Rh5AG034300

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000125
Physical Location & Seq
Forward (+)
2327198 .. 2328801
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG034300.1

Sequence Viewer

Length: 804 bp
ATGGTTGATGACCTCTCTTTTGTTGCACTGCACACCCGTTTTCTTATCGCCACCAACGCTGTTGCTCAAGTACCTCAACTTATGTCTTTTGCTGCATTGTTTCCATGTGAGCGTGGTGGAGTGACAGCAGACTTGCAACCCCTCAAATTTGTCAACAGTGCCTTGACAACAAGAGGAACATATTCAATGTATGTCTCCACATCACGCCGGTCCGATTGCCCAACTTACATGGTAGATTTTGTCTTTTGCAACTTGATTTGCTTCAAAAATATAAATAATCGTGGACAAGGAGTTTGCTTCTTAATCGATCTTTGTAGGAGACAAGTTCTAAGGCTCCCTAAGAACGATATTACCAAGAATGCAAAGTCTCCAATATTCTGTGACTGGTATGGTATGGGGTTTGATAGTATTACCAATACCCTCAAGATTCTTCGTGTTACAAAATTTGATGCAGCAGACTGCATGGTAGCTCAAGTTCTTGTACTAGGCAAAAGCTCATGGCGACAGATATCCTCCGCTCCTCTTTGTTATATGTTCGCTATTTGTAATTTATTTACGCCGAAGAATGCATGTGCCTATGGAGACATGCATTGGTTGCGTGGTGATGCCATGGTAAAAGAAAGTGAAGCTATAATTTCTTTTGACTTCAAAAAAGAAGAGTTTTGTTGGACGCCTCATCCCAAGCTACGAAGCTCGAAGGAGTACACTCGCTTCTCTGTTTTCTTCTTCCCAAATTATCCAAGAAAAGGACCGTGCCCCGTAGGCGGTTACAAACGGCTTGTCGTTGTTGCTCCTAGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

267

Amino Acids

30.22

Weight (kDa)

9.17

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 81 - 229 1.8e-11 F-box associated beta propeller domain
FBA_1 PF07734 126 - 234 3.6e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 518
AciI CCGC 2 cut(s) 516, 765
AcsI RAATTY 2 cut(s) 146, 443
AcyI GRCGYC 1 cut(s) 671
AfaI GTAC 3 cut(s) 72, 483, 704
AfiI CCNNNNNNNGG 2 cut(s) 746, 764
AgsI TTSAA 3 cut(s) 186, 265, 649
AluBI AGCT 5 cut(s) 470, 495, 629, 685, 693
AluI AGCT 5 cut(s) 470, 495, 629, 685, 693
Alw26I GTCTC 4 cut(s) 199, 313, 372, 576
ApeKI GCWGC 2 cut(s) 92, 452
ApoI RAATTY 2 cut(s) 146, 443
ArsI GACNNNNNNTTYG 5 cut(s) 34, 276, 308, 765, 797
Asp700I GAANNNNTTC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 210, 749
AsuHPI GGTGA 1 cut(s) 614
AvaII GGWCC 2 cut(s) 210, 749
BaeGI GKGCMC 1 cut(s) 758
BarI GAAGNNNNNNTAC 2 cut(s) 695, 727
BbvI GCAGC 2 cut(s) 79, 464
BceAI ACGGC 1 cut(s) 791
BcoDI GTCTC 4 cut(s) 199, 313, 372, 576
BfaI CTAG 3 cut(s) 485, 795, 802
BglI GCCNNNNNGGC 1 cut(s) 762
BisI GCNGC 2 cut(s) 93, 453
BlsI GCNGC 2 cut(s) 94, 454
Bme18I GGWCC 2 cut(s) 210, 749
BmgT120I GGNCC 2 cut(s) 210, 749
BmiI GGNNCC 1 cut(s) 335
BmsI GCATC 2 cut(s) 439, 595
BpuEI CTTGAG 3 cut(s) 51, 407, 456
Bsa29I ATCGAT 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 609
Bsc4I CCNNNNNNNGG 2 cut(s) 746, 764
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 389
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 609
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 2 cut(s) 746, 764
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 510
BseSI GKGCMC 1 cut(s) 758
BseXI GCAGC 2 cut(s) 79, 464
BsgI GTGCAG 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 306
BsiSI CCGG 1 cut(s) 208
BslI CCNNNNNNNGG 2 cut(s) 746, 764
BsmAI GTCTC 4 cut(s) 199, 313, 372, 576
BsmI GAATGC 2 cut(s) 364, 571
Bsp1286I GDGCHC 1 cut(s) 758
Bsp143I GATC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 2 cut(s) 516, 765
BspDI ATCGAT 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 335
BsrBI CCGCTC 1 cut(s) 518
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 609
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 671
BssT1I CCWWGG 1 cut(s) 609
Bst4CI ACNGT 2 cut(s) 158, 753
Bst6I CTCTTC 1 cut(s) 651
BstACI GRCGYC 1 cut(s) 671
BstAPI GCANNNNNTGC 1 cut(s) 595
BstDEI CTNAG 2 cut(s) 329, 339
BstDSI CCRYGG 1 cut(s) 609
BstF5I GGATG 1 cut(s) 676
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 4 cut(s) 199, 313, 372, 576
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 56, 595, 762
BstNSI RCATGY 2 cut(s) 573, 589
BstSLI GKGCMC 1 cut(s) 758
BstV1I GCAGC 2 cut(s) 79, 464
Bsu15I ATCGAT 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 609
BtsCI GGATG 1 cut(s) 676
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 26, 163
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 210, 749
ClaI ATCGAT 1 cut(s) 306
CpoI CGGWCCG 1 cut(s) 210
CseI GACGC 1 cut(s) 679
Csp6I GTAC 3 cut(s) 71, 482, 703
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 7 cut(s) 105, 229, 463, 498, 570, 586, 610
CviJI RGCY 7 cut(s) 334, 470, 495, 629, 685, 693, 778
CviKI_1 RGCY 7 cut(s) 334, 470, 495, 629, 685, 693, 778
CviQI GTAC 3 cut(s) 71, 482, 703
DdeI CTNAG 2 cut(s) 329, 339
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 609
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 2 cut(s) 210, 749
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 609
EcoT22I ATGCAT 2 cut(s) 571, 591
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 7 cut(s) 108, 232, 466, 501, 573, 589, 613
FatI CATG 7 cut(s) 104, 228, 462, 497, 569, 585, 609
Fnu4HI GCNGC 2 cut(s) 93, 453
FokI GGATG 1 cut(s) 663
Fsp4HI GCNGC 2 cut(s) 93, 453
FspBI CTAG 3 cut(s) 485, 795, 802
GluI GCNGC 2 cut(s) 93, 453
HapII CCGG 1 cut(s) 208
HgaI GACGC 1 cut(s) 679
Hin1I GRCGYC 1 cut(s) 671
Hin1II CATG 7 cut(s) 108, 232, 466, 501, 573, 589, 613
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 1 cut(s) 427
HpaII CCGG 1 cut(s) 208
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 3 cut(s) 154, 284, 705
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 3 cut(s) 154, 284, 705
HpyAV CCTTC 1 cut(s) 691
HpyCH4III ACNGT 2 cut(s) 158, 753
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 595, 762
HpyF3I CTNAG 2 cut(s) 329, 339
Hsp92I GRCGYC 1 cut(s) 671
Hsp92II CATG 7 cut(s) 108, 232, 466, 501, 573, 589, 613
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 3 cut(s) 339, 523, 796
LpnPI CCDG 2 cut(s) 221, 370
Lsp1109I GCAGC 2 cut(s) 79, 464
LweI GCATC 2 cut(s) 439, 595
MaeI CTAG 3 cut(s) 485, 795, 802
MaeIII GTNAC 5 cut(s) 121, 380, 436, 767, 797
MalI GATC 1 cut(s) 309
MbiI CCGCTC 1 cut(s) 518
MboI GATC 1 cut(s) 307
MboII GAAGA 5 cut(s) 422, 574, 668, 715, 718
MhlI GDGCHC 1 cut(s) 758
MluCI AATT 5 cut(s) 146, 443, 547, 633, 733
MmeI TCCRAC 1 cut(s) 647
MnlI CCTC 8 cut(s) 23, 84, 152, 167, 431, 523, 531, 684
Mph1103I ATGCAT 2 cut(s) 571, 591
MroXI GAANNNNTTC 1 cut(s) 181
MseI TTAA 1 cut(s) 302
MspI CCGG 1 cut(s) 208
Mva1269I GAATGC 2 cut(s) 364, 571
MwoI GCNNNNNNNGC 3 cut(s) 56, 595, 762
NcoI CCATGG 1 cut(s) 609
NdeII GATC 1 cut(s) 307
NlaIII CATG 7 cut(s) 108, 232, 466, 501, 573, 589, 613
NlaIV GGNNCC 1 cut(s) 335
NmuCI GTSAC 2 cut(s) 121, 380
NsiI ATGCAT 2 cut(s) 571, 591
NspI RCATGY 2 cut(s) 573, 589
PctI GAATGC 2 cut(s) 364, 571
PdmI GAANNNNTTC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 427
PkrI GCNGC 2 cut(s) 94, 454
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 2 cut(s) 210, 749
PsrI GAACNNNNNNTAC 2 cut(s) 459, 491
RsaI GTAC 3 cut(s) 72, 483, 704
RsaNI GTAC 3 cut(s) 71, 482, 703
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 2 cut(s) 93, 453
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 2 cut(s) 210, 749
SduI GDGCHC 1 cut(s) 758
SetI ASST 7 cut(s) 15, 76, 472, 497, 631, 687, 695
SfaNI GCATC 2 cut(s) 439, 595
SinI GGWCC 2 cut(s) 210, 749
SmlI CTYRAG 3 cut(s) 66, 422, 471
SmoI CTYRAG 3 cut(s) 66, 422, 471
Sse9I AATT 5 cut(s) 146, 443, 547, 633, 733
SsiI CCGC 2 cut(s) 516, 765
SspI AATATT 1 cut(s) 375
SspMI CTAG 3 cut(s) 485, 795, 802
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 2 cut(s) 158, 753
TaqI TCGA 2 cut(s) 306, 695
TasI AATT 5 cut(s) 146, 443, 547, 633, 733
TatI WGTACW 2 cut(s) 481, 702
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 33, 163
TseFI GTSAC 2 cut(s) 121, 380
TseI GCWGC 2 cut(s) 92, 452
Tsp45I GTSAC 2 cut(s) 121, 380
TspRI CASTG 2 cut(s) 33, 163
VpaK11BI GGWCC 2 cut(s) 210, 749
XapI RAATTY 2 cut(s) 146, 443
XceI RCATGY 2 cut(s) 573, 589
XmnI GAANNNNTTC 1 cut(s) 181
XspI CTAG 3 cut(s) 485, 795, 802
Zsp2I ATGCAT 2 cut(s) 571, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.