Rroxscaffold_6G00427650

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000125
Physical Location & Seq
Forward (+)
48225579 .. 48229993
4415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427650.1

Sequence Viewer

Length: 1038 bp
ATGCTTCTTGCACAATCCTCACTGCATCGTGCAATAAATTTGCAGTCATTGAAGTACAATGGCAGTAACTGCTCCACGAAGACCAATTTTGCTGATCTTGTCTTCACAGATTATTTGTATAACTACGATGTAGAATTTGTCTTCGGCAATTTGTTTGGAATTAGTAGGAGACGGATGGTCAGAAAAGAGCTGTGCTACTTGGTCAATCCTCTTAGGGGAGAAGTACTAAAGCTCCCAGTGAGTGATGTCAAAGTTCCAATCTATAATAGCTTTGATCTATGCAATTATGACCGGTACGGAATGGGATTTGATCATGTAAGTCGTACCTACAAGATTGTTCATATTTCCAGAAATGCGCCAAGAAGAAACACTATGACCGAATATGCAAGTTCAAGCAACATAGCGGCCCGAGTTTATTCAATGGGAACAAGATCATGGCGAGCGATACAATCAATTCCTCTGTGTCATTTCAGCAACAAGAGTGCATATGCGTATGGTGATATGCATTGGTTGGTTAAAGGTGGTGAAAGCCTTAATAATCATATTGTTTCCTTTGATTTCAGAAAAGATGAATTCTATTGGACTCACCATCCCGACTTGCAGGTTTCTTCTTCTCACAAAAATTGGTATTGTTTTCATTTGCTTAATCTCAAAGGATCTTTAGCCATCATGGATATTTGTTCGGATGAGGAAGAGTATATTAAGATATGGATGTTGAAAAATTATGACAAAAAAGAGTGGAAGCTAGATTACATAATAAACACCAAAACGTTTGTAGAACGGCCTTGTAGCACGTATTTGAAATGGGGTGAATGGAAGAATGGCATTTTTACCATACAAAATAGTGTGTGCTACTTTCTGGATCTCAGACATGGTTTCATGAAAGGAGTAAAACTGTCTCCCAGCATCTTTAATTACAATCTTGGCACCCCAAGGGAATACCAACAAAGTATATACAGTTATACAGGAAGCATGATTTCCCTAAAGAATTACGGCAATTTGATTGAAGCAGCAAAACCAGGTATGTGGCTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

345

Amino Acids

40.37

Weight (kDa)

9.11

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 60 - 255 3.4e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1036
Acc36I ACCTGC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 926
AciI CCGC 1 cut(s) 404
AclI AACGTT 1 cut(s) 770
AclWI GGATC 2 cut(s) 664, 870
AcsI RAATTY 3 cut(s) 37, 134, 572
AfaI GTAC 4 cut(s) 56, 225, 296, 325
AfiI CCNNNNNNNGG 1 cut(s) 215
AgeI ACCGGT 1 cut(s) 291
AgsI TTSAA 6 cut(s) 52, 393, 420, 718, 802, 1007
AhdI GACNNNNNGTC 1 cut(s) 176
AjnI CCWGG 1 cut(s) 1018
AluBI AGCT 4 cut(s) 190, 232, 270, 745
AluI AGCT 4 cut(s) 190, 232, 270, 745
Alw26I GTCTC 2 cut(s) 163, 903
AlwI GGATC 2 cut(s) 664, 870
AlwNI CAGNNNCTG 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 2 cut(s) 405, 782
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 3 cut(s) 37, 134, 572
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 4 cut(s) 509, 536, 578, 821
AvaI CYCGRG 1 cut(s) 408
BanI GGYRCC 1 cut(s) 926
BarI GAAGNNNNNNTAC 2 cut(s) 734, 766
BbsI GAAGAC 3 cut(s) 86, 94, 133
BbvI GCAGC 1 cut(s) 1022
BccI CCATC 3 cut(s) 169, 597, 674
BceAI ACGGC 2 cut(s) 797, 1009
BciT130I CCWGG 1 cut(s) 1020
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 163, 903
BfaI CTAG 1 cut(s) 746
BfuAI ACCTGC 1 cut(s) 592
BisI GCNGC 2 cut(s) 405, 1011
BlsI GCNGC 2 cut(s) 406, 1012
BmcAI AGTACT 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 1020
BmeRI GACNNNNNGTC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 928
BmrFI CCNGG 1 cut(s) 1020
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 2 cut(s) 34, 915
BmuI ACTGGG 1 cut(s) 230
BpiI GAAGAC 3 cut(s) 86, 94, 133
BsaAI YACGTR 1 cut(s) 795
BsaJI CCNNGG 1 cut(s) 932
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 1020
BseDI CCNNGG 1 cut(s) 932
BseGI GGATG 4 cut(s) 180, 589, 691, 717
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 880
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 1022
BseYI CCCAGC 1 cut(s) 902
BshFI GGCC 2 cut(s) 407, 784
BshNI GGYRCC 1 cut(s) 926
BshTI ACCGGT 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 163, 903
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 2 cut(s) 407, 784
BsoBI CYCGRG 1 cut(s) 408
Bsp143I GATC 6 cut(s) 94, 274, 310, 431, 656, 862
BspACI CCGC 1 cut(s) 404
BspANI GGCC 2 cut(s) 407, 784
BspCNI CTCAG 1 cut(s) 879
BspHI TCATGA 1 cut(s) 879
BspLI GGNNCC 1 cut(s) 928
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 2 cut(s) 664, 870
BspT107I GGYRCC 1 cut(s) 926
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 932
BssMI GATC 6 cut(s) 94, 274, 310, 431, 656, 862
BssT1I CCWWGG 1 cut(s) 932
Bst2UI CCWGG 1 cut(s) 1020
Bst4CI ACNGT 2 cut(s) 897, 959
Bst6I CTCTTC 1 cut(s) 687
BstAPI GCANNNNNTGC 1 cut(s) 69
BstBAI YACGTR 1 cut(s) 795
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 212, 866
BstF5I GGATG 4 cut(s) 180, 589, 691, 717
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 6 cut(s) 97, 277, 313, 434, 659, 865
BstMAI GTCTC 2 cut(s) 163, 903
BstMBI GATC 6 cut(s) 94, 274, 310, 431, 656, 862
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 1 cut(s) 1020
BstSCI CCNGG 1 cut(s) 1018
BstV1I GCAGC 1 cut(s) 1022
BstV2I GAAGAC 3 cut(s) 86, 94, 133
BstX2I RGATCY 2 cut(s) 656, 862
BstXI CCANNNNNNTGG 1 cut(s) 1026
BstYI RGATCY 2 cut(s) 656, 862
BsuRI GGCC 2 cut(s) 407, 784
BtsCI GGATG 4 cut(s) 180, 589, 691, 717
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 20, 243
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 1 cut(s) 441
CaiI CAGNNNCTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 879
CfoI GCGC 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 406
CsiI ACCWGGT 1 cut(s) 1018
Csp6I GTAC 4 cut(s) 55, 224, 295, 324
CspAI ACCGGT 1 cut(s) 291
CviAII CATG 6 cut(s) 314, 435, 670, 872, 880, 973
CviJI RGCY 9 cut(s) 190, 232, 270, 407, 531, 665, 745, 784, 1030
CviKI_1 RGCY 9 cut(s) 190, 232, 270, 407, 531, 665, 745, 784, 1030
CviQI GTAC 4 cut(s) 55, 224, 295, 324
DdeI CTNAG 2 cut(s) 212, 866
DpnI GATC 6 cut(s) 96, 276, 312, 433, 658, 864
DpnII GATC 6 cut(s) 94, 274, 310, 431, 656, 862
DriI GACNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 687
Eam1105I GACNNNNNGTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 932
Eco88I CYCGRG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 1018
EcoT14I CCWWGG 1 cut(s) 932
EcoT22I ATGCAT 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 932
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 6 cut(s) 317, 438, 673, 875, 883, 976
FatI CATG 6 cut(s) 313, 434, 669, 871, 879, 972
FauNDI CATATG 1 cut(s) 487
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 405, 1011
FokI GGATG 4 cut(s) 187, 576, 698, 724
Fsp4HI GCNGC 2 cut(s) 405, 1011
FspBI CTAG 1 cut(s) 746
GlaI GCGC 1 cut(s) 357
GluI GCNGC 2 cut(s) 405, 1011
GsaI CCCAGC 1 cut(s) 906
HaeIII GGCC 2 cut(s) 407, 784
HapII CCGG 1 cut(s) 292
HhaI GCGC 1 cut(s) 358
Hin1II CATG 6 cut(s) 317, 438, 673, 875, 883, 976
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 1 cut(s) 583
HpaII CCGG 1 cut(s) 292
HphI GGTGA 4 cut(s) 509, 536, 578, 821
Hpy188I TCNGA 4 cut(s) 182, 563, 685, 869
Hpy188III TCNNGA 4 cut(s) 348, 593, 860, 880
HpyCH4III ACNGT 2 cut(s) 897, 959
HpyCH4IV ACGT 2 cut(s) 770, 794
HpyCH4V TGCA 9 cut(s) 11, 25, 32, 43, 282, 386, 485, 505, 601
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 2 cut(s) 212, 866
HpySE526I ACGT 2 cut(s) 770, 794
Hsp92II CATG 6 cut(s) 317, 438, 673, 875, 883, 976
HspAI GCGC 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 6 cut(s) 94, 274, 310, 431, 656, 862
LmnI GCTCC 2 cut(s) 77, 237
LpnPI CCDG 9 cut(s) 249, 305, 361, 587, 845, 916, 951, 1005, 1032
Lsp1109I GCAGC 1 cut(s) 1022
LweI GCATC 2 cut(s) 34, 915
MabI ACCWGGT 1 cut(s) 1018
MaeI CTAG 1 cut(s) 746
MaeII ACGT 2 cut(s) 770, 794
MaeIII GTNAC 1 cut(s) 65
MalI GATC 6 cut(s) 96, 276, 312, 433, 658, 864
MboI GATC 6 cut(s) 94, 274, 310, 431, 656, 862
MboII GAAGA 8 cut(s) 91, 94, 133, 375, 600, 603, 704, 829
MflI RGATCY 2 cut(s) 656, 862
MlyI GAGTC 1 cut(s) 577
MnlI CCTC 4 cut(s) 28, 219, 468, 682
Mph1103I ATGCAT 1 cut(s) 507
MseI TTAA 5 cut(s) 516, 534, 645, 702, 912
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 1020
MvaI CCWGG 1 cut(s) 1020
MwoI GCNNNNNNNGC 1 cut(s) 69
NdeI CATATG 1 cut(s) 487
NdeII GATC 6 cut(s) 94, 274, 310, 431, 656, 862
NlaIII CATG 6 cut(s) 317, 438, 673, 875, 883, 976
NlaIV GGNNCC 1 cut(s) 928
NsiI ATGCAT 1 cut(s) 507
PagI TCATGA 1 cut(s) 879
PinAI ACCGGT 1 cut(s) 291
PkrI GCNGC 2 cut(s) 406, 1012
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 795
PsiI TTATAA 1 cut(s) 1036
Psp1406I AACGTT 1 cut(s) 770
Psp6I CCWGG 1 cut(s) 1018
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 1 cut(s) 1018
PspN4I GGNNCC 1 cut(s) 928
PspPI GGNCC 1 cut(s) 406
PstNI CAGNNNCTG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 656, 862
RsaI GTAC 4 cut(s) 56, 225, 296, 325
RsaNI GTAC 4 cut(s) 55, 224, 295, 324
SaqAI TTAA 5 cut(s) 516, 534, 645, 702, 912
SatI GCNGC 2 cut(s) 405, 1011
Sau3AI GATC 6 cut(s) 94, 274, 310, 431, 656, 862
Sau96I GGNCC 1 cut(s) 406
ScaI AGTACT 1 cut(s) 225
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 1 cut(s) 1020
SexAI ACCWGGT 1 cut(s) 1018
SfaNI GCATC 2 cut(s) 34, 915
SsiI CCGC 1 cut(s) 404
SspMI CTAG 1 cut(s) 746
StyD4I CCNGG 1 cut(s) 1018
StyI CCWWGG 1 cut(s) 932
TaaI ACNGT 2 cut(s) 897, 959
TaiI ACGT 2 cut(s) 773, 797
TaqII GACCGA 1 cut(s) 392
TatI WGTACW 2 cut(s) 54, 223
TauI GCSGC 1 cut(s) 407
Tru1I TTAA 5 cut(s) 516, 534, 645, 702, 912
Tru9I TTAA 5 cut(s) 516, 534, 645, 702, 912
TscAI CASTG 2 cut(s) 27, 243
TseI GCWGC 1 cut(s) 1010
TspDTI ATGAA 5 cut(s) 329, 585, 626, 868, 896
TspGWI ACGGA 2 cut(s) 187, 312
TspRI CASTG 2 cut(s) 27, 243
XapI RAATTY 3 cut(s) 37, 134, 572
XspI CTAG 1 cut(s) 746
ZrmI AGTACT 1 cut(s) 225
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.