Prupe.2G095600_v2.0.a1

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000125
Physical Location & Seq
Reverse (-)
15065689 .. 15066471
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G095600.1

Sequence Viewer

Length: 753 bp
ATGGAGAAGCCAGAACTAAACTCGATGACAATCGGCGCTCTACCGCCAGAAATTCTTATCGACATCCTTTCGAGACTGCCCGTCAATTCAATTTGTTCCATGAGATGTGTATCTAAGGCCTTTTTAAAGACGGTTGACGACCCCTCTCTTGCAACAATGCACATGCGGCGTCGTTTTCTAACTACTTGTTCTACTACTACCACTGAAGTTCCTCGACTTGTTGTTCTTGATGAGTCTCCATTTGATCAACATGACGCGTTGCATCCATTGAAATACAACGGCAAAAAATTATTGACAAAGAGCAAACATGCAATTGTTTCCTATTTCGGATCCAGACGGCGTTTCTATTCTGCTGCTTTTGTTTTCTGCAACTTGTTTGGCTTTACTGGTCATAATCCTGAGCATGGAAGGTCATGCTTTAGGGGTCTTAATCTGGAGCATGCGAGGTCATGCTTGTTGGTGAATCCTTTCAGGGGAGAAGTTCTAATTCTCCCATCAGCGAGTGACGTCCAAGTTCCATCTAATAGTCCCAGCGATGTTGATTGGTATGGCATGGGATTTGATAATATAACATGTAGCTTCAAGATTGTTCGTGCCGAAGTTCTTGTATTGGGGACAAGCTCATGGCGGAAATTACCTACAGTTCCTCCTTGCATTCCAACCTGCAAGTCCGCATATGCACATGGAGACATGCATTGGTTGGTTCATGGAGATGACGGATCATCCGTACGTATACTTTCTTTTGACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

251

Amino Acids

27.94

Weight (kDa)

8.58

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 671
AccI GTMKAC 1 cut(s) 733
AccII CGCG 1 cut(s) 257
AciI CCGC 4 cut(s) 44, 166, 628, 672
AclWI GGATC 3 cut(s) 324, 337, 727
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 225
AcyI GRCGYC 2 cut(s) 169, 507
AfaI GTAC 1 cut(s) 729
AfiI CCNNNNNNNGG 2 cut(s) 404, 473
AflIII ACRYGT 2 cut(s) 255, 572
AgsI TTSAA 3 cut(s) 90, 271, 583
AhdI GACNNNNNGTC 1 cut(s) 80
AluBI AGCT 2 cut(s) 579, 621
AluI AGCT 2 cut(s) 579, 621
Alw26I GTCTC 3 cut(s) 67, 240, 681
AlwI GGATC 3 cut(s) 324, 337, 727
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 472
BamHI GGATCC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 340
BccI CCATC 2 cut(s) 502, 526
BceAI ACGGC 2 cut(s) 295, 353
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 3 cut(s) 67, 240, 681
BfmI CTRYAG 1 cut(s) 639
BfoI RGCGCY 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 671
BisI GCNGC 2 cut(s) 167, 354
BlsI GCNGC 2 cut(s) 168, 355
BmeRI GACNNNNNGTC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 455
Bpu10I CCTNAGC 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 731
BsaBI GATNNNNATC 2 cut(s) 29, 109
BsaHI GRCGYC 2 cut(s) 169, 507
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 473
Bse1I ACTGG 1 cut(s) 391
Bse8I GATNNNNATC 2 cut(s) 29, 109
BseGI GGATG 3 cut(s) 63, 262, 722
BseJI GATNNNNATC 2 cut(s) 29, 109
BseLI CCNNNNNNNGG 2 cut(s) 404, 473
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 119
BsiWI CGTACG 1 cut(s) 727
BslFI GGGAC 2 cut(s) 513, 628
BslI CCNNNNNNNGG 2 cut(s) 404, 473
BsmAI GTCTC 3 cut(s) 67, 240, 681
BsmFI GGGAC 2 cut(s) 513, 628
BsmI GAATGC 1 cut(s) 654
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 244, 329, 719
BspACI CCGC 4 cut(s) 44, 166, 628, 672
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 671
BspPI GGATC 3 cut(s) 324, 337, 727
BsrI ACTGG 1 cut(s) 391
BssMI GATC 3 cut(s) 244, 329, 719
BssNAI GTATAC 1 cut(s) 734
BssNI GRCGYC 2 cut(s) 169, 507
Bst1107I GTATAC 1 cut(s) 734
Bst4CI ACNGT 2 cut(s) 133, 643
BstACI GRCGYC 2 cut(s) 169, 507
BstBAI YACGTR 1 cut(s) 731
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 114, 399
BstF5I GGATG 3 cut(s) 63, 262, 722
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 3 cut(s) 247, 332, 722
BstMAI GTCTC 3 cut(s) 67, 240, 681
BstMBI GATC 3 cut(s) 244, 329, 719
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNSI RCATGY 5 cut(s) 166, 311, 443, 576, 694
BstSFI CTRYAG 1 cut(s) 639
BstSNI TACGTA 1 cut(s) 731
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BstZ17I GTATAC 1 cut(s) 734
BsuRI GGCC 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 549
BtsCI GGATG 3 cut(s) 63, 262, 722
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 671
Cac8I GCNNGC 1 cut(s) 441
CfoI GCGC 1 cut(s) 38
CseI GACGC 2 cut(s) 158, 263
Csp6I GTAC 1 cut(s) 728
CviJI RGCY 5 cut(s) 10, 119, 381, 579, 621
CviKI_1 RGCY 5 cut(s) 10, 119, 381, 579, 621
CviQI GTAC 1 cut(s) 728
DdeI CTNAG 2 cut(s) 114, 399
DpnI GATC 3 cut(s) 246, 331, 721
DpnII GATC 3 cut(s) 244, 329, 719
DraI TTTAAA 1 cut(s) 126
DriI GACNNNNNGTC 1 cut(s) 80
Eam1105I GACNNNNNGTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 643
Eco105I TACGTA 1 cut(s) 731
Eco147I AGGCCT 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 696
FaqI GGGAC 2 cut(s) 513, 628
FauNDI CATATG 1 cut(s) 676
FbaI TGATCA 1 cut(s) 244
FblI GTMKAC 1 cut(s) 733
Fnu4HI GCNGC 2 cut(s) 167, 354
FokI GGATG 3 cut(s) 50, 249, 709
Fsp4HI GCNGC 2 cut(s) 167, 354
GlaI GCGC 1 cut(s) 37
GluI GCNGC 2 cut(s) 167, 354
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 1 cut(s) 119
HgaI GACGC 2 cut(s) 158, 263
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 2 cut(s) 169, 507
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 2 cut(s) 233, 463
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 2 cut(s) 136, 734
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 6 cut(s) 72, 227, 333, 398, 434, 583
Hpy8I GTNNAC 2 cut(s) 136, 734
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 2 cut(s) 133, 643
HpyCH4IV ACGT 2 cut(s) 507, 730
HpyCH4V TGCA 9 cut(s) 152, 160, 262, 311, 369, 654, 666, 680, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 114, 399
HpySE526I ACGT 2 cut(s) 507, 730
Hsp92I GRCGYC 2 cut(s) 169, 507
HspAI GCGC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 244, 329, 719
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 9 cut(s) 24, 60, 346, 372, 411, 419, 457, 544, 676
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 1 cut(s) 271
MaeII ACGT 2 cut(s) 507, 730
MaeIII GTNAC 1 cut(s) 503
MalI GATC 3 cut(s) 246, 331, 721
MboI GATC 3 cut(s) 244, 329, 719
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 329
MluCI AATT 7 cut(s) 51, 85, 90, 287, 312, 486, 632
MluI ACGCGT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 683
MnlI CCTC 4 cut(s) 154, 222, 438, 657
Mph1103I ATGCAT 1 cut(s) 696
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 2 cut(s) 125, 429
MslI CAYNNNNRTG 1 cut(s) 711
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 654
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeI CATATG 1 cut(s) 676
NdeII GATC 3 cut(s) 244, 329, 719
NlaIV GGNNCC 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 696
NspI RCATGY 5 cut(s) 166, 311, 443, 576, 694
PaeI GCATGC 1 cut(s) 443
PceI AGGCCT 1 cut(s) 119
PciI ACATGT 1 cut(s) 572
PcsI WCGNNNNNNNCGW 1 cut(s) 723
PctI GAATGC 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 1 cut(s) 463
Pfl23II CGTACG 1 cut(s) 727
PkrI GCNGC 2 cut(s) 168, 355
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 731
PscI ACATGT 1 cut(s) 572
PspFI CCCAGC 1 cut(s) 530
PspLI CGTACG 1 cut(s) 727
PspN4I GGNNCC 1 cut(s) 331
PsuI RGATCY 1 cut(s) 329
RsaI GTAC 1 cut(s) 729
RsaNI GTAC 1 cut(s) 728
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 2 cut(s) 125, 429
SatI GCNGC 2 cut(s) 167, 354
Sau3AI GATC 3 cut(s) 244, 329, 719
SchI GAGTC 1 cut(s) 242
SetI ASST 8 cut(s) 413, 449, 510, 581, 623, 640, 665, 733
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 639
SmiMI CAYNNNNRTG 1 cut(s) 711
SnaBI TACGTA 1 cut(s) 731
SphI GCATGC 1 cut(s) 443
Sse9I AATT 7 cut(s) 51, 85, 90, 287, 312, 486, 632
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 4 cut(s) 44, 166, 628, 672
StuI AGGCCT 1 cut(s) 119
TaaI ACNGT 2 cut(s) 133, 643
TaiI ACGT 2 cut(s) 510, 733
TaqI TCGA 4 cut(s) 23, 60, 71, 214
TasI AATT 7 cut(s) 51, 85, 90, 287, 312, 486, 632
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 2 cut(s) 125, 429
Tru9I TTAA 2 cut(s) 125, 429
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 1 cut(s) 695
TspGWI ACGGA 2 cut(s) 715, 732
TspRI CASTG 1 cut(s) 208
XapI RAATTY 1 cut(s) 51
XceI RCATGY 5 cut(s) 166, 311, 443, 576, 694
XmiI GTMKAC 1 cut(s) 733
XmnI GAANNNNTTC 1 cut(s) 467
ZraI GACGTC 1 cut(s) 508
Zsp2I ATGCAT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.