FvH4_4g22410

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000125
Physical Location & Seq
Forward (+)
25251955 .. 25253553
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22410.t1

Sequence Viewer

Length: 1056 bp
ATGGCAGGTGTAGGAAGAGATTTTTTAACCGTATGCGTCGATGTCTCAAAGTACATAATGCCCCATCTTCTTCTAGTCTTCTCAATCGAATGGCTGGAGAAGAAGCAGAGAGAAGCAAATCCTCCTGGAACGTTTAAGTTGTTCAACATGCCAGATGATATCATTATGGATATCCTAATGAGACTGCCCTTGAGATCACTCTGTTGTCTTCGATGTGTCTCCAAGGCTTGTTTGGATATGGTTGATTCCCCCAGTTTCACTACATTGCACAGGGAACGTTTACTGAAGATGTCTTCCAACGACTATGTTGCTGCAGCTTCTTCGGAAGTACCTCAACTTATACAGCTTCAGTATAATTACCCATCTATAAAATGGCAGCCACTGGAAATTGATGACGAGTGCCGTTTGACGCAGACGAAATATCCTCTCCATGTCTCAAAGATGTTCAACGCATTAGATTTTGTTTTCTGCAACTTGTTTTTCTTTCAGAGAAACCTACGGGAATATATGGAGAGCATCAACCCCAATTCTTACTACTTAATCGACCCCCTAAGGAGAGAAGGTCTAAGAATCCCACACTGTCCTACTAATCATAAGGACTTGGTGCATCAGTTTGGTATGGGTTTTGATAATACAACCAACACTTACAAAATTGTTTGCGTTTCGGGGAGTCTCGAAAATCACCATGCGACGACTCATATTTATGTATTAGGCACTGAATCGTCCTCATGGCGAGAGATATGGTCAGTTGCTCCTCGTCCTTTAAGCGGAAAAAATGTGTGTGCATATGGAGACATGCATTGGTTGGTCGAAGAAGCAGGAAGTCATGTTAATGTTGCAGGAGGAAGCCACATAATTTCTTTCGACTTCAAGAAAGAAGAGTTCTGCTGGACTCCTCATCCCACCTTAAAAAGGTTGAGACCCGGATTTGGAAACTCTCGTTTGCTTGAAGACTTGCACTTGCTTAATATGAAAGGATCTATGGCTATGGTGGATACTAATTCATCTAAAGAATATATTGACATTTGGGTAGTTAAAAGTTACCTCAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

352

Amino Acids

40.48

Weight (kDa)

7.2

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 47 - 87 7.6e-09 F-box domain
FBA_3 PF08268 173 - 346 3.3e-19 F-box associated beta propeller domain
FBA_1 PF07734 183 - 347 3.2e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 768
AclI AACGTT 2 cut(s) 131, 277
AclWI GGATC 1 cut(s) 985
AcuI CTGAAG 2 cut(s) 305, 332
AfaI GTAC 2 cut(s) 53, 330
AfiI CCNNNNNNNGG 3 cut(s) 767, 912, 929
AgsI TTSAA 4 cut(s) 145, 448, 871, 950
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 2 cut(s) 317, 346
AluI AGCT 2 cut(s) 317, 346
Alw26I GTCTC 7 cut(s) 49, 175, 223, 439, 677, 786, 913
AlwI GGATC 1 cut(s) 985
AlwNI CAGNNNCTG 1 cut(s) 382
ApeKI GCWGC 3 cut(s) 311, 314, 376
AsuC2I CCSGG 1 cut(s) 924
AsuHPI GGTGA 1 cut(s) 674
AxyI CCTNAGG 1 cut(s) 551
BbsI GAAGAC 4 cut(s) 70, 200, 285, 957
BbvI GCAGC 3 cut(s) 298, 326, 388
BccI CCATC 2 cut(s) 72, 370
BceAI ACGGC 1 cut(s) 387
BcgI CGANNNNNNTGC 4 cut(s) 290, 303, 324, 337
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 988
BcnI CCSGG 1 cut(s) 924
BcoDI GTCTC 7 cut(s) 49, 175, 223, 439, 677, 786, 913
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 312
BfuI GTATCC 1 cut(s) 988
BisI GCNGC 3 cut(s) 312, 315, 377
BlsI GCNGC 3 cut(s) 313, 316, 378
Bme1390I CCNGG 2 cut(s) 126, 924
BmrFI CCNGG 2 cut(s) 126, 924
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 525, 616
BmuI ACTGGG 1 cut(s) 246
BpiI GAAGAC 4 cut(s) 70, 200, 285, 957
BpmI CTGGAG 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 211, 1031
BpuMI CCSGG 1 cut(s) 924
BsaI GGTCTC 1 cut(s) 913
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 3 cut(s) 767, 912, 929
Bse1I ACTGG 2 cut(s) 252, 387
Bse21I CCTNAGG 1 cut(s) 551
Bse3DI GCAATG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 898
BseLI CCNNNNNNNGG 3 cut(s) 767, 912, 929
BseMI GCAATG 1 cut(s) 263
BseNI ACTGG 2 cut(s) 252, 387
BseRI GAGGAG 2 cut(s) 744, 885
BseXI GCAGC 3 cut(s) 298, 326, 388
BsiSI CCGG 1 cut(s) 924
BslI CCNNNNNNNGG 3 cut(s) 767, 912, 929
BsmAI GTCTC 7 cut(s) 49, 175, 223, 439, 677, 786, 913
Bso31I GGTCTC 1 cut(s) 913
Bsp143I GATC 2 cut(s) 194, 977
BspACI CCGC 1 cut(s) 768
BspMAI CTGCAG 1 cut(s) 316
BspPI GGATC 1 cut(s) 985
BspTNI GGTCTC 1 cut(s) 913
BsrDI GCAATG 1 cut(s) 263
BsrI ACTGG 2 cut(s) 252, 387
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 2 cut(s) 194, 977
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 31, 581
Bst6I CTCTTC 2 cut(s) 10, 873
BstDEI CTNAG 2 cut(s) 551, 566
BstENI CCTNNNNNAGG 1 cut(s) 910
BstF5I GGATG 1 cut(s) 898
BstKTI GATC 2 cut(s) 197, 980
BstMAI GTCTC 7 cut(s) 49, 175, 223, 439, 677, 786, 913
BstMBI GATC 2 cut(s) 194, 977
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 2 cut(s) 151, 799
BstSCI CCNGG 2 cut(s) 124, 922
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 298, 326, 388
BstV2I GAAGAC 4 cut(s) 70, 200, 285, 957
BstX2I RGATCY 1 cut(s) 977
BstYI RGATCY 1 cut(s) 977
Bsu36I CCTNAGG 1 cut(s) 551
BsuI GTATCC 1 cut(s) 988
BtsCI GGATG 1 cut(s) 898
BtsIMutI CAGTG 3 cut(s) 380, 577, 714
CaiI CAGNNNCTG 1 cut(s) 382
CseI GACGC 2 cut(s) 25, 418
Csp6I GTAC 2 cut(s) 52, 329
CviAII CATG 6 cut(s) 148, 431, 686, 729, 796, 827
CviJI RGCY 7 cut(s) 94, 227, 317, 346, 379, 849, 986
CviKI_1 RGCY 7 cut(s) 94, 227, 317, 346, 379, 849, 986
CviQI GTAC 2 cut(s) 52, 329
DdeI CTNAG 2 cut(s) 551, 566
DpnI GATC 2 cut(s) 196, 979
DpnII GATC 2 cut(s) 194, 977
Eam1104I CTCTTC 2 cut(s) 10, 873
EarI CTCTTC 2 cut(s) 10, 873
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 913
Eco32I GATATC 2 cut(s) 160, 172
Eco57I CTGAAG 2 cut(s) 305, 332
Eco81I CCTNAGG 1 cut(s) 551
EcoNI CCTNNNNNAGG 1 cut(s) 910
EcoRII CCWGG 1 cut(s) 124
EcoRV GATATC 2 cut(s) 160, 172
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 6 cut(s) 151, 434, 689, 732, 799, 830
FatI CATG 6 cut(s) 147, 430, 685, 728, 795, 826
FauNDI CATATG 1 cut(s) 787
Fnu4HI GCNGC 3 cut(s) 312, 315, 377
FokI GGATG 1 cut(s) 885
Fsp4HI GCNGC 3 cut(s) 312, 315, 377
FspBI CTAG 1 cut(s) 74
GluI GCNGC 3 cut(s) 312, 315, 377
GsuI CTGGAG 1 cut(s) 116
HapII CCGG 1 cut(s) 924
HgaI GACGC 2 cut(s) 25, 418
Hin1II CATG 6 cut(s) 151, 434, 689, 732, 799, 830
HinfI GANTC 6 cut(s) 245, 570, 670, 694, 719, 892
HpaII CCGG 1 cut(s) 924
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 325, 489
Hpy188III TCNNGA 3 cut(s) 674, 871, 1048
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 2 cut(s) 41, 694
HpyAV CCTTC 1 cut(s) 554
HpyCH4III ACNGT 2 cut(s) 31, 581
HpyCH4IV ACGT 2 cut(s) 131, 277
HpyCH4V TGCA 8 cut(s) 268, 314, 471, 607, 785, 799, 839, 958
HpyF3I CTNAG 2 cut(s) 551, 566
HpySE526I ACGT 2 cut(s) 131, 277
Hsp92II CATG 6 cut(s) 151, 434, 689, 732, 799, 830
Kzo9I GATC 2 cut(s) 194, 977
LmnI GCTCC 1 cut(s) 757
Lsp1109I GCAGC 3 cut(s) 298, 326, 388
LweI GCATC 2 cut(s) 525, 616
MaeI CTAG 1 cut(s) 74
MaeII ACGT 2 cut(s) 131, 277
MaeIII GTNAC 1 cut(s) 1040
MalI GATC 2 cut(s) 196, 979
MboI GATC 2 cut(s) 194, 977
MflI RGATCY 1 cut(s) 977
MluCI AATT 6 cut(s) 355, 387, 526, 651, 855, 1000
MlyI GAGTC 3 cut(s) 679, 688, 886
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 8 cut(s) 132, 342, 435, 736, 765, 836, 906, 1055
Mph1103I ATGCAT 1 cut(s) 801
MseI TTAA 8 cut(s) 26, 135, 539, 764, 831, 908, 966, 1035
MslI CAYNNNNRTG 2 cut(s) 702, 831
MspI CCGG 1 cut(s) 924
MspR9I CCNGG 2 cut(s) 126, 924
MvaI CCWGG 1 cut(s) 126
NciI CCSGG 1 cut(s) 924
NdeI CATATG 1 cut(s) 787
NdeII GATC 2 cut(s) 194, 977
NlaIII CATG 6 cut(s) 151, 434, 689, 732, 799, 830
NsiI ATGCAT 1 cut(s) 801
NspI RCATGY 2 cut(s) 151, 799
PfeI GAWTC 3 cut(s) 245, 570, 719
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 3 cut(s) 313, 316, 378
PleI GAGTC 3 cut(s) 678, 688, 886
PpsI GAGTC 3 cut(s) 678, 688, 886
Psp1406I AACGTT 2 cut(s) 131, 277
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 977
RsaI GTAC 2 cut(s) 53, 330
RsaNI GTAC 2 cut(s) 52, 329
RseI CAYNNNNRTG 2 cut(s) 702, 831
SaqAI TTAA 8 cut(s) 26, 135, 539, 764, 831, 908, 966, 1035
SatI GCNGC 3 cut(s) 312, 315, 377
Sau3AI GATC 2 cut(s) 194, 977
SchI GAGTC 3 cut(s) 679, 688, 886
ScrFI CCNGG 2 cut(s) 126, 924
SfaNI GCATC 2 cut(s) 525, 616
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 2 cut(s) 702, 831
SmlI CTYRAG 2 cut(s) 190, 1046
SmoI CTYRAG 2 cut(s) 190, 1046
Sse9I AATT 6 cut(s) 355, 387, 526, 651, 855, 1000
SsiI CCGC 1 cut(s) 768
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 124, 922
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 31, 581
TaiI ACGT 2 cut(s) 134, 280
TaqI TCGA 7 cut(s) 39, 87, 211, 543, 675, 810, 864
TasI AATT 6 cut(s) 355, 387, 526, 651, 855, 1000
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 3 cut(s) 245, 570, 719
Tru1I TTAA 8 cut(s) 26, 135, 539, 764, 831, 908, 966, 1035
Tru9I TTAA 8 cut(s) 26, 135, 539, 764, 831, 908, 966, 1035
TscAI CASTG 3 cut(s) 387, 584, 721
TseI GCWGC 3 cut(s) 311, 314, 376
TspDTI ATGAA 2 cut(s) 986, 993
TspRI CASTG 3 cut(s) 387, 584, 721
XagI CCTNNNNNAGG 1 cut(s) 910
XceI RCATGY 2 cut(s) 151, 799
XcmI CCANNNNNNNNNTGG 2 cut(s) 229, 369
XspI CTAG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.