Rroxscaffold_6G00419520

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000125
Physical Location & Seq
Forward (+)
40971183 .. 40973549
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419520.1

Sequence Viewer

Length: 897 bp
ATGGGATTCGATAAGTTAACCAACAGCCACAAGGTTGTTTGTGTCTCCTCAACTATTGAAGGCTGCTTAGAGACTCACGTTCTTGTATTAGGGACAAACTCATGGAAAAAGATACCCTCTCATCCTCCTTGTGATTTAAGTGAAAAGAAGATATGTGCATATGGAGATATGCATTGGTTGATTGATCTCTCATTACAAGGAAGAGATGATACCAAAGGACTGCGGATAATTTCTTTCGACTTCAAGAAAGATGAATTTTATTGGACTCCCCATCCTACCTCAGTATCTTTGGTTGACGTGCCTTTTATGCACTTGCTTACTTTCGGAGGATCTATCGCCATTGCATATGTTTCATCGGATTTGTATATTAACATATGGGTGTTGAACGATTATGATAGTAAAGATTGGGCACTAGATTACTCCATAGATATCCGTATGTTTTTAGAATATGGGCAGTTGTCTAGACTATTATATAGTCATAGCTGTGGCGAATGGGAGCACGGTATAATCTTTATGGATAAACTAGGCCGAGAGTCATCTTTTTTGGATCTAGGACGTACTTCCACGGAACACATAACACTGAATACAATATTCACATGTGGAAGTTCTTTGAGCCCTATGAAGATCGTCGGCTATACTGGGAGCTTCATTTCTTTAAAAGATTATGGCCAATTGGTTAGACTAGAACCAGGAGTAGAAACGTACAGAATGGAATCTAGCTTCTTACAAAAATTAGGGCTGTGTTTTGTTGGTGCTAAGAAGATCGAAAGGAAAACAACAATTATGGAGGCTTGGACAAGAAATTCCAGTTTGATGTTGGTAAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCCCAGCAGCCACACAAAAGATGCAAGCGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

298

Amino Acids

33.64

Weight (kDa)

6.5

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 1 - 137 3.2e-18 F-box associated beta propeller domain
FBA_1 PF07734 2 - 136 3.2e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 836
AciI CCGC 1 cut(s) 223
AclWI GGATC 2 cut(s) 337, 555
AcoI YGGCCR 2 cut(s) 667, 838
AcsI RAATTY 3 cut(s) 254, 802, 825
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 2 cut(s) 559, 704
AfiI CCNNNNNNNGG 1 cut(s) 836
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 3 cut(s) 59, 244, 385
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 2 cut(s) 688, 849
AluBI AGCT 3 cut(s) 483, 645, 720
AluI AGCT 3 cut(s) 483, 645, 720
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 3 cut(s) 49, 65, 840
AlwI GGATC 2 cut(s) 337, 555
AoxI GGCC 3 cut(s) 526, 667, 838
ApeKI GCWGC 2 cut(s) 63, 869
ApoI RAATTY 3 cut(s) 254, 802, 825
BaeGI GKGCMC 1 cut(s) 412
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
BalI TGGCCA 1 cut(s) 669
BanII GRGCYC 2 cut(s) 617, 857
BarI GAAGNNNNNNTAC 2 cut(s) 193, 225
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 2 cut(s) 50, 881
BccI CCATC 1 cut(s) 279
BceAI ACGGC 1 cut(s) 825
BciT130I CCWGG 2 cut(s) 690, 851
BcoDI GTCTC 3 cut(s) 49, 65, 840
BfaI CTAG 7 cut(s) 413, 462, 524, 551, 683, 717, 895
BisI GCNGC 2 cut(s) 64, 870
BlsI GCNGC 2 cut(s) 65, 871
Bme1390I CCNGG 2 cut(s) 690, 851
BmgBI CACGTC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 690, 851
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 1 cut(s) 873
BmuI ACTGGG 1 cut(s) 648
BsaI GGTCTC 1 cut(s) 840
BsaJI CCNNGG 3 cut(s) 564, 841, 850
Bsc4I CCNNNNNNNGG 1 cut(s) 836
Bse1I ACTGG 2 cut(s) 643, 807
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 2 cut(s) 690, 851
BseDI CCNNGG 3 cut(s) 564, 841, 850
BseGI GGATG 2 cut(s) 121, 271
BseLI CCNNNNNNNGG 1 cut(s) 836
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 643, 807
BseRI GAGGAG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 2 cut(s) 50, 881
BseYI CCCAGC 1 cut(s) 865
BshFI GGCC 3 cut(s) 528, 669, 840
BsiHKAI GWGCWC 1 cut(s) 501
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 836
BsmAI GTCTC 3 cut(s) 49, 65, 840
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 3 cut(s) 528, 669, 840
Bso31I GGTCTC 1 cut(s) 840
Bsp1286I GDGCHC 4 cut(s) 412, 501, 617, 857
Bsp143I GATC 5 cut(s) 184, 329, 547, 624, 762
BspACI CCGC 1 cut(s) 223
BspANI GGCC 3 cut(s) 528, 669, 840
BspCNI CTCAG 1 cut(s) 293
BspPI GGATC 2 cut(s) 337, 555
BspTNI GGTCTC 1 cut(s) 840
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 2 cut(s) 643, 807
BssECI CCNNGG 3 cut(s) 564, 841, 850
BssMI GATC 5 cut(s) 184, 329, 547, 624, 762
Bst2UI CCWGG 2 cut(s) 690, 851
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 888
BstDEI CTNAG 3 cut(s) 67, 280, 756
BstDSI CCRYGG 2 cut(s) 564, 841
BstF5I GGATG 2 cut(s) 121, 271
BstKTI GATC 5 cut(s) 187, 332, 550, 627, 765
BstMAI GTCTC 3 cut(s) 49, 65, 840
BstMBI GATC 5 cut(s) 184, 329, 547, 624, 762
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNI CCWGG 2 cut(s) 690, 851
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 2 cut(s) 688, 849
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 50, 881
BstX2I RGATCY 2 cut(s) 329, 547
BstYI RGATCY 2 cut(s) 329, 547
BsuRI GGCC 3 cut(s) 528, 669, 840
BtgI CCRYGG 2 cut(s) 564, 841
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 121, 271
BtsIMutI CAGTG 1 cut(s) 578
Cac8I GCNNGC 1 cut(s) 888
Csp6I GTAC 2 cut(s) 558, 703
CviAII CATG 2 cut(s) 102, 597
CviQI GTAC 2 cut(s) 558, 703
DdeI CTNAG 3 cut(s) 67, 280, 756
DpnI GATC 5 cut(s) 186, 331, 549, 626, 764
DpnII GATC 5 cut(s) 184, 329, 547, 624, 762
DraI TTTAAA 1 cut(s) 657
DraIII CACNNNGTG 1 cut(s) 836
EaeI YGGCCR 2 cut(s) 667, 838
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco24I GRGCYC 2 cut(s) 617, 857
Eco31I GGTCTC 1 cut(s) 840
Eco32I GATATC 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 825
EcoRII CCWGG 2 cut(s) 688, 849
EcoRV GATATC 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 174
EcoT38I GRGCYC 2 cut(s) 617, 857
FaeI CATG 2 cut(s) 105, 600
FaqI GGGAC 1 cut(s) 106
FatI CATG 2 cut(s) 101, 596
FauNDI CATATG 3 cut(s) 160, 346, 374
Fnu4HI GCNGC 2 cut(s) 64, 870
FokI GGATG 2 cut(s) 108, 258
FriOI GRGCYC 2 cut(s) 617, 857
Fsp4HI GCNGC 2 cut(s) 64, 870
FspBI CTAG 7 cut(s) 413, 462, 524, 551, 683, 717, 895
GluI GCNGC 2 cut(s) 64, 870
GsaI CCCAGC 1 cut(s) 869
HaeIII GGCC 3 cut(s) 528, 669, 840
Hin1II CATG 2 cut(s) 105, 600
HincII GTYRAC 2 cut(s) 18, 295
HindII GTYRAC 2 cut(s) 18, 295
HinfI GANTC 6 cut(s) 6, 73, 265, 533, 713, 859
HpaI GTTAAC 1 cut(s) 18
Hpy166II GTNNAC 2 cut(s) 18, 295
Hpy188I TCNGA 2 cut(s) 326, 358
Hpy188III TCNNGA 2 cut(s) 244, 462
Hpy8I GTNNAC 2 cut(s) 18, 295
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 5 cut(s) 78, 297, 556, 701, 832
HpyCH4V TGCA 5 cut(s) 158, 172, 310, 344, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 3 cut(s) 67, 280, 756
HpySE526I ACGT 5 cut(s) 78, 297, 556, 701, 832
Hsp92II CATG 2 cut(s) 105, 600
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 5 cut(s) 184, 329, 547, 624, 762
LmnI GCTCC 2 cut(s) 496, 642
LpnPI CCDG 7 cut(s) 624, 675, 702, 820, 836, 863, 879
Lsp1109I GCAGC 2 cut(s) 50, 881
LweI GCATC 1 cut(s) 873
MaeI CTAG 7 cut(s) 413, 462, 524, 551, 683, 717, 895
MaeII ACGT 5 cut(s) 78, 297, 556, 701, 832
MalI GATC 5 cut(s) 186, 331, 549, 626, 764
MboI GATC 5 cut(s) 184, 329, 547, 624, 762
MboII GAAGA 4 cut(s) 160, 213, 634, 772
MfeI CAATTG 1 cut(s) 671
MflI RGATCY 2 cut(s) 329, 547
MhlI GDGCHC 4 cut(s) 412, 501, 617, 857
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 7 cut(s) 228, 254, 671, 731, 780, 802, 825
MluNI TGGCCA 1 cut(s) 669
MlyI GAGTC 3 cut(s) 67, 259, 542
MnlI CCTC 6 cut(s) 58, 127, 135, 289, 320, 781
Mox20I TGGCCA 1 cut(s) 669
Mph1103I ATGCAT 1 cut(s) 174
MscI TGGCCA 1 cut(s) 669
MseI TTAA 4 cut(s) 17, 137, 369, 656
MslI CAYNNNNRTG 2 cut(s) 377, 483
Msp20I TGGCCA 1 cut(s) 669
MspR9I CCNGG 2 cut(s) 690, 851
MunI CAATTG 1 cut(s) 671
MvaI CCWGG 2 cut(s) 690, 851
MwoI GCNNNNNNNGC 1 cut(s) 307
NdeI CATATG 3 cut(s) 160, 346, 374
NdeII GATC 5 cut(s) 184, 329, 547, 624, 762
NlaIII CATG 2 cut(s) 105, 600
NmeAIII GCCGAG 1 cut(s) 554
NsiI ATGCAT 1 cut(s) 174
NspI RCATGY 1 cut(s) 600
PciI ACATGT 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 838
PfeI GAWTC 3 cut(s) 6, 713, 859
PflMI CCANNNNNTGG 1 cut(s) 836
PkrI GCNGC 2 cut(s) 65, 871
PleI GAGTC 3 cut(s) 67, 259, 541
PpsI GAGTC 3 cut(s) 67, 259, 541
PscI ACATGT 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 688, 849
PspFI CCCAGC 1 cut(s) 865
PspGI CCWGG 2 cut(s) 688, 849
PsuI RGATCY 2 cut(s) 329, 547
RsaI GTAC 2 cut(s) 559, 704
RsaNI GTAC 2 cut(s) 558, 703
RseI CAYNNNNRTG 2 cut(s) 377, 483
SaqAI TTAA 4 cut(s) 17, 137, 369, 656
SatI GCNGC 2 cut(s) 64, 870
Sau3AI GATC 5 cut(s) 184, 329, 547, 624, 762
SchI GAGTC 3 cut(s) 67, 259, 542
ScrFI CCNGG 2 cut(s) 690, 851
SduI GDGCHC 4 cut(s) 412, 501, 617, 857
SfaNI GCATC 1 cut(s) 873
SmiMI CAYNNNNRTG 2 cut(s) 377, 483
Sse9I AATT 7 cut(s) 228, 254, 671, 731, 780, 802, 825
SsiI CCGC 1 cut(s) 223
SspI AATATT 1 cut(s) 591
SspMI CTAG 7 cut(s) 413, 462, 524, 551, 683, 717, 895
StyD4I CCNGG 2 cut(s) 688, 849
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 5 cut(s) 81, 300, 559, 704, 835
TaqI TCGA 4 cut(s) 9, 237, 765, 857
TasI AATT 7 cut(s) 228, 254, 671, 731, 780, 802, 825
TfiI GAWTC 3 cut(s) 6, 713, 859
Tru1I TTAA 4 cut(s) 17, 137, 369, 656
Tru9I TTAA 4 cut(s) 17, 137, 369, 656
TscAI CASTG 1 cut(s) 585
TseI GCWGC 2 cut(s) 63, 869
TspDTI ATGAA 4 cut(s) 267, 342, 635, 637
TspGWI ACGGA 2 cut(s) 422, 581
TspRI CASTG 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 836
XapI RAATTY 3 cut(s) 254, 802, 825
XbaI TCTAGA 1 cut(s) 461
XceI RCATGY 1 cut(s) 600
XcmI CCANNNNNNNNNTGG 1 cut(s) 814
XspI CTAG 7 cut(s) 413, 462, 524, 551, 683, 717, 895
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.