RLG00000005189

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000125
Physical Location & Seq
Reverse (-)
65728211 .. 65729087
877 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005189

Sequence Viewer

Length: 786 bp
ATGGACAAGCTACCAAATAAATTTGTTTTCTACAACTTGTTTTGCATCGCACTGGAGAATGAACACTGCTTGTTGATCAATCCTCTTATTAGAGAAGTTCGAAGTCTCCCAACCAATATTAACATCGAACAACTTACAAAGATTCTCAATAAGGAATTACCTTATAGAACCCTCGGCATGTTTGCGCATATTCTTGTATTGGGCACGAACTCATGGAGAGAAATACCATCTGTTCCTCCCTGTGGTTTAAATTGCGCGTTTAATCTTTGTGCATACGGAGATATGCACTGGCTGAAGAAAAACAGAGTAACAGGTGTAACAAAAAGCCATACACTTTCTTTCGACTTCCAAAAAGAAGAGTTTTATTGGACTCCTACTCTCCCCACGTTGCAAAGCTCGAACAAGGACTCCAACTTGAACTTGCTTACTGTAAGAGGATCGATGGCCATTGTGGAGACTTTTTCATCACCAGAAGGAGGTATGAATGTTGAGATATGGGTGTTGAAAGATTATATCGACATGCATCCAGAGTTTGAGTTGAAGTATGCCTATTGTGGTGAATGGGAGCATGGCACATTTTTCAACGATCATAACGGTTCTTTCAAGTCCGATAGTATGACTAGATTCTTTTTGGATCTTAGATGTGCTTCCGTCAATATTGTGGTATGCCTACTGGAGACCGAGGAGTCTACAATCATTATGAGTTACACTGGGAGCTTGATTTCCTGGAGAGATTATGGTACTTTAGGTTACACTGATGAGCCTCATGATGAATTGGTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

262

Amino Acids

30.02

Weight (kDa)

5.17

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 13 - 230 3.4e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 685
Acc16I TGCGCA 1 cut(s) 186
AccI GTMKAC 1 cut(s) 689
AccII CGCG 1 cut(s) 257
AclWI GGATC 2 cut(s) 445, 642
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 1 cut(s) 742
AfiI CCNNNNNNNGG 2 cut(s) 242, 476
AgsI TTSAA 5 cut(s) 418, 505, 541, 583, 604
AjnI CCWGG 1 cut(s) 725
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 3 cut(s) 10, 396, 717
AluI AGCT 3 cut(s) 10, 396, 717
Alw26I GTCTC 3 cut(s) 110, 449, 671
AlwI GGATC 2 cut(s) 445, 642
AoxI GGCC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 20
AspLEI GCGC 2 cut(s) 187, 257
AsuHPI GGTGA 2 cut(s) 459, 569
AsuII TTCGAA 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 446
BccI CCATC 2 cut(s) 235, 436
BciT130I CCWGG 1 cut(s) 727
BclI TGATCA 1 cut(s) 75
BcoDI GTCTC 3 cut(s) 110, 449, 671
BfaI CTAG 1 cut(s) 621
Bme1390I CCNGG 1 cut(s) 727
BmrFI CCNGG 1 cut(s) 727
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 2 cut(s) 54, 532
BmuI ACTGGG 1 cut(s) 720
BpmI CTGGAG 3 cut(s) 74, 695, 748
Bpu14I TTCGAA 1 cut(s) 100
Bsa29I ATCGAT 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 2 cut(s) 172, 681
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 476
Bse1I ACTGG 4 cut(s) 57, 293, 678, 715
BseBI CCWGG 1 cut(s) 727
BseCI ATCGAT 1 cut(s) 440
BseDI CCNNGG 2 cut(s) 172, 681
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 2 cut(s) 242, 476
BseNI ACTGG 4 cut(s) 57, 293, 678, 715
BseRI GAGGAG 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 446
BshVI ATCGAT 1 cut(s) 440
BslI CCNNNNNNNGG 2 cut(s) 242, 476
BsmAI GTCTC 3 cut(s) 110, 449, 671
BsnI GGCC 1 cut(s) 446
Bso31I GGTCTC 1 cut(s) 671
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 4 cut(s) 75, 437, 586, 634
BspANI GGCC 1 cut(s) 446
BspDI ATCGAT 1 cut(s) 440
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 766
BspPI GGATC 2 cut(s) 445, 642
BspT104I TTCGAA 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 671
BsrI ACTGG 4 cut(s) 57, 293, 678, 715
BssECI CCNNGG 2 cut(s) 172, 681
BssMI GATC 4 cut(s) 75, 437, 586, 634
Bst2UI CCWGG 1 cut(s) 727
Bst4CI ACNGT 2 cut(s) 430, 596
Bst6I CTCTTC 1 cut(s) 351
BstBI TTCGAA 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 638
BstF5I GGATG 1 cut(s) 523
BstFNI CGCG 1 cut(s) 257
BstHHI GCGC 2 cut(s) 187, 257
BstKTI GATC 4 cut(s) 78, 440, 589, 637
BstMAI GTCTC 3 cut(s) 110, 449, 671
BstMBI GATC 4 cut(s) 75, 437, 586, 634
BstNI CCWGG 1 cut(s) 727
BstNSI RCATGY 2 cut(s) 181, 523
BstSCI CCNGG 1 cut(s) 725
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
Bsu15I ATCGAT 1 cut(s) 440
BsuRI GGCC 1 cut(s) 446
BsuTUI ATCGAT 1 cut(s) 440
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 5 cut(s) 50, 64, 286, 708, 753
CciI TCATGA 1 cut(s) 766
CfoI GCGC 2 cut(s) 187, 257
ClaI ATCGAT 1 cut(s) 440
Csp6I GTAC 1 cut(s) 741
CviAII CATG 5 cut(s) 178, 213, 520, 569, 767
CviJI RGCY 7 cut(s) 10, 292, 327, 396, 446, 717, 763
CviKI_1 RGCY 7 cut(s) 10, 292, 327, 396, 446, 717, 763
CviQI GTAC 1 cut(s) 741
DdeI CTNAG 1 cut(s) 638
DpnI GATC 4 cut(s) 77, 439, 588, 636
DpnII GATC 4 cut(s) 75, 437, 586, 634
DraI TTTAAA 1 cut(s) 249
DrdI GACNNNNNNGTC 1 cut(s) 685
DseDI GACNNNNNNGTC 1 cut(s) 685
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 725
EcoT22I ATGCAT 1 cut(s) 525
FaeI CATG 5 cut(s) 181, 216, 523, 572, 770
FatI CATG 5 cut(s) 177, 212, 519, 568, 766
FbaI TGATCA 1 cut(s) 75
FblI GTMKAC 1 cut(s) 689
FokI GGATG 1 cut(s) 510
FspBI CTAG 1 cut(s) 621
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 2 cut(s) 186, 256
GsuI CTGGAG 3 cut(s) 74, 695, 748
HaeIII GGCC 1 cut(s) 446
HhaI GCGC 2 cut(s) 187, 257
Hin1II CATG 5 cut(s) 181, 216, 523, 572, 770
Hin6I GCGC 2 cut(s) 185, 255
HinP1I GCGC 2 cut(s) 185, 255
HinfI GANTC 5 cut(s) 142, 370, 407, 624, 686
HphI GGTGA 2 cut(s) 459, 569
Hpy166II GTNNAC 1 cut(s) 690
Hpy188I TCNGA 1 cut(s) 610
Hpy188III TCNNGA 2 cut(s) 527, 767
Hpy8I GTNNAC 1 cut(s) 690
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 2 cut(s) 430, 596
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 5 cut(s) 45, 272, 286, 391, 523
HpyF3I CTNAG 1 cut(s) 638
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 5 cut(s) 181, 216, 523, 572, 770
HspAI GCGC 2 cut(s) 185, 255
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 4 cut(s) 75, 437, 586, 634
LmnI GCTCC 2 cut(s) 565, 714
LweI GCATC 2 cut(s) 54, 532
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 5 cut(s) 307, 316, 704, 749, 778
MalI GATC 4 cut(s) 77, 439, 588, 636
MboI GATC 4 cut(s) 75, 437, 586, 634
MboII GAAGA 2 cut(s) 307, 368
MflI RGATCY 1 cut(s) 634
MhlI GDGCHC 1 cut(s) 206
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 4 cut(s) 20, 155, 250, 773
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 3 cut(s) 364, 401, 695
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 7 cut(s) 93, 182, 246, 428, 470, 676, 774
Mox20I TGGCCA 1 cut(s) 446
Mph1103I ATGCAT 1 cut(s) 525
MscI TGGCCA 1 cut(s) 446
MseI TTAA 3 cut(s) 120, 248, 261
Msp20I TGGCCA 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 727
MvaI CCWGG 1 cut(s) 727
MvnI CGCG 1 cut(s) 257
NdeII GATC 4 cut(s) 75, 437, 586, 634
NlaIII CATG 5 cut(s) 181, 216, 523, 572, 770
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 778
NsbI TGCGCA 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 525
NspI RCATGY 2 cut(s) 181, 523
NspV TTCGAA 1 cut(s) 100
PagI TCATGA 1 cut(s) 766
PfeI GAWTC 2 cut(s) 142, 624
PfoI TCCNGGA 1 cut(s) 725
PleI GAGTC 3 cut(s) 364, 401, 694
PpsI GAGTC 3 cut(s) 364, 401, 694
Psp6I CCWGG 1 cut(s) 725
PspGI CCWGG 1 cut(s) 725
PsuI RGATCY 1 cut(s) 634
RsaI GTAC 1 cut(s) 742
RsaNI GTAC 1 cut(s) 741
SaqAI TTAA 3 cut(s) 120, 248, 261
Sau3AI GATC 4 cut(s) 75, 437, 586, 634
SchI GAGTC 3 cut(s) 364, 401, 695
ScrFI CCNGG 1 cut(s) 727
SduI GDGCHC 1 cut(s) 206
SetI ASST 8 cut(s) 12, 163, 316, 389, 398, 481, 719, 751
SfaNI GCATC 2 cut(s) 54, 532
SfuI TTCGAA 1 cut(s) 100
Sse9I AATT 4 cut(s) 20, 155, 250, 773
SspI AATATT 2 cut(s) 118, 658
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 725
TaaI ACNGT 2 cut(s) 430, 596
TaiI ACGT 1 cut(s) 389
TaqI TCGA 6 cut(s) 100, 126, 342, 398, 440, 516
TaqII GACCGA 1 cut(s) 695
TasI AATT 4 cut(s) 20, 155, 250, 773
TfiI GAWTC 2 cut(s) 142, 624
Tru1I TTAA 3 cut(s) 120, 248, 261
Tru9I TTAA 3 cut(s) 120, 248, 261
TscAI CASTG 5 cut(s) 57, 71, 293, 715, 760
TseFI GTSAC 1 cut(s) 778
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 4 cut(s) 75, 453, 497, 786
TspGWI ACGGA 2 cut(s) 291, 640
TspRI CASTG 5 cut(s) 57, 71, 293, 715, 760
XapI RAATTY 1 cut(s) 20
XceI RCATGY 2 cut(s) 181, 523
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 1 cut(s) 621
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.