pycom01g13020

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
13599085 .. 13600397
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13020.4

Sequence Viewer

Length: 777 bp
ATGTTGAGGAGAACCCAGAAGAGGCACAGCTTATGCAACAACATGAACAACAACACAGAGTTGATGGACCTTCCCATTGAAATCCTTATCAACATCCTTCTGAGACTGCCTGTAAATTCGCTTCATCGCATCCAATGTGTATCTAAGGCCTTCTTAAACAAGGTTGACGACCTCTCTTTTGTTAAACTGCACATGCATCGTTTACTTGGTAGTAGTAGTGATTGTGCCAGTGATGTTCCTCATCAAGGCCTCGATTTATGCTTCTCATCGAATCCTCAAAAGGAAAAGCAAATATTAATGCTCAACTATTGGGGTAGAAAGCGATCTACCAACTTGGACTTCAAGAAAGAGGAGTTTTATTGGACTCCTCACCCGACCTTAGAAAAAAAGTCGGGTATCTCCCTCGCGCTTCTTCACTTGCTTCATTTAAGAGGATCTTTAGTTAATGACAAGAAAGAGTGGGCTCTCAACTACAAAATAGATATGAAACATCCTTTTCGGAATCCTCATGTGTCGGCATGTGGTGAATGGGGAGCACGAAGTTTACTTCTTTTGGATCTAACATGTATTTCCATGAATCGTGCAAAACTCGAAGGTAGTAAATATTATAAGAGGATCTTTGGTTGTACCGATAGCTTGATTTCTCTAAACAATTGTGGAGATTTGGTTGAAGCAAAACAAGTTACTGAAATCTCTACGTCTATTGAGAATCTGGCTGAAGCTGGAAAAGCACGCGGGAGAAATTTGGTTTACTTTAGATCAAGAGGAGCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

259

Amino Acids

29.52

Weight (kDa)

9.4

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AccII CGCG 2 cut(s) 407, 735
AciI CCGC 1 cut(s) 735
AclWI GGATC 3 cut(s) 442, 564, 623
AcsI RAATTY 2 cut(s) 115, 742
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 1 cut(s) 628
AfiI CCNNNNNNNGG 2 cut(s) 21, 245
AflIII ACRYGT 1 cut(s) 563
AgsI TTSAA 3 cut(s) 80, 343, 671
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 4 cut(s) 30, 636, 722, 770
AluI AGCT 4 cut(s) 30, 636, 722, 770
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 3 cut(s) 442, 564, 623
AoxI GGCC 2 cut(s) 147, 247
ApoI RAATTY 2 cut(s) 115, 742
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AseI ATTAAT 1 cut(s) 296
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 362, 536
AvaII GGWCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 466
BarI GAAGNNNNNNTAC 2 cut(s) 105, 137
Bbv12I GWGCWC 1 cut(s) 538
BccI CCATC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BcoDI GTCTC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmsI GCATC 2 cut(s) 138, 205
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 245
Bse1I ACTGG 1 cut(s) 228
BseGI GGATG 3 cut(s) 93, 129, 490
BseLI CCNNNNNNNGG 2 cut(s) 21, 245
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 3 cut(s) 22, 357, 365
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 407, 735
BshFI GGCC 2 cut(s) 149, 249
BsiHKAI GWGCWC 1 cut(s) 538
BslI CCNNNNNNNGG 2 cut(s) 21, 245
BsmAI GTCTC 1 cut(s) 97
BsnI GGCC 2 cut(s) 149, 249
Bsp1286I GDGCHC 2 cut(s) 466, 538
Bsp143I GATC 5 cut(s) 323, 434, 556, 615, 758
BspACI CCGC 1 cut(s) 735
BspANI GGCC 2 cut(s) 149, 249
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 2 cut(s) 407, 735
BspPI GGATC 3 cut(s) 442, 564, 623
BsrI ACTGG 1 cut(s) 228
BssMI GATC 5 cut(s) 323, 434, 556, 615, 758
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 733
BstDEI CTNAG 3 cut(s) 101, 144, 379
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 3 cut(s) 93, 129, 490
BstFNI CGCG 2 cut(s) 407, 735
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 5 cut(s) 326, 437, 559, 618, 761
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 5 cut(s) 323, 434, 556, 615, 758
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstNSI RCATGY 3 cut(s) 196, 522, 567
BstUI CGCG 2 cut(s) 407, 735
BstX2I RGATCY 3 cut(s) 434, 556, 615
BstYI RGATCY 3 cut(s) 434, 556, 615
BsuRI GGCC 2 cut(s) 149, 249
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 3 cut(s) 93, 129, 490
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 733
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 627
CviAII CATG 6 cut(s) 43, 193, 509, 519, 564, 574
CviJI RGCY 8 cut(s) 30, 149, 249, 464, 636, 716, 722, 770
CviKI_1 RGCY 8 cut(s) 30, 149, 249, 464, 636, 716, 722, 770
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 3 cut(s) 101, 144, 379
DpnI GATC 5 cut(s) 325, 436, 558, 617, 760
DpnII GATC 5 cut(s) 323, 434, 556, 615, 758
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco147I AGGCCT 2 cut(s) 149, 249
Eco24I GRGCYC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 738
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 466
FaeI CATG 6 cut(s) 46, 196, 512, 522, 567, 577
FalI AAGNNNNNCTT 7 cut(s) 137, 169, 421, 453, 602, 634, 754
FatI CATG 6 cut(s) 42, 192, 508, 518, 563, 573
FauI CCCGC 1 cut(s) 728
FokI GGATG 3 cut(s) 80, 116, 477
FriOI GRGCYC 1 cut(s) 466
GlaI GCGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 149, 249
HhaI GCGC 1 cut(s) 409
Hin1II CATG 6 cut(s) 46, 196, 512, 522, 567, 577
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 5 cut(s) 271, 364, 502, 577, 709
HphI GGTGA 2 cut(s) 362, 536
Hpy166II GTNNAC 4 cut(s) 166, 203, 545, 751
Hpy188I TCNGA 2 cut(s) 102, 501
Hpy188III TCNNGA 2 cut(s) 343, 762
Hpy8I GTNNAC 4 cut(s) 166, 203, 545, 751
HpyAV CCTTC 4 cut(s) 80, 107, 160, 587
HpyCH4IV ACGT 1 cut(s) 698
HpyCH4V TGCA 4 cut(s) 36, 190, 196, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 3 cut(s) 101, 144, 379
HpySE526I ACGT 1 cut(s) 698
Hsp92II CATG 6 cut(s) 46, 196, 512, 522, 567, 577
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 5 cut(s) 323, 434, 556, 615, 758
LmnI GCTCC 2 cut(s) 533, 767
LpnPI CCDG 5 cut(s) 29, 123, 241, 698, 708
LweI GCATC 2 cut(s) 138, 205
MaeII ACGT 1 cut(s) 698
MaeIII GTNAC 1 cut(s) 682
MalI GATC 5 cut(s) 325, 436, 558, 617, 760
MboI GATC 5 cut(s) 323, 434, 556, 615, 758
MboII GAAGA 2 cut(s) 31, 404
MfeI CAATTG 1 cut(s) 652
MflI RGATCY 3 cut(s) 434, 556, 615
MhlI GDGCHC 2 cut(s) 466, 538
MluCI AATT 3 cut(s) 115, 652, 742
MlyI GAGTC 1 cut(s) 358
Mph1103I ATGCAT 1 cut(s) 198
MseI TTAA 5 cut(s) 155, 183, 296, 428, 444
MunI CAATTG 1 cut(s) 652
MvnI CGCG 2 cut(s) 407, 735
MwoI GCNNNNNNNGC 1 cut(s) 728
NdeII GATC 5 cut(s) 323, 434, 556, 615, 758
NlaIII CATG 6 cut(s) 46, 196, 512, 522, 567, 577
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 3 cut(s) 196, 522, 567
PceI AGGCCT 2 cut(s) 149, 249
PciI ACATGT 1 cut(s) 563
PfeI GAWTC 4 cut(s) 271, 502, 577, 709
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PscI ACATGT 1 cut(s) 563
PshBI ATTAAT 1 cut(s) 296
PsiI TTATAA 1 cut(s) 609
PspPI GGNCC 1 cut(s) 67
PsuI RGATCY 3 cut(s) 434, 556, 615
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
SaqAI TTAA 5 cut(s) 155, 183, 296, 428, 444
Sau3AI GATC 5 cut(s) 323, 434, 556, 615, 758
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 358
SduI GDGCHC 2 cut(s) 466, 538
SfaNI GCATC 2 cut(s) 138, 205
SinI GGWCC 1 cut(s) 67
Sse9I AATT 3 cut(s) 115, 652, 742
SseBI AGGCCT 2 cut(s) 149, 249
SsiI CCGC 1 cut(s) 735
SspI AATATT 2 cut(s) 294, 605
StuI AGGCCT 2 cut(s) 149, 249
TaiI ACGT 1 cut(s) 701
TaqI TCGA 3 cut(s) 252, 269, 591
TasI AATT 3 cut(s) 115, 652, 742
TfiI GAWTC 4 cut(s) 271, 502, 577, 709
Tru1I TTAA 5 cut(s) 155, 183, 296, 428, 444
Tru9I TTAA 5 cut(s) 155, 183, 296, 428, 444
TscAI CASTG 1 cut(s) 235
TspDTI ATGAA 5 cut(s) 59, 113, 413, 500, 590
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 67
VspI ATTAAT 1 cut(s) 296
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 2 cut(s) 115, 742
XceI RCATGY 3 cut(s) 196, 522, 567
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.