Rw6G005370

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000125
Physical Location & Seq
Reverse (-)
8596061 .. 8598832
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005370.1

Sequence Viewer

Length: 1050 bp
ATGAGTGTCCAAGCAGACCCAGCAGGAATCAAAACAGTAACGAAGACCTCCCACCCACTTCAATACCACGGTGGCAACGCCTTGAATATGAAAGCACATGGAAATGGCTCAGAGATCATAGTAAGCCAGAAATGTACCTACGAGGTAGGTTGTGTTTTCGGCAACTTGATTTGCTTTAAAGATATCAGTTATGGAGGTCCGAGCTTCTTGTTGAATCCTCTAATGGGAGAAGTTCTACGGCTTCCGGCTAGTAAGGTGCCAATCCCAGCCTCTATTAGATGTCGCCGTGAGCTTTTTGACTGGCTTGCTATGGGATTTGATGACACAACCGGCACGCACAAGATTCTTCGTGTTTGCGGTAATTCACAGTACAAGAATTACCTGGTGGCCCAAGTACTTGTATTGGGTACTGATTCATGGCGAGAGATACGTGCAGTTCCTCCTTGTAATTTGAGCTACAAAAATGCGTCTGCATGTGGAGACATGCATTGGGTGATTGACAAACAATCGAGAACTAGAGGAAGGGGAGAAAGTAATATAGTTTCCTTCGACTTCAAGAAAGAGGAGTTTTATTGGACTTCTCATCCCAAATTAAGAAGTCAGTTTTCCGACTTGAATTTGGTTAATCTGAAAGGATGCTTAGCGATTGTGGATGCTTGGTTACATACCCATGGCTTGTCCATCGAGATATGGGTGTTGAAAAATTATGAAGTGAAAGAGTGGGTGCGAGAGTACCGCACAGAAATCAATTTTTTGTTTCCTTGTTTTACGGGTAGTTTTGGTGAATGGGAACATGGTATATTTTTCAAAGATGTAATTAGCTGGGGGTTTCAGAACAGAGCTAGTGCAATGTTTTTGGATCTAAGAGGTAGTAGTGTTCAAGTGGAACTGGTGAAGTGTCCTATAACATTAATGCAGAACTGGACTATCATCAGTTATACTGGGAGCCTAATTTCCCTAAAACATTACGGCAATTTGGTTGAAGAGGAAGCATGTGATGAGTACCGGAAGCAGCTTGGTTTCTCTGAAAAATTATGGCTAATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

349

Amino Acids

39.69

Weight (kDa)

7.55

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 49 - 244 2.4e-22 F-box associated beta propeller domain
FBA_1 PF07734 92 - 256 1.9e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AciI CCGC 2 cut(s) 357, 736
AclWI GGATC 1 cut(s) 867
AcsI RAATTY 1 cut(s) 616
AfaI GTAC 6 cut(s) 136, 371, 396, 409, 734, 1004
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 9 cut(s) 62, 85, 214, 556, 616, 700, 808, 881, 983
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 6 cut(s) 204, 292, 456, 822, 842, 1015
AluI AGCT 6 cut(s) 204, 292, 456, 822, 842, 1015
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 1 cut(s) 867
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 1012
ApoI RAATTY 1 cut(s) 616
AseI ATTAAT 1 cut(s) 911
AspS9I GGNCC 2 cut(s) 197, 388
AsuHPI GGTGA 3 cut(s) 505, 794, 904
AvaII GGWCC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 1024
BccI CCATC 1 cut(s) 689
BceAI ACGGC 3 cut(s) 254, 270, 985
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 3 cut(s) 249, 516, 843
BisI GCNGC 1 cut(s) 1013
BlpI GCTNAGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 1014
BmcAI AGTACT 1 cut(s) 396
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 197, 388
BmiI GGNNCC 2 cut(s) 258, 947
BmrFI CCNGG 1 cut(s) 383
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 2 cut(s) 626, 643
BmuI ACTGGG 1 cut(s) 951
BpiI GAAGAC 1 cut(s) 50
Bpu1102I GCTNAGC 1 cut(s) 640
BsaAI YACGTR 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 67, 670
BsaWI WCCGGW 1 cut(s) 1005
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 4 cut(s) 305, 894, 926, 946
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 67, 670
BseGI GGATG 3 cut(s) 583, 641, 658
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 4 cut(s) 305, 894, 926, 946
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 1 cut(s) 1024
BseYI CCCAGC 3 cut(s) 19, 265, 822
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 1 cut(s) 389
BshNI GGYRCC 1 cut(s) 256
BsiSI CCGG 3 cut(s) 245, 330, 1006
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 474
BsnI GGCC 1 cut(s) 389
Bsp143I GATC 2 cut(s) 114, 859
Bsp1720I GCTNAGC 1 cut(s) 640
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 2 cut(s) 357, 736
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 258, 947
BspPI GGATC 1 cut(s) 867
BspT107I GGYRCC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 4 cut(s) 305, 894, 926, 946
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 67, 670
BssMI GATC 2 cut(s) 114, 859
BssT1I CCWWGG 1 cut(s) 670
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 3 cut(s) 37, 71, 369
Bst6I CTCTTC 1 cut(s) 978
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 306, 335
BstDEI CTNAG 3 cut(s) 109, 640, 863
BstDSI CCRYGG 2 cut(s) 67, 670
BstF5I GGATG 3 cut(s) 583, 641, 658
BstKTI GATC 2 cut(s) 117, 862
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 2 cut(s) 114, 859
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 3 cut(s) 477, 487, 996
BstSCI CCNGG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 1024
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 859
BstYI RGATCY 1 cut(s) 859
BsuRI GGCC 1 cut(s) 389
BtgI CCRYGG 2 cut(s) 67, 670
BtsCI GGATG 3 cut(s) 583, 641, 658
Cac8I GCNNGC 2 cut(s) 306, 335
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 197, 388
CseI GACGC 1 cut(s) 456
CsiI ACCWGGT 1 cut(s) 381
Csp6I GTAC 6 cut(s) 135, 370, 395, 408, 733, 1003
CviAII CATG 7 cut(s) 98, 417, 474, 484, 671, 794, 993
CviQI GTAC 6 cut(s) 135, 370, 395, 408, 733, 1003
DdeI CTNAG 3 cut(s) 109, 640, 863
DpnI GATC 2 cut(s) 116, 861
DpnII GATC 2 cut(s) 114, 859
DraI TTTAAA 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
Eco130I CCWWGG 1 cut(s) 670
Eco32I GATATC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 381
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 670
EcoT22I ATGCAT 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 670
FaeI CATG 7 cut(s) 101, 420, 477, 487, 674, 797, 996
FatI CATG 7 cut(s) 97, 416, 473, 483, 670, 793, 992
Fnu4HI GCNGC 1 cut(s) 1013
FokI GGATG 3 cut(s) 570, 648, 665
Fsp4HI GCNGC 1 cut(s) 1013
FspBI CTAG 3 cut(s) 249, 516, 843
GluI GCNGC 1 cut(s) 1013
GsaI CCCAGC 3 cut(s) 23, 269, 826
HaeIII GGCC 1 cut(s) 389
HapII CCGG 3 cut(s) 245, 330, 1006
HgaI GACGC 1 cut(s) 456
Hin1II CATG 7 cut(s) 101, 420, 477, 487, 674, 797, 996
HinfI GANTC 4 cut(s) 27, 214, 343, 413
HpaII CCGG 3 cut(s) 245, 330, 1006
HphI GGTGA 3 cut(s) 505, 794, 904
Hpy188I TCNGA 6 cut(s) 112, 201, 610, 630, 834, 1027
Hpy188III TCNNGA 3 cut(s) 510, 556, 685
HpyAV CCTTC 2 cut(s) 516, 556
HpyCH4III ACNGT 3 cut(s) 37, 71, 369
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 5 cut(s) 434, 473, 487, 848, 916
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 3 cut(s) 109, 640, 863
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 7 cut(s) 101, 420, 477, 487, 674, 797, 996
Kzo9I GATC 2 cut(s) 114, 859
LmnI GCTCC 1 cut(s) 945
Lsp1109I GCAGC 1 cut(s) 1024
LweI GCATC 2 cut(s) 626, 643
MabI ACCWGGT 1 cut(s) 381
MaeI CTAG 3 cut(s) 249, 516, 843
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 2 cut(s) 37, 660
MalI GATC 2 cut(s) 116, 861
MboI GATC 2 cut(s) 114, 859
MboII GAAGA 3 cut(s) 55, 338, 995
MflI RGATCY 1 cut(s) 859
MmeI TCCRAC 1 cut(s) 633
Mph1103I ATGCAT 1 cut(s) 489
MseI TTAA 4 cut(s) 177, 593, 624, 911
MslI CAYNNNNRTG 2 cut(s) 102, 669
MspI CCGG 3 cut(s) 245, 330, 1006
MspR9I CCNGG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 1 cut(s) 20
NcoI CCATGG 1 cut(s) 670
NdeII GATC 2 cut(s) 114, 859
NlaIII CATG 7 cut(s) 101, 420, 477, 487, 674, 797, 996
NlaIV GGNNCC 2 cut(s) 258, 947
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 3 cut(s) 477, 487, 996
PfeI GAWTC 4 cut(s) 27, 214, 343, 413
PkrI GCNGC 1 cut(s) 1014
Ppu21I YACGTR 1 cut(s) 431
PshBI ATTAAT 1 cut(s) 911
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 3 cut(s) 19, 265, 822
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 258, 947
PspPI GGNCC 2 cut(s) 197, 388
PsuI RGATCY 1 cut(s) 859
RsaI GTAC 6 cut(s) 136, 371, 396, 409, 734, 1004
RsaNI GTAC 6 cut(s) 135, 370, 395, 408, 733, 1003
RseI CAYNNNNRTG 2 cut(s) 102, 669
SaqAI TTAA 4 cut(s) 177, 593, 624, 911
SatI GCNGC 1 cut(s) 1013
Sau3AI GATC 2 cut(s) 114, 859
Sau96I GGNCC 2 cut(s) 197, 388
ScaI AGTACT 1 cut(s) 396
ScrFI CCNGG 1 cut(s) 383
SexAI ACCWGGT 1 cut(s) 381
SfaNI GCATC 2 cut(s) 626, 643
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 102, 669
SsiI CCGC 2 cut(s) 357, 736
SspMI CTAG 3 cut(s) 249, 516, 843
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 3 cut(s) 37, 71, 369
TaiI ACGT 1 cut(s) 433
TaqI TCGA 3 cut(s) 509, 549, 684
TatI WGTACW 2 cut(s) 369, 394
TfiI GAWTC 4 cut(s) 27, 214, 343, 413
Tru1I TTAA 4 cut(s) 177, 593, 624, 911
Tru9I TTAA 4 cut(s) 177, 593, 624, 911
TseI GCWGC 1 cut(s) 1012
TspDTI ATGAA 3 cut(s) 104, 405, 723
VpaK11BI GGWCC 1 cut(s) 197
VspI ATTAAT 1 cut(s) 911
XapI RAATTY 1 cut(s) 616
XceI RCATGY 3 cut(s) 477, 487, 996
XspI CTAG 3 cut(s) 249, 516, 843
ZrmI AGTACT 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.