Rh2DG321300

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000125
Physical Location & Seq
Forward (+)
40162854 .. 40163993
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG321300.1

Sequence Viewer

Length: 999 bp
ATGGGCTACACGGACGAGGTACCTCTTCTCATGTCTTTTGCTAAACATTATGCTTCTGAGACCAATGCAGTTATAGCATCCTTGCAATCAGTCACATACGATGGCAGTGGCAGTGCCTTGACAGCAAGAGGTCAATATGCATTTCAAGTCTCCACAACATACCAGCGAGATCCTCCACCTTACTCCATAGATTTTGTTTTCCGCAACTTGTTTTGCTTTCGAAATAGATGTGATCATGGAGTTTGTTTTTTGATCAATCCTCTGAGAGGACAAGTTCTAAGGCTTCCTAGGAATGATATTTCCAAAATTGCAGTGTCCCAAGTAATCTATGACTGGTATGGTATGGGATTTGATAGTATAACTAACACCCTCAAGATTCTTGCTGTCGCCGAATTTGGCCAATTTGTTAAGCCTATCTGCCGAGCAGCCCAGGTTCTTGTATTGGGCACAGGCTCATGGCGAGATAAAGAAAAGTTCTATTGGACTCCTCACCCCGCTGCACAAAGCTCAAACAATTACTGGCATTTGTATTTGCTTACTTTCAGAGGATCTCTGGCCATCGTGGATACTTCTTCATCACAAGGTATGATTACGAAGATTGATATATGGGTATTGAAAGATTATGACAAAAAAGAGTGGGCAAGAGATTACAGCATAGACATCAAAAATTTTGACTTGGTTAGGCAGTTTGGATTGTTGATAAAGGTTACTTGTGGCCAATGGGAGCATGGCATATATTTCAAAAATTTTGACCAAATCCGTACGTTCTTTTTGGATCTAAGATGTTATTCCATGAATACCATAACATGTGGTAGTGGGGATCGTACCAAAATTTTGAGTTATACTAGGAGCTTGATATCCTTAAAAGATTATCAGAATTCTGTTGGAGCTGAAAACAGTACTGAAAGCCTAAAAAGTTATGGCAATTTGATCGAAGAAGAAGCACAAGGCTTTAGTTTATCTAAGACGCATGTGCTGCGAGGAGTTTCAGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

332

Amino Acids

37.78

Weight (kDa)

8.55

Isoelectric Point (pI)

24.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 64 - 157 8.8e-06 F-box associated beta propeller domain
FBA_3 PF08268 156 - 238 1.9e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AciI CCGC 2 cut(s) 202, 495
AclWI GGATC 4 cut(s) 164, 556, 783, 828
AcoI YGGCCR 3 cut(s) 397, 555, 715
AcsI RAATTY 5 cut(s) 392, 667, 745, 831, 877
AfaI GTAC 4 cut(s) 21, 763, 826, 901
AfiI CCNNNNNNNGG 1 cut(s) 266
AflIII ACRYGT 1 cut(s) 806
AgsI TTSAA 3 cut(s) 146, 616, 742
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 3 cut(s) 507, 852, 890
AluI AGCT 3 cut(s) 507, 852, 890
Alw26I GTCTC 2 cut(s) 53, 154
AlwI GGATC 4 cut(s) 164, 556, 783, 828
AoxI GGCC 3 cut(s) 397, 555, 715
ApeKI GCWGC 3 cut(s) 425, 497, 976
ApoI RAATTY 5 cut(s) 392, 667, 745, 831, 877
Asp718I GGTACC 1 cut(s) 19
AspA2I CCTAGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 482
AsuII TTCGAA 1 cut(s) 220
AvrII CCTAGG 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 449
BalI TGGCCA 3 cut(s) 399, 557, 717
BanI GGYRCC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 437, 484, 963
BccI CCATC 2 cut(s) 95, 566
BcgI CGANNNNNNTGC 2 cut(s) 913, 947
BciT130I CCWGG 1 cut(s) 431
BciVI GTATCC 1 cut(s) 559
BclI TGATCA 2 cut(s) 232, 252
BcoDI GTCTC 2 cut(s) 53, 154
BfaI CTAG 2 cut(s) 288, 846
BfuI GTATCC 1 cut(s) 559
BisI GCNGC 3 cut(s) 426, 498, 977
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 3 cut(s) 427, 499, 978
BmcAI AGTACT 1 cut(s) 901
Bme1390I CCNGG 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 1 cut(s) 86
Bpu14I TTCGAA 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 287, 429
BsaXI ACNNNNNCTCC 1 cut(s) 975
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 2 cut(s) 338, 524
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 2 cut(s) 287, 429
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 2 cut(s) 48, 254
BseNI ACTGG 2 cut(s) 338, 524
BseRI GAGGAG 2 cut(s) 477, 996
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 3 cut(s) 437, 484, 963
BsgI GTGCAG 1 cut(s) 483
BshFI GGCC 3 cut(s) 399, 557, 717
BshNI GGYRCC 1 cut(s) 19
BsiWI CGTACG 1 cut(s) 761
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 2 cut(s) 53, 154
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 3 cut(s) 399, 557, 717
Bso31I GGTCTC 1 cut(s) 53
Bsp119I TTCGAA 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 7 cut(s) 169, 232, 252, 548, 775, 820, 930
BspACI CCGC 2 cut(s) 202, 495
BspANI GGCC 3 cut(s) 399, 557, 717
BspCNI CTCAG 2 cut(s) 49, 255
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 4 cut(s) 164, 556, 783, 828
BspT104I TTCGAA 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 53
BsrI ACTGG 2 cut(s) 338, 524
BssECI CCNNGG 2 cut(s) 287, 429
BssMI GATC 7 cut(s) 169, 232, 252, 548, 775, 820, 930
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 899
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 976
BstBI TTCGAA 1 cut(s) 220
BstDEI CTNAG 5 cut(s) 57, 263, 278, 779, 963
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 77
BstKTI GATC 7 cut(s) 172, 235, 255, 551, 778, 823, 933
BstMAI GTCTC 2 cut(s) 53, 154
BstMBI GATC 7 cut(s) 169, 232, 252, 548, 775, 820, 930
BstMWI GCNNNNNNNGC 3 cut(s) 74, 122, 976
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 2 cut(s) 810, 974
BstSCI CCNGG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 437, 484, 963
BstX2I RGATCY 3 cut(s) 169, 548, 775
BstYI RGATCY 3 cut(s) 169, 548, 775
BsuI GTATCC 1 cut(s) 559
BsuRI GGCC 3 cut(s) 399, 557, 717
BtsCI GGATG 1 cut(s) 77
BtsI GCAGTG 3 cut(s) 112, 118, 318
BtsIMutI CAGTG 3 cut(s) 112, 118, 318
CseI GACGC 1 cut(s) 976
Csp6I GTAC 4 cut(s) 20, 762, 825, 900
CviAII CATG 7 cut(s) 31, 236, 456, 728, 793, 807, 971
CviQI GTAC 4 cut(s) 20, 762, 825, 900
DdeI CTNAG 5 cut(s) 57, 263, 278, 779, 963
DpnI GATC 7 cut(s) 171, 234, 254, 550, 777, 822, 932
DpnII GATC 7 cut(s) 169, 232, 252, 548, 775, 820, 930
EaeI YGGCCR 3 cut(s) 397, 555, 715
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 858
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 877
EcoRII CCWGG 1 cut(s) 429
EcoRV GATATC 1 cut(s) 858
EcoT14I CCWWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 7 cut(s) 34, 239, 459, 731, 796, 810, 974
FaqI GGGAC 1 cut(s) 301
FatI CATG 7 cut(s) 30, 235, 455, 727, 792, 806, 970
FauI CCCGC 1 cut(s) 502
FbaI TGATCA 2 cut(s) 232, 252
Fnu4HI GCNGC 3 cut(s) 426, 498, 977
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 3 cut(s) 426, 498, 977
FspBI CTAG 2 cut(s) 288, 846
GluI GCNGC 3 cut(s) 426, 498, 977
HaeIII GGCC 3 cut(s) 399, 557, 717
HgaI GACGC 1 cut(s) 976
Hin1II CATG 7 cut(s) 34, 239, 459, 731, 796, 810, 974
HinfI GANTC 2 cut(s) 376, 484
HphI GGTGA 1 cut(s) 482
Hpy188I TCNGA 5 cut(s) 58, 264, 545, 876, 998
Hpy188III TCNNGA 1 cut(s) 373
HpyCH4III ACNGT 1 cut(s) 899
HpyCH4IV ACGT 1 cut(s) 764
HpyCH4V TGCA 5 cut(s) 68, 85, 140, 311, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 122, 976
HpyF3I CTNAG 5 cut(s) 57, 263, 278, 779, 963
HpySE526I ACGT 1 cut(s) 764
Hsp92II CATG 7 cut(s) 34, 239, 459, 731, 796, 810, 974
KpnI GGTACC 1 cut(s) 23
Ksp22I TGATCA 2 cut(s) 232, 252
Kzo9I GATC 7 cut(s) 169, 232, 252, 548, 775, 820, 930
LmnI GCTCC 3 cut(s) 724, 849, 887
LpnPI CCDG 7 cut(s) 176, 319, 416, 435, 443, 505, 539
Lsp1109I GCAGC 3 cut(s) 437, 484, 963
LweI GCATC 1 cut(s) 86
MaeI CTAG 2 cut(s) 288, 846
MaeII ACGT 1 cut(s) 764
MaeIII GTNAC 2 cut(s) 91, 706
MalI GATC 7 cut(s) 171, 234, 254, 550, 777, 822, 932
MboI GATC 7 cut(s) 169, 232, 252, 548, 775, 820, 930
MboII GAAGA 5 cut(s) 17, 564, 607, 947, 950
MflI RGATCY 3 cut(s) 169, 548, 775
MhlI GDGCHC 1 cut(s) 449
MlsI TGGCCA 3 cut(s) 399, 557, 717
MluCI AATT 9 cut(s) 306, 392, 401, 514, 667, 745, 831, 877, 925
MluNI TGGCCA 3 cut(s) 399, 557, 717
MlyI GAGTC 1 cut(s) 478
MmeI TCCRAC 1 cut(s) 865
Mox20I TGGCCA 3 cut(s) 399, 557, 717
Mph1103I ATGCAT 1 cut(s) 142
MscI TGGCCA 3 cut(s) 399, 557, 717
MseI TTAA 2 cut(s) 408, 863
Msp20I TGGCCA 3 cut(s) 399, 557, 717
MspA1I CMGCKG 1 cut(s) 497
MspR9I CCNGG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 74, 122, 976
NdeII GATC 7 cut(s) 169, 232, 252, 548, 775, 820, 930
NlaIII CATG 7 cut(s) 34, 239, 459, 731, 796, 810, 974
NlaIV GGNNCC 1 cut(s) 21
NmeAIII GCCGAG 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 2 cut(s) 810, 974
NspV TTCGAA 1 cut(s) 220
PciI ACATGT 1 cut(s) 806
PfeI GAWTC 1 cut(s) 376
Pfl23II CGTACG 1 cut(s) 761
PkrI GCNGC 3 cut(s) 427, 499, 978
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
PscI ACATGT 1 cut(s) 806
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspLI CGTACG 1 cut(s) 761
PspN4I GGNNCC 1 cut(s) 21
PsuI RGATCY 3 cut(s) 169, 548, 775
RsaI GTAC 4 cut(s) 21, 763, 826, 901
RsaNI GTAC 4 cut(s) 20, 762, 825, 900
SaqAI TTAA 2 cut(s) 408, 863
SatI GCNGC 3 cut(s) 426, 498, 977
Sau3AI GATC 7 cut(s) 169, 232, 252, 548, 775, 820, 930
ScaI AGTACT 1 cut(s) 901
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 1 cut(s) 449
SfaNI GCATC 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 9 cut(s) 306, 392, 401, 514, 667, 745, 831, 877, 925
SsiI CCGC 2 cut(s) 202, 495
SspMI CTAG 2 cut(s) 288, 846
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 899
TaiI ACGT 1 cut(s) 767
TaqI TCGA 2 cut(s) 220, 933
TasI AATT 9 cut(s) 306, 392, 401, 514, 667, 745, 831, 877, 925
TatI WGTACW 1 cut(s) 899
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 2 cut(s) 408, 863
Tru9I TTAA 2 cut(s) 408, 863
TscAI CASTG 3 cut(s) 112, 118, 318
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 3 cut(s) 425, 497, 976
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 564, 809
TspGWI ACGGA 2 cut(s) 26, 749
TspRI CASTG 3 cut(s) 112, 118, 318
XagI CCTNNNNNAGG 1 cut(s) 264
XapI RAATTY 5 cut(s) 392, 667, 745, 831, 877
XceI RCATGY 2 cut(s) 810, 974
XcmI CCANNNNNNNNNTGG 1 cut(s) 725
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 2 cut(s) 288, 846
ZrmI AGTACT 1 cut(s) 901
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.