pycom09g19510

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
20358839 .. 20359504
666 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19510.2

Sequence Viewer

Length: 600 bp
ATGCTGCTGAAGTACCTACCTCAACTTATGCTTCTTGTCAAATCCTCACTCACTGGATGCTTTTACAACTTCAAGCCTTTGTGCTCACTGGATTACAATGTCAATGAAAACGCCTTGAAACTGAGAAACCATGGAATTGCATCTGAGATCTTCTTAACCAGCCATAACAATAGGTACAATGTACATTTTGTTTTCTGTAACTTGGTCTGCTTTAAAGAGCTCAAGTATGGAGTGCCAGCCGCACCATCCTATCGTAGAGGTCGTGCATTCTTCGATTGGTATGCTATGGGATTTGATAATATAACAAACACCTACAAGATTCTTCGTGTTTGTGGGAAACCATTTCCCAAAAACATGGTGGCCCAAATTCTTGTATTGGGAACAAGCACTTGGCAAGAGATAAGCTCAGTTCCTCCTTGTGAAGGATTAAGTCACAAGAACGTATCTGCTTGTGGGGATATGCATTGGGTGATCAATTGGGGGACGAGAATTACAGCAATGGGAGAAACTAGCAATATAATATCTTTCGATTTCAAGAAAGAGGAGTTCTATTGCATTCCTCATCCGCCCTTACGAAGTAACGGTTTCTGCCTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

200

Amino Acids

22.76

Weight (kDa)

8.96

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 240, 566
AcsI RAATTY 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 3 cut(s) 14, 176, 183
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 3 cut(s) 73, 118, 535
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AluBI AGCT 2 cut(s) 220, 405
AluI AGCT 2 cut(s) 220, 405
Alw21I GWGCWC 2 cut(s) 86, 222
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 481
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 86, 222
BccI CCATC 1 cut(s) 253
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BclI TGATCA 1 cut(s) 471
BfaI CTAG 1 cut(s) 510
BglII AGATCT 1 cut(s) 147
BisI GCNGC 2 cut(s) 5, 240
BlsI GCNGC 2 cut(s) 6, 241
BmgT120I GGNCC 1 cut(s) 361
BmsI GCATC 2 cut(s) 47, 149
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BpuEI CTTGAG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 58, 93
Bse3DI GCAATG 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 3 cut(s) 62, 245, 562
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 3 cut(s) 113, 135, 420
BseNI ACTGG 2 cut(s) 58, 93
BseRI GAGGAG 1 cut(s) 557
BshFI GGCC 1 cut(s) 362
BsiHKAI GWGCWC 2 cut(s) 86, 222
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 496
BsmI GAATGC 2 cut(s) 266, 555
BsnI GGCC 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 86, 222
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 2 cut(s) 147, 471
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 2 cut(s) 240, 566
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 3 cut(s) 114, 136, 419
BsrDI GCAATG 1 cut(s) 504
BsrGI TGTACA 1 cut(s) 181
BsrI ACTGG 2 cut(s) 58, 93
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 147, 471
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 3 cut(s) 122, 144, 406
BstDSI CCRYGG 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 420
BstF5I GGATG 3 cut(s) 62, 245, 562
BstKTI GATC 2 cut(s) 150, 474
BstMBI GATC 2 cut(s) 147, 471
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 3 cut(s) 62, 245, 562
BtsIMutI CAGTG 2 cut(s) 51, 86
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 3 cut(s) 13, 175, 182
CviAII CATG 2 cut(s) 131, 355
CviJI RGCY 6 cut(s) 76, 162, 220, 239, 362, 405
CviKI_1 RGCY 6 cut(s) 76, 162, 220, 239, 362, 405
CviQI GTAC 3 cut(s) 13, 175, 182
DdeI CTNAG 3 cut(s) 122, 144, 406
DpnI GATC 2 cut(s) 149, 473
DpnII GATC 2 cut(s) 147, 471
DraI TTTAAA 1 cut(s) 214
EciI GGCGGA 1 cut(s) 555
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 220
EcoNI CCTNNNNNAGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 2 cut(s) 134, 358
FaqI GGGAC 1 cut(s) 496
FatI CATG 2 cut(s) 130, 354
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 2 cut(s) 5, 240
FokI GGATG 3 cut(s) 69, 232, 549
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 5, 240
FspBI CTAG 1 cut(s) 510
GluI GCNGC 2 cut(s) 5, 240
HaeIII GGCC 1 cut(s) 362
Hin1II CATG 2 cut(s) 134, 358
HinfI GANTC 1 cut(s) 319
HphI GGTGA 1 cut(s) 481
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 535
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 4 cut(s) 140, 266, 463, 555
HpyF3I CTNAG 3 cut(s) 122, 144, 406
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 2 cut(s) 134, 358
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 2 cut(s) 147, 471
LpnPI CCDG 4 cut(s) 39, 74, 172, 249
LweI GCATC 2 cut(s) 47, 149
MaeI CTAG 1 cut(s) 510
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 3 cut(s) 197, 431, 578
MalI GATC 2 cut(s) 149, 473
MboI GATC 2 cut(s) 147, 471
MboII GAAGA 3 cut(s) 142, 262, 314
MfeI CAATTG 1 cut(s) 475
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 2 cut(s) 86, 222
MluCI AATT 4 cut(s) 135, 366, 475, 489
MnlI CCTC 6 cut(s) 30, 55, 251, 423, 535, 570
Mph1103I ATGCAT 1 cut(s) 465
MseI TTAA 3 cut(s) 155, 213, 428
MunI CAATTG 1 cut(s) 475
Mva1269I GAATGC 2 cut(s) 266, 555
NcoI CCATGG 1 cut(s) 130
NdeII GATC 2 cut(s) 147, 471
NlaIII CATG 2 cut(s) 134, 358
NmuCI GTSAC 1 cut(s) 431
NsiI ATGCAT 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PctI GAATGC 2 cut(s) 266, 555
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 2 cut(s) 6, 241
Psp124BI GAGCTC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 361
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 3 cut(s) 14, 176, 183
RsaNI GTAC 3 cut(s) 13, 175, 182
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 155, 213, 428
SatI GCNGC 2 cut(s) 5, 240
Sau3AI GATC 2 cut(s) 147, 471
Sau96I GGNCC 1 cut(s) 361
SduI GDGCHC 2 cut(s) 86, 222
SetI ASST 8 cut(s) 18, 22, 176, 222, 262, 314, 407, 444
SfaNI GCATC 2 cut(s) 47, 149
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 135, 366, 475, 489
SsiI CCGC 2 cut(s) 240, 566
SspMI CTAG 1 cut(s) 510
SstI GAGCTC 1 cut(s) 222
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 1 cut(s) 444
TaqI TCGA 2 cut(s) 273, 528
TasI AATT 4 cut(s) 135, 366, 475, 489
TatI WGTACW 1 cut(s) 181
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 3 cut(s) 155, 213, 428
Tru9I TTAA 3 cut(s) 155, 213, 428
TscAI CASTG 2 cut(s) 58, 93
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 2 cut(s) 58, 93
XagI CCTNNNNNAGG 1 cut(s) 420
XapI RAATTY 1 cut(s) 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.