Prupe.2G095700_v2.0.a1

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000125
Physical Location & Seq
Reverse (-)
15084923 .. 15085642
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G095700.1

Sequence Viewer

Length: 720 bp
ATGGGTGCCCTACCACTGGATACTCTTATCGACATCCTTTCAAGAATGCCCGTAAATTCGATTTGTTGCATGAGATGTGTATCCAAGGCCTTGTTAAATATGGTTGACGATCCCTCTCTTGCCACAATGCACATGCGGCGCCATTTTCTAACTACTTGTTCTACTACTACCATTGAAGTTCCTCGACTTGTTGTTCTTGATGAGTCTCCCTATCATAAACAAAACGTGTTGTATCCATTGAAGTACAATGGTAACGACTTATTGACCAAGAGCAAACTTGTAATTGTTTCATATTTCGGATCTAGACAACGTTTTTATTCACATGCTTTTGTTTTCTGCAACTTGTTTGGCTTTACTGGTCTTAATACGAAGCATGACCTTAATCCAAAGCATGGAAGGTCATGCTTGTTGGTGAATCCTTTCAAGGGAGAAGTTCTAATGCTCCCATTCGCAAGTGACGTCCCAGTTCCAACCAATAGTCTCTGCAATTTTGATTGTTATGGCTTGGGATTTGATAATATAACCAACAGCTTCAAGATTGTTCGCGTTTCCACCAATAAAAAAGACTACATGCTGGCCGAAGTTCTTGTATTGGGGACAAGCTCATGGCGGGCATTACCCACAGTACTTTCCTACAAGCAAGTCGGCATATGCACATGGAGACATGCATTGGTTGGTTTATGGAGTTTGTATGTTGTTTGTACGTATACTTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

240

Amino Acids

27.03

Weight (kDa)

9.0

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
AccB1I GGYRCC 2 cut(s) 5, 138
AccB7I CCANNNNNTGG 1 cut(s) 392
AccI GTMKAC 1 cut(s) 707
AccII CGCG 1 cut(s) 546
AciI CCGC 2 cut(s) 136, 610
AclI AACGTT 1 cut(s) 310
AclWI GGATC 2 cut(s) 104, 307
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 1 cut(s) 55
AcyI GRCGYC 2 cut(s) 139, 459
AfaI GTAC 3 cut(s) 245, 627, 703
AfiI CCNNNNNNNGG 3 cut(s) 16, 392, 425
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 5 cut(s) 42, 176, 241, 424, 535
AluBI AGCT 2 cut(s) 531, 603
AluI AGCT 2 cut(s) 531, 603
Alw26I GTCTC 3 cut(s) 210, 485, 655
AlwI GGATC 2 cut(s) 104, 307
AoxI GGCC 2 cut(s) 87, 576
ApoI RAATTY 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 419
AspLEI GCGC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 10
BanI GGYRCC 2 cut(s) 5, 138
BciVI GTATCC 3 cut(s) 13, 91, 243
BcoDI GTCTC 3 cut(s) 210, 485, 655
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 142
BfuI GTATCC 3 cut(s) 13, 91, 243
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmcAI AGTACT 1 cut(s) 627
BmiI GGNNCC 2 cut(s) 7, 140
BmrI ACTGGG 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 458
BsaAI YACGTR 1 cut(s) 705
BsaBI GATNNNNATC 1 cut(s) 79
BsaHI GRCGYC 2 cut(s) 139, 459
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 392, 425
Bse1I ACTGG 3 cut(s) 21, 361, 464
Bse8I GATNNNNATC 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 3 cut(s) 16, 392, 425
BseNI ACTGG 3 cut(s) 21, 361, 464
BseSI GKGCMC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 2 cut(s) 89, 578
BshNI GGYRCC 2 cut(s) 5, 138
BslFI GGGAC 2 cut(s) 446, 610
BslI CCNNNNNNNGG 3 cut(s) 16, 392, 425
BsmAI GTCTC 3 cut(s) 210, 485, 655
BsmFI GGGAC 2 cut(s) 446, 610
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 2 cut(s) 89, 578
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 109, 299
BspACI CCGC 2 cut(s) 136, 610
BspANI GGCC 2 cut(s) 89, 578
BspFNI CGCG 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 7, 140
BspPI GGATC 2 cut(s) 104, 307
BspT107I GGYRCC 2 cut(s) 5, 138
BsrI ACTGG 3 cut(s) 21, 361, 464
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 2 cut(s) 109, 299
BssNAI GTATAC 1 cut(s) 708
BssNI GRCGYC 2 cut(s) 139, 459
BssT1I CCWWGG 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 708
Bst4CI ACNGT 1 cut(s) 625
BstACI GRCGYC 2 cut(s) 139, 459
BstBAI YACGTR 1 cut(s) 705
BstC8I GCNNGC 2 cut(s) 576, 612
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 546
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 2 cut(s) 112, 302
BstMAI GTCTC 3 cut(s) 210, 485, 655
BstMBI GATC 2 cut(s) 109, 299
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNSI RCATGY 4 cut(s) 136, 326, 574, 668
BstSLI GKGCMC 1 cut(s) 10
BstSNI TACGTA 1 cut(s) 705
BstUI CGCG 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BstZ17I GTATAC 1 cut(s) 708
BsuI GTATCC 3 cut(s) 13, 91, 243
BsuRI GGCC 2 cut(s) 89, 578
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 576, 612
CfoI GCGC 1 cut(s) 141
Csp6I GTAC 3 cut(s) 244, 626, 702
CviJI RGCY 6 cut(s) 89, 351, 504, 531, 578, 603
CviKI_1 RGCY 6 cut(s) 89, 351, 504, 531, 578, 603
CviQI GTAC 3 cut(s) 244, 626, 702
DinI GGCGCC 1 cut(s) 140
DpnI GATC 2 cut(s) 111, 301
DpnII GATC 2 cut(s) 109, 299
EaeI YGGCCR 1 cut(s) 576
Eco105I TACGTA 1 cut(s) 705
Eco130I CCWWGG 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 670
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 84
FaqI GGGAC 2 cut(s) 446, 610
FauI CCCGC 1 cut(s) 603
FauNDI CATATG 1 cut(s) 650
FblI GTMKAC 1 cut(s) 707
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 2 cut(s) 89, 578
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 139, 459
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 203, 415
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 106, 708
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 4 cut(s) 42, 197, 303, 535
Hpy8I GTNNAC 2 cut(s) 106, 708
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4IV ACGT 4 cut(s) 225, 310, 459, 704
HpyCH4V TGCA 6 cut(s) 69, 130, 339, 486, 654, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpySE526I ACGT 4 cut(s) 225, 310, 459, 704
Hsp92I GRCGYC 2 cut(s) 139, 459
HspAI GCGC 1 cut(s) 139
KasI GGCGCC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 109, 299
LmnI GCTCC 1 cut(s) 447
LpnPI CCDG 4 cut(s) 2, 342, 477, 560
MaeI CTAG 1 cut(s) 303
MaeII ACGT 4 cut(s) 225, 310, 459, 704
MaeIII GTNAC 2 cut(s) 251, 455
MalI GATC 2 cut(s) 111, 301
MboI GATC 2 cut(s) 109, 299
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 3 cut(s) 55, 282, 487
Mly113I GGCGCC 1 cut(s) 139
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 494
MnlI CCTC 2 cut(s) 124, 192
Mph1103I ATGCAT 1 cut(s) 670
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 3 cut(s) 95, 363, 381
Mva1269I GAATGC 1 cut(s) 51
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 136
NarI GGCGCC 1 cut(s) 139
NdeI CATATG 1 cut(s) 650
NdeII GATC 2 cut(s) 109, 299
NlaIV GGNNCC 2 cut(s) 7, 140
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 4 cut(s) 136, 326, 574, 668
PceI AGGCCT 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PctI GAATGC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 415
PflMI CCANNNNNTGG 1 cut(s) 392
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 1 cut(s) 211
PluTI GGCGCC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 705
Psp1406I AACGTT 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 7, 140
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 3 cut(s) 245, 627, 703
RsaNI GTAC 3 cut(s) 244, 626, 702
SaqAI TTAA 3 cut(s) 95, 363, 381
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 2 cut(s) 109, 299
ScaI AGTACT 1 cut(s) 627
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 10
SetI ASST 8 cut(s) 228, 313, 381, 401, 462, 533, 605, 707
SfoI GGCGCC 1 cut(s) 140
SnaBI TACGTA 1 cut(s) 705
Sse9I AATT 3 cut(s) 55, 282, 487
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 136, 610
SspDI GGCGCC 1 cut(s) 138
SspMI CTAG 1 cut(s) 303
StuI AGGCCT 1 cut(s) 89
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 625
TaiI ACGT 4 cut(s) 228, 313, 462, 707
TaqI TCGA 3 cut(s) 30, 59, 184
TasI AATT 3 cut(s) 55, 282, 487
TatI WGTACW 2 cut(s) 243, 625
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 3 cut(s) 95, 363, 381
Tru9I TTAA 3 cut(s) 95, 363, 381
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 392
XapI RAATTY 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 302
XceI RCATGY 4 cut(s) 136, 326, 574, 668
XmiI GTMKAC 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 1 cut(s) 303
ZraI GACGTC 1 cut(s) 460
ZrmI AGTACT 1 cut(s) 627
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.