Rh5AG495600

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000125
Physical Location & Seq
Reverse (-)
84250221 .. 84251046
826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG495600.1

Sequence Viewer

Length: 525 bp
ATGGATCTACCTCAGGACGCCGTAGTAAACATTCTTATGAGGCTACCCACCAAATCAATTTGCTGCATCAGATGTGTTTCCAAGTCCTTCTCAACAATAATCGATAGCCCTTTGTTTGCTACACTCCACATGTCACGATTGCTCAACTCTGGTATGAACCCTGTCTCTGTAGCTGAAATTGTGTCCGAGTCCCTCTACGATATCTACGATATTGAATTTGTTTTCTACAACCTCTTTTTCTTTAAAAGAACACTTCCATATGGAGGTCCATGCTTCTTACTCAATCCTCTTGGGGGAGAAGTTTTGAAGATCCCAGCAAAGGAAATCAATCCAAGGAATTTTAGATTTCCAGAGGACTATTACGGCATGGGATTTGATAATACCGCCAACACCTACAAAATTGTTTGTGTTTCCGTTGATATTCGGAACTATCAGGTGGTGGCTTTTGTTTATGTATGTATTGGGGCAAAGTTCTTGCAAATGGTGAGAAATACAAGCTGGTCCTCCGGGTATGTTGAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

174

Amino Acids

19.8

Weight (kDa)

6.7

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 39 3.5e-10 F-box domain
F-box-like PF12937 2 - 42 2.5e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 384
AclWI GGATC 2 cut(s) 12, 304
AcsI RAATTY 2 cut(s) 215, 337
AcyI GRCGYC 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 263, 293, 319
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 215, 307
AluBI AGCT 2 cut(s) 173, 498
AluI AGCT 2 cut(s) 173, 498
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 12, 304
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 2 cut(s) 215, 337
AspS9I GGNCC 2 cut(s) 266, 501
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 496
AvaII GGWCC 2 cut(s) 266, 501
AxyI CCTNAGG 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 5, 379
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 508
Bme18I GGWCC 2 cut(s) 266, 501
BmgT120I GGNCC 2 cut(s) 266, 501
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 508
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 332
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 293, 319
Bse21I CCTNAGG 1 cut(s) 12
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 332
BseLI CCNNNNNNNGG 3 cut(s) 263, 293, 319
BseMII CTCAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 313
BshVI ATCGAT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 1 cut(s) 507
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 3 cut(s) 263, 293, 319
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 2 cut(s) 4, 309
BspACI CCGC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 25
BspDI ATCGAT 1 cut(s) 102
BspPI GGATC 2 cut(s) 12, 304
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 2 cut(s) 4, 309
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 332
BstACI GRCGYC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 2 cut(s) 7, 312
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 4, 309
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 2 cut(s) 4, 309
BstYI RGATCY 2 cut(s) 4, 309
Bsu15I ATCGAT 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 12
BsuTUI ATCGAT 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 266, 501
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 1 cut(s) 26
CviAII CATG 3 cut(s) 130, 270, 367
CviJI RGCY 5 cut(s) 43, 108, 173, 443, 498
CviKI_1 RGCY 5 cut(s) 43, 108, 173, 443, 498
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 6, 311
DpnII GATC 2 cut(s) 4, 309
DraI TTTAAA 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 332
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 266, 501
Eco81I CCTNAGG 1 cut(s) 12
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 3 cut(s) 133, 273, 370
FaqI GGGAC 1 cut(s) 175
FatI CATG 3 cut(s) 129, 269, 366
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 64
GsaI CCCAGC 1 cut(s) 317
HapII CCGG 1 cut(s) 507
HgaI GACGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 3 cut(s) 133, 273, 370
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 507
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 71, 187, 426
Hpy188III TCNNGA 3 cut(s) 14, 135, 350
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 66, 478
HpyF3I CTNAG 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 3 cut(s) 133, 273, 370
Kzo9I GATC 2 cut(s) 4, 309
LpnPI CCDG 7 cut(s) 135, 174, 327, 363, 419, 484, 520
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 132
MalI GATC 2 cut(s) 6, 311
MboI GATC 2 cut(s) 4, 309
MboII GAAGA 1 cut(s) 319
MflI RGATCY 2 cut(s) 4, 309
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 5 cut(s) 57, 177, 215, 337, 399
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 8 cut(s) 21, 33, 203, 242, 257, 297, 346, 514
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 1 cut(s) 508
NciI CCSGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 259
NdeII GATC 2 cut(s) 4, 309
NlaIII CATG 3 cut(s) 133, 273, 370
NmuCI GTSAC 1 cut(s) 132
NspI RCATGY 1 cut(s) 133
PciI ACATGT 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PscI ACATGT 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 313
PspPI GGNCC 2 cut(s) 266, 501
PsuI RGATCY 2 cut(s) 4, 309
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 4, 309
Sau96I GGNCC 2 cut(s) 266, 501
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 1 cut(s) 522
SetI ASST 7 cut(s) 13, 175, 234, 268, 395, 438, 500
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 2 cut(s) 266, 501
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 5 cut(s) 57, 177, 215, 337, 399
SsiI CCGC 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 506
StyI CCWWGG 1 cut(s) 332
TaqI TCGA 1 cut(s) 102
TasI AATT 5 cut(s) 57, 177, 215, 337, 399
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 403
VpaK11BI GGWCC 2 cut(s) 266, 501
XapI RAATTY 2 cut(s) 215, 337
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.