Rh7AG121300

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000125
Physical Location & Seq
Reverse (-)
9485425 .. 9493097
7673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG121300.1

Sequence Viewer

Length: 435 bp
ATGCACAAAGCTTTTAGTTCATCTGAGGGAATTGTCCTTTCTCTGAGAAGGTATGGTATATCAGCACCTGCTATAAAGGAGGTGGAAGCATCTGTGGTGGCCTTCTCAAGGTCCGTCGACGACCACTCTTTCATTGCACTTCACAACCGGTTACTTGTGGATGCCAAAGGTGCTGTTGATGTCCCCCAACTTCTGGCTGCTAAAAATGTTCGATCATCTAGTTCCTCAAATTTTGTGGCTCTTCGATCGGTCAAGTACGACGGCAGCTCCTTAACAAAAGGCAACTATGCAGTCAAGGTATCGAGTAGCATGTACTTACATTTTATCTTCCATAATTTATTTGGCTTTAGATTGTGTGGTGATGTGCAGCAGTTCTTGTTAGTCAATCCACTAAGGAGAGGAGAAGTTATGACTTATGAGACTCCCAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

144

Amino Acids

15.88

Weight (kDa)

9.67

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 76
AccB7I CCANNNNNTGG 1 cut(s) 193
AccI GTMKAC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 2 cut(s) 257, 314
AfiI CCNNNNNNNGG 2 cut(s) 108, 193
AgeI ACCGGT 1 cut(s) 147
AluBI AGCT 2 cut(s) 11, 267
AluI AGCT 2 cut(s) 11, 267
Alw26I GTCTC 1 cut(s) 413
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 3 cut(s) 197, 264, 367
ApoI RAATTY 1 cut(s) 229
AsiGI ACCGGT 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 111
BbvI GCAGC 3 cut(s) 184, 276, 379
BceAI ACGGC 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 3 cut(s) 198, 265, 368
BlsI GCNGC 3 cut(s) 199, 266, 369
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmsI GCATC 2 cut(s) 98, 151
BpuEI CTTGAG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 193
Bse118I RCCGGY 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 132
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 108, 193
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 15, 35
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 3 cut(s) 184, 276, 379
BsgI GTGCAG 1 cut(s) 386
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 248
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 108, 193
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 212, 245
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 2 cut(s) 16, 36
BspMI ACCTGC 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 147
BssMI GATC 2 cut(s) 212, 245
Bst6I CTCTTC 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 24, 44, 392
BstENI CCTNNNNNAGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 215, 248
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 2 cut(s) 212, 245
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 313
BstV1I GCAGC 3 cut(s) 184, 276, 379
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 166
BveI ACCTGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 256, 313
CspAI ACCGGT 1 cut(s) 147
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 1 cut(s) 310
CviJI RGCY 6 cut(s) 11, 101, 197, 239, 267, 345
CviKI_1 RGCY 6 cut(s) 11, 101, 197, 239, 267, 345
CviQI GTAC 2 cut(s) 256, 313
DdeI CTNAG 3 cut(s) 24, 44, 392
DpnI GATC 2 cut(s) 214, 247
DpnII GATC 2 cut(s) 212, 245
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 111
EcoNI CCTNNNNNAGG 1 cut(s) 106
FaeI CATG 1 cut(s) 313
FaiI YATR 8 cut(s) 54, 59, 74, 288, 311, 333, 410, 417
FaqI GGGAC 1 cut(s) 167
FatI CATG 1 cut(s) 309
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 198, 265, 368
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 3 cut(s) 198, 265, 368
FspBI CTAG 1 cut(s) 219
GluI GCNGC 3 cut(s) 198, 265, 368
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 148
Hin1II CATG 1 cut(s) 313
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 1 cut(s) 421
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 25, 45
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 3 cut(s) 119, 122, 263
HpyAV CCTTC 2 cut(s) 42, 112
HpyCH4V TGCA 4 cut(s) 4, 137, 290, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 3 cut(s) 24, 44, 392
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 2 cut(s) 212, 245
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 3 cut(s) 81, 161, 179
Lsp1109I GCAGC 3 cut(s) 184, 276, 379
LweI GCATC 2 cut(s) 98, 151
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 150
MalI GATC 2 cut(s) 214, 247
MboI GATC 2 cut(s) 212, 245
MboII GAAGA 2 cut(s) 233, 319
MluCI AATT 3 cut(s) 30, 229, 334
MlyI GAGTC 1 cut(s) 415
MnlI CCTC 4 cut(s) 19, 73, 235, 392
MseI TTAA 1 cut(s) 272
MspI CCGG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 2 cut(s) 212, 245
NlaIII CATG 1 cut(s) 313
NspI RCATGY 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 193
PinAI ACCGGT 1 cut(s) 147
PkrI GCNGC 3 cut(s) 199, 266, 369
Ple19I CGATCG 1 cut(s) 248
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 68
PvuI CGATCG 1 cut(s) 248
RsaI GTAC 2 cut(s) 257, 314
RsaNI GTAC 2 cut(s) 256, 313
SalI GTCGAC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 3 cut(s) 198, 265, 368
Sau3AI GATC 2 cut(s) 212, 245
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 415
SetI ASST 8 cut(s) 13, 53, 70, 84, 113, 172, 269, 300
SfaNI GCATC 2 cut(s) 98, 151
SgrDI CGTCGACG 1 cut(s) 116
SinI GGWCC 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 3 cut(s) 30, 229, 334
SspMI CTAG 1 cut(s) 219
TaqI TCGA 4 cut(s) 117, 211, 244, 302
TaqII GACCGA 1 cut(s) 238
TasI AATT 3 cut(s) 30, 229, 334
TatI WGTACW 1 cut(s) 312
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseI GCWGC 3 cut(s) 197, 264, 367
TspDTI ATGAA 2 cut(s) 9, 121
TspGWI ACGGA 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 111
XagI CCTNNNNNAGG 1 cut(s) 106
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.