RLG00000026900

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000125
Physical Location & Seq
Forward (+)
6861663 .. 6862614
952 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026900

Sequence Viewer

Length: 882 bp
ATGGCCTGGACCGAGAGAATGAGAAAGTATTGCTTCCGAAAGACGAAGAAGAAGACAGAGTTGATTTATCTACCCAGAGATATCATCATCGAAATCCTTACGAGACTTCCACTGAAACACTTCGTTCCCTTTGCTGCCGAAGTACCACTTCAACTAATGTCGCTTACCAGATCGGAACTTTTTGGTCGTGTTAAGAATCTTAAGATGGAGGCAATGGAGTACGATGGCGAGGCCTTGACAGCAGAAGAAAACAAGCACGCCTCGCAGGTGTTTGCCTCCTCGAAACCATTCTCAGTGAAATACCATTTCGACTTTTGTTACTACAACTTATTTTTCTTTAGTGAAGAGTCTGGAGAACCTCCATGCTTCTTGTCCAATCCTCTCTGCGGAGAAGTTCTAAAGCTCCCAGCAAATAACTTTCCTTCTCAAGAGAATCGTTTTGATCTCCCGTACGGTATGGGGTTTGATACTATAACCAACACCCACAAGATTGTTTGCATGTCCTCAAATTTCGAAGAAGACTACCTAGGGGCTCAAGTTCTGGTATTGGGCACAAGCTCATGGAAAGAGATACCCTCTTTACCTCCTTGTTATGTAGGTGAACAAAAGATATGTGCACATGGAGATATGCATTGGTTGAGTGATAGTGAAGGATTCTGGCAGATTATTTCTTTCGACTTCACGAAAGAGGAGTTCTATTTGACTCCCCATCCCACCTCAATACCTTCGGATCTTCTTCCTTACATCCACTTACTTACTTGGAGAGGATCTATTGCCATTGCATACGCTTCATTATTGGATATGTCTATTAAGATTTGGGTGTTGAAAAAATATGATACCAAAGAGTGGGCATGCTCACCGGATTACTCCATAAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

294

Amino Acids

33.89

Weight (kDa)

5.66

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 115 - 285 4.5e-24 F-box associated beta propeller domain
FBA_1 PF07734 119 - 282 1.2e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
Acc36I ACCTGC 1 cut(s) 256
AccB7I CCANNNNNTGG 1 cut(s) 846
AciI CCGC 1 cut(s) 387
AclWI GGATC 2 cut(s) 738, 775
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 3 cut(s) 144, 221, 452
AfiI CCNNNNNNNGG 2 cut(s) 386, 846
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 2 cut(s) 152, 826
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 2 cut(s) 403, 558
AluI AGCT 2 cut(s) 403, 558
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 1 cut(s) 97
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 2 cut(s) 738, 775
AoxI GGCC 2 cut(s) 3, 231
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 508
Asp700I GAANNNNTTC 2 cut(s) 119, 287
AspA2I CCTAGG 1 cut(s) 526
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 2 cut(s) 611, 849
AsuII TTCGAA 1 cut(s) 513
AvaII GGWCC 1 cut(s) 9
AvrII CCTAGG 1 cut(s) 526
BaeGI GKGCMC 2 cut(s) 554, 619
BanII GRGCYC 1 cut(s) 535
BbsI GAAGAC 2 cut(s) 59, 525
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 199, 218, 717
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 1 cut(s) 527
BfrI CTTAAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 135
BlnI CCTAGG 1 cut(s) 526
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 7
BpiI GAAGAC 2 cut(s) 59, 525
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BpmI CTGGAG 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 513
BpuEI CTTGAG 2 cut(s) 411, 519
BsaJI CCNNGG 1 cut(s) 526
BsaWI WCCGGW 1 cut(s) 859
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 846
Bse3DI GCAATG 2 cut(s) 219, 777
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 2 cut(s) 709, 744
BseLI CCNNNNNNNGG 2 cut(s) 386, 846
BseMI GCAATG 2 cut(s) 219, 777
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 268, 704
BseSI GKGCMC 2 cut(s) 554, 619
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 406
BshFI GGCC 2 cut(s) 5, 233
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 1 cut(s) 860
BsiWI CGTACG 1 cut(s) 450
BslI CCNNNNNNNGG 2 cut(s) 386, 846
BsmAI GTCTC 1 cut(s) 97
BsnI GGCC 2 cut(s) 5, 233
Bsp119I TTCGAA 1 cut(s) 513
Bsp1286I GDGCHC 3 cut(s) 535, 554, 619
Bsp143I GATC 4 cut(s) 170, 442, 730, 767
BspACI CCGC 1 cut(s) 387
BspANI GGCC 2 cut(s) 5, 233
BspCNI CTCAG 1 cut(s) 305
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 2 cut(s) 738, 775
BspT104I TTCGAA 1 cut(s) 513
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 219, 777
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 4 cut(s) 170, 442, 730, 767
BssT1I CCWWGG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 513
BstC8I GCNNGC 2 cut(s) 258, 853
BstDEI CTNAG 1 cut(s) 292
BstF5I GGATG 2 cut(s) 709, 744
BstKTI GATC 4 cut(s) 173, 445, 733, 770
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 4 cut(s) 170, 442, 730, 767
BstMWI GCNNNNNNNGC 2 cut(s) 239, 262
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 2 cut(s) 502, 855
BstSCI CCNGG 1 cut(s) 5
BstSLI GKGCMC 2 cut(s) 554, 619
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 2 cut(s) 59, 525
BstX2I RGATCY 2 cut(s) 730, 767
BstYI RGATCY 2 cut(s) 730, 767
BsuRI GGCC 2 cut(s) 5, 233
BtsCI GGATG 2 cut(s) 709, 744
BtsIMutI CAGTG 2 cut(s) 110, 300
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 258, 853
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 3 cut(s) 143, 220, 451
CviAII CATG 5 cut(s) 363, 499, 561, 620, 852
CviJI RGCY 5 cut(s) 5, 233, 403, 533, 558
CviKI_1 RGCY 5 cut(s) 5, 233, 403, 533, 558
CviQI GTAC 3 cut(s) 143, 220, 451
DdeI CTNAG 1 cut(s) 292
DpnI GATC 4 cut(s) 172, 444, 732, 769
DpnII GATC 4 cut(s) 170, 442, 730, 767
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 526
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 535
Eco32I GATATC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 526
EcoT22I ATGCAT 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 535
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 5 cut(s) 366, 502, 564, 623, 855
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 132, 164
FatI CATG 5 cut(s) 362, 498, 560, 619, 851
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 2 cut(s) 696, 731
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 527
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 410
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 2 cut(s) 5, 233
HapII CCGG 1 cut(s) 860
Hin1II CATG 5 cut(s) 366, 502, 564, 623, 855
HinfI GANTC 5 cut(s) 196, 347, 433, 654, 703
HpaII CCGG 1 cut(s) 860
HphI GGTGA 2 cut(s) 611, 849
Hpy166II GTNNAC 2 cut(s) 602, 617
Hpy188I TCNGA 4 cut(s) 38, 175, 730, 881
Hpy188III TCNNGA 3 cut(s) 351, 428, 682
Hpy8I GTNNAC 2 cut(s) 602, 617
HpyAV CCTTC 3 cut(s) 432, 644, 735
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4V TGCA 4 cut(s) 498, 617, 631, 782
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 262
HpyF3I CTNAG 1 cut(s) 292
Hsp92II CATG 5 cut(s) 366, 502, 564, 623, 855
Kzo9I GATC 4 cut(s) 170, 442, 730, 767
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 9 cut(s) 19, 88, 181, 251, 336, 420, 527, 643, 873
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 1 cut(s) 527
MaeIII GTNAC 1 cut(s) 317
MalI GATC 4 cut(s) 172, 444, 732, 769
MboI GATC 4 cut(s) 170, 442, 730, 767
MboII GAAGA 9 cut(s) 58, 61, 64, 257, 356, 527, 530, 725, 728
MflI RGATCY 2 cut(s) 730, 767
MhlI GDGCHC 3 cut(s) 535, 554, 619
MluCI AATT 1 cut(s) 508
MlyI GAGTC 2 cut(s) 356, 697
Mph1103I ATGCAT 1 cut(s) 633
MroXI GAANNNNTTC 2 cut(s) 119, 287
MseI TTAA 3 cut(s) 192, 201, 810
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 860
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 239, 262
NdeII GATC 4 cut(s) 170, 442, 730, 767
NlaIII CATG 5 cut(s) 366, 502, 564, 623, 855
NsiI ATGCAT 1 cut(s) 633
NspI RCATGY 2 cut(s) 502, 855
NspV TTCGAA 1 cut(s) 513
PaeI GCATGC 1 cut(s) 855
PaqCI CACCTGC 1 cut(s) 256
PceI AGGCCT 1 cut(s) 233
PdmI GAANNNNTTC 2 cut(s) 119, 287
PfeI GAWTC 3 cut(s) 196, 433, 654
Pfl23II CGTACG 1 cut(s) 450
PflMI CCANNNNNTGG 1 cut(s) 846
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 2 cut(s) 355, 697
PpsI GAGTC 2 cut(s) 355, 697
Psp6I CCWGG 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 1 cut(s) 5
PspLI CGTACG 1 cut(s) 450
PspPI GGNCC 1 cut(s) 9
PsuI RGATCY 2 cut(s) 730, 767
RsaI GTAC 3 cut(s) 144, 221, 452
RsaNI GTAC 3 cut(s) 143, 220, 451
SaqAI TTAA 3 cut(s) 192, 201, 810
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 4 cut(s) 170, 442, 730, 767
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 2 cut(s) 356, 697
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 3 cut(s) 535, 554, 619
SetI ASST 9 cut(s) 270, 361, 405, 528, 560, 586, 601, 719, 727
SfuI TTCGAA 1 cut(s) 513
SinI GGWCC 1 cut(s) 9
SmlI CTYRAG 3 cut(s) 200, 426, 534
SmoI CTYRAG 3 cut(s) 200, 426, 534
SphI GCATGC 1 cut(s) 855
Sse9I AATT 1 cut(s) 508
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 1 cut(s) 387
SspMI CTAG 1 cut(s) 527
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 1 cut(s) 455
TaqI TCGA 5 cut(s) 90, 281, 309, 513, 675
TaqII GACCGA 1 cut(s) 26
TasI AATT 1 cut(s) 508
TfiI GAWTC 3 cut(s) 196, 433, 654
Tru1I TTAA 3 cut(s) 192, 201, 810
Tru9I TTAA 3 cut(s) 192, 201, 810
TscAI CASTG 2 cut(s) 117, 300
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 780
TspRI CASTG 2 cut(s) 117, 300
Van91I CCANNNNNTGG 1 cut(s) 846
Vha464I CTTAAG 1 cut(s) 200
VneI GTGCAC 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 9
XapI RAATTY 1 cut(s) 508
XceI RCATGY 2 cut(s) 502, 855
XmaJI CCTAGG 1 cut(s) 526
XmnI GAANNNNTTC 2 cut(s) 119, 287
XspI CTAG 1 cut(s) 527
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.