
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 526
BsnI GGCC 1 cut(s) 441
Bsp143I GATC 3 cut(s) 66, 166, 911
Bsp1720I GCTNAGC 1 cut(s) 692
Bsp19I CCATGG 1 cut(s) 722
BspACI CCGC 2 cut(s) 409, 788
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 310, 999
BspPI GGATC 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 907
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 5 cut(s) 38, 357, 946, 978, 998
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 119, 722
BssMI GATC 3 cut(s) 66, 166, 911
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 722
Bst2BI CACGAG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 3 cut(s) 89, 123, 421
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 358, 387
BstDEI CTNAG 3 cut(s) 161, 692, 915
BstDSI CCRYGG 2 cut(s) 119, 722
BstF5I GGATG 3 cut(s) 635, 693, 710
BstKTI GATC 3 cut(s) 69, 169, 914
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 3 cut(s) 66, 166, 911
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 2 cut(s) 529, 539
BstSCI CCNGG 1 cut(s) 433
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 911
BstYI RGATCY 1 cut(s) 911
BsuRI GGCC 1 cut(s) 441
BtgI CCRYGG 2 cut(s) 119, 722
BtsCI GGATG 3 cut(s) 635, 693, 710
Cac8I GCNNGC 2 cut(s) 358, 387
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 2 cut(s) 249, 440
CseI GACGC 1 cut(s) 508
CsiI ACCWGGT 1 cut(s) 433
Csp6I GTAC 7 cut(s) 2, 42, 187, 422, 447, 460, 785
CviAII CATG 6 cut(s) 150, 469, 526, 536, 723, 846
CviQI GTAC 7 cut(s) 2, 42, 187, 422, 447, 460, 785
DdeI CTNAG 3 cut(s) 161, 692, 915
DpnI GATC 3 cut(s) 68, 168, 913
DpnII GATC 3 cut(s) 66, 166, 911
DraI TTTAAA 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 722
Eco32I GATATC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 433
EcoRV GATATC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 722
EcoT22I ATGCAT 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 722
FaeI CATG 6 cut(s) 153, 472, 529, 539, 726, 849
FatI CATG 6 cut(s) 149, 468, 525, 535, 722, 845
FblI GTMKAC 1 cut(s) 14
FokI GGATG 3 cut(s) 622, 700, 717
FspBI CTAG 4 cut(s) 64, 301, 568, 895
GsaI CCCAGC 2 cut(s) 321, 878
HaeIII GGCC 1 cut(s) 441
HapII CCGG 2 cut(s) 297, 382
HgaI GACGC 1 cut(s) 508
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 6 cut(s) 153, 472, 529, 539, 726, 849
HinfI GANTC 3 cut(s) 266, 395, 465
HpaII CCGG 2 cut(s) 297, 382
HphI GGTGA 4 cut(s) 48, 557, 846, 956
Hpy166II GTNNAC 2 cut(s) 4, 15
Hpy188I TCNGA 5 cut(s) 164, 253, 662, 682, 886
Hpy188III TCNNGA 3 cut(s) 562, 608, 737
Hpy8I GTNNAC 2 cut(s) 4, 15
HpyAV CCTTC 3 cut(s) 110, 568, 608
HpyCH4III ACNGT 3 cut(s) 89, 123, 421
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 6 cut(s) 486, 525, 539, 867, 900, 968
HpyF3I CTNAG 3 cut(s) 161, 692, 915
HpySE526I ACGT 1 cut(s) 482
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 6 cut(s) 153, 472, 529, 539, 726, 849
Kzo9I GATC 3 cut(s) 66, 166, 911
LmnI GCTCC 1 cut(s) 997
LweI GCATC 3 cut(s) 678, 695, 854
MabI ACCWGGT 1 cut(s) 433
MaeI CTAG 4 cut(s) 64, 301, 568, 895
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 89, 712
MalI GATC 3 cut(s) 68, 168, 913
MboI GATC 3 cut(s) 66, 166, 911
MboII GAAGA 3 cut(s) 18, 107, 390
MflI RGATCY 1 cut(s) 911
MluCI AATT 9 cut(s) 413, 428, 453, 500, 642, 668, 755, 801, 868
MmeI TCCRAC 1 cut(s) 685
MnlI CCTC 9 cut(s) 55, 68, 188, 240, 280, 332, 502, 564, 608
Mph1103I ATGCAT 1 cut(s) 541
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 4 cut(s) 229, 645, 676, 963
MslI CAYNNNNRTG 3 cut(s) 154, 514, 721
MspI CCGG 2 cut(s) 297, 382
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
NcoI CCATGG 1 cut(s) 722
NdeII GATC 3 cut(s) 66, 166, 911
NlaIII CATG 6 cut(s) 153, 472, 529, 539, 726, 849
NlaIV GGNNCC 2 cut(s) 310, 999
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 2 cut(s) 529, 539
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 3 cut(s) 266, 395, 465
Ppu21I YACGTR 1 cut(s) 483
PshBI ATTAAT 1 cut(s) 963
Psp6I CCWGG 1 cut(s) 433
PspFI CCCAGC 2 cut(s) 317, 874
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 310, 999
PspPI GGNCC 2 cut(s) 249, 440
PsuI RGATCY 1 cut(s) 911
RsaI GTAC 7 cut(s) 3, 43, 188, 423, 448, 461, 786
RsaNI GTAC 7 cut(s) 2, 42, 187, 422, 447, 460, 785
RseI CAYNNNNRTG 3 cut(s) 154, 514, 721
SaqAI TTAA 4 cut(s) 229, 645, 676, 963
Sau3AI GATC 3 cut(s) 66, 166, 911
Sau96I GGNCC 2 cut(s) 249, 440
ScaI AGTACT 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 435
SexAI ACCWGGT 1 cut(s) 433
SfaNI GCATC 3 cut(s) 678, 695, 854
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 3 cut(s) 154, 514, 721
Sse9I AATT 9 cut(s) 413, 428, 453, 500, 642, 668, 755, 801, 868
SsiI CCGC 2 cut(s) 409, 788
SspMI CTAG 4 cut(s) 64, 301, 568, 895
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 722
TaaI ACNGT 3 cut(s) 89, 123, 421
TaiI ACGT 1 cut(s) 485
TaqI TCGA 3 cut(s) 561, 601, 736
TasI AATT 9 cut(s) 413, 428, 453, 500, 642, 668, 755, 801, 868
TatI WGTACW 2 cut(s) 421, 446
TfiI GAWTC 3 cut(s) 266, 395, 465
Tru1I TTAA 4 cut(s) 229, 645, 676, 963
Tru9I TTAA 4 cut(s) 229, 645, 676, 963
TspDTI ATGAA 4 cut(s) 96, 156, 457, 775
VpaK11BI GGWCC 1 cut(s) 249
VspI ATTAAT 1 cut(s) 963
XapI RAATTY 2 cut(s) 668, 801
XceI RCATGY 2 cut(s) 529, 539
XmiI GTMKAC 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 4 cut(s) 64, 301, 568, 895
ZrmI AGTACT 1 cut(s) 448
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.