MD04G1179800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000125
Physical Location & Seq
Forward (+)
27089908 .. 27091215
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1179800.v1.1.491

Sequence Viewer

Length: 1308 bp
ATGAGGCACTGCAGCAACAGCAACAGAAACGTGATGGACCTGGACAACGATAACCTGGTCGACATTTTCTCTAGACTGCCGGCGGAATCAGTTTGTTCCGTGGGATGTGTCTCGAAAGCCTTGCACAACATAGTCAGCCGCCCCTCGTTTCTTAACCAGCACATGAGTTCTCTTGTTACTACCAACGCTGCTGCTGAAGTACCTCAACTTGTAATTGTTTCTCAGTCCAAAAAAAAGTACATGGCGGAGCTAATTGCCATGCAATCATTTGAATACGATGGCAATACTTTGGAAATGAGAAGAGATAAGACGAGGATTGTCTCAAAGATCATGTCTTGGTGGTACGAATATTTTTTCAATGTACATTTTGTTTTCTGCAACTTGATTTGCTTGAAAGACAGACACACTGGAAGCCGGTGCGTGTTGTTAAATCCGTTGAAGGGCGAAGCTGTGATGCTCCCGACTTGTATCGTCCAAGTTCCGGAACATCTAAAAACAACAGTATTCTCTTATTATTGGTTTGGTATGGGATTTGACAACACGACTAGTACACACAAAGTTGTTCAGGTTTGTGCGGATTCGGAGTACAACTATTGTGTTGCTCATGTTTATGTGTTGGGCACAAGATCATGGAGAGAGATCTGCTCGGTTCCTCCCTGTGATTTAACGGTCAAGAATTTATCAGCATATGGCGATATGCACTGGTTAATTCGTCGCGCAACAACTGGAAGAGCTCAAGCAAATATTCGCCACTGCATGAGTATACTGTCTTTCGATTTCAAGAAAGAGGAGTTCGGTTGGAATATTCCTGATCCCCCCTTAAGAAACATGCCGCGTAAGTTCCACTCTGTCCAGCGCTTTCACTTGATTAATCTGAGAGGATCTTTGTCCGTCGTTGATGCTTCATCAGATAAATACCTTGACATATGGATGTTGAAAAACTATGATGAAAAAGAGTGGGTCTTAGGTCACAGAATAGAAGCCAGAATGATTAATGCAGAATGTCGGTATAGAAGTTATAGGCTTTGGACTTGTTACGAATGGGGGCATGGGATATTTTTCAAACGTTCGAGAAAGAGCAACAGCACTGTAGTCCTTTTGGATCTAAGAACTGTTTGCATACATCGAGTAAAATGTCCGATATACCAAAAGGGGTTGTATACAAGCATCTTTAGTTATACCAGTAGCTTGATTTCCCTGAAAAGTTATGGGAATTTGATTCCGCTAAAACGTTATGGGAAGCCAACTGAAGCAGAAGAAAGTCGTCGCAGTGGTTCCCTTATGAACATTTGGCATTTATGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

436

Amino Acids

50.51

Weight (kDa)

9.18

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 51 3.1e-06 F-box domain
FBA_3 PF08268 119 - 378 2.6e-19 F-box associated beta propeller domain
FBA_1 PF07734 126 - 399 8.6e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 60, 763, 1160
AccII CGCG 2 cut(s) 717, 835
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 6 cut(s) 83, 139, 245, 575, 833, 1223
AclI AACGTT 2 cut(s) 1066, 1231
AclWI GGATC 3 cut(s) 806, 889, 1110
AcsI RAATTY 2 cut(s) 676, 1213
AcuI CTGAAG 2 cut(s) 216, 1269
AfaI GTAC 6 cut(s) 201, 239, 344, 363, 550, 587
AfeI AGCGCT 1 cut(s) 857
AfiI CCNNNNNNNGG 2 cut(s) 440, 481
AflII CTTAAG 1 cut(s) 820
AgsI TTSAA 7 cut(s) 272, 358, 394, 439, 781, 937, 1063
AhlI ACTAGT 1 cut(s) 545
AjnI CCWGG 2 cut(s) 39, 54
AluBI AGCT 4 cut(s) 250, 449, 734, 1188
AluI AGCT 4 cut(s) 250, 449, 734, 1188
Alw21I GWGCWC 1 cut(s) 736
Alw26I GTCTC 2 cut(s) 115, 325
AlwI GGATC 3 cut(s) 806, 889, 1110
Aor13HI TCCGGA 1 cut(s) 481
Aor51HI AGCGCT 1 cut(s) 857
ApeKI GCWGC 3 cut(s) 12, 188, 191
ApoI RAATTY 2 cut(s) 676, 1213
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AseI ATTAAT 2 cut(s) 870, 993
AspLEI GCGC 2 cut(s) 719, 858
AspS9I GGNCC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 623
BanII GRGCYC 1 cut(s) 736
Bbv12I GWGCWC 1 cut(s) 736
BbvI GCAGC 3 cut(s) 24, 175, 178
BccI CCATC 2 cut(s) 28, 272
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 2 cut(s) 41, 56
BcoDI GTCTC 2 cut(s) 115, 325
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 2 cut(s) 72, 546
BfmI CTRYAG 2 cut(s) 10, 1089
BfoI RGCGCY 1 cut(s) 859
BfrI CTTAAG 1 cut(s) 820
BglII AGATCT 1 cut(s) 639
BisI GCNGC 5 cut(s) 13, 139, 189, 192, 833
BlsI GCNGC 5 cut(s) 14, 140, 190, 193, 834
Bme1390I CCNGG 2 cut(s) 41, 56
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 651, 1276
BmrFI CCNGG 2 cut(s) 41, 56
BmsI GCATC 3 cut(s) 444, 889, 1176
BplI GAGNNNNNCTC 2 cut(s) 629, 661
BpuEI CTTGAG 1 cut(s) 720
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 481
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 481
Bse118I RCCGGY 2 cut(s) 79, 414
Bse1I ACTGG 4 cut(s) 412, 707, 730, 1182
BseAI TCCGGA 1 cut(s) 481
BseBI CCWGG 2 cut(s) 41, 56
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 110, 936
BseLI CCNNNNNNNGG 2 cut(s) 440, 481
BseMII CTCAG 2 cut(s) 236, 866
BseNI ACTGG 4 cut(s) 412, 707, 730, 1182
BseRI GAGGAG 1 cut(s) 803
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 3 cut(s) 24, 175, 178
Bsh1236I CGCG 2 cut(s) 717, 835
BsiHKAI GWGCWC 1 cut(s) 736
BsiSI CCGG 3 cut(s) 80, 415, 482
BslI CCNNNNNNNGG 2 cut(s) 440, 481
BsmAI GTCTC 2 cut(s) 115, 325
Bsp1286I GDGCHC 2 cut(s) 623, 736
Bsp13I TCCGGA 1 cut(s) 481
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 6 cut(s) 327, 626, 639, 811, 881, 1102
BspACI CCGC 6 cut(s) 83, 139, 245, 575, 833, 1223
BspCNI CTCAG 2 cut(s) 235, 867
BspEI TCCGGA 1 cut(s) 481
BspFNI CGCG 2 cut(s) 717, 835
BspLI GGNNCC 2 cut(s) 651, 1276
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 3 cut(s) 806, 889, 1110
BspQI GCTCTTC 1 cut(s) 724
BspTI CTTAAG 1 cut(s) 820
BsrFI RCCGGY 2 cut(s) 79, 414
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 4 cut(s) 412, 707, 730, 1182
BssAI RCCGGY 2 cut(s) 79, 414
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 6 cut(s) 327, 626, 639, 811, 881, 1102
BssNAI GTATAC 2 cut(s) 764, 1161
Bst1107I GTATAC 2 cut(s) 764, 1161
Bst2UI CCWGG 2 cut(s) 41, 56
Bst4CI ACNGT 5 cut(s) 502, 670, 768, 1090, 1114
Bst6I CTCTTC 2 cut(s) 295, 724
BstAFI CTTAAG 1 cut(s) 820
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 4 cut(s) 222, 875, 964, 1106
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 110, 936
BstFNI CGCG 2 cut(s) 717, 835
BstH2I RGCGCY 1 cut(s) 859
BstHHI GCGC 2 cut(s) 719, 858
BstKTI GATC 6 cut(s) 330, 629, 642, 814, 884, 1105
BstMAI GTCTC 2 cut(s) 115, 325
BstMBI GATC 6 cut(s) 327, 626, 639, 811, 881, 1102
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 2 cut(s) 41, 56
BstNSI RCATGY 1 cut(s) 832
BstSCI CCNGG 2 cut(s) 39, 54
BstSFI CTRYAG 2 cut(s) 10, 1089
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 2 cut(s) 717, 835
BstV1I GCAGC 3 cut(s) 24, 175, 178
BstX2I RGATCY 3 cut(s) 639, 881, 1102
BstYI RGATCY 3 cut(s) 639, 881, 1102
BstZ17I GTATAC 2 cut(s) 764, 1161
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 110, 936
BtsI GCAGTG 3 cut(s) 7, 751, 1276
BtsIMutI CAGTG 6 cut(s) 7, 405, 700, 751, 1086, 1276
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 2 cut(s) 719, 858
Cfr10I RCCGGY 2 cut(s) 79, 414
Cfr13I GGNCC 1 cut(s) 37
CsiI ACCWGGT 1 cut(s) 54
Csp6I GTAC 6 cut(s) 200, 238, 343, 362, 549, 586
CviAII CATG 9 cut(s) 163, 241, 259, 331, 605, 630, 757, 829, 1049
CviQI GTAC 6 cut(s) 200, 238, 343, 362, 549, 586
DdeI CTNAG 4 cut(s) 222, 875, 964, 1106
DpnI GATC 6 cut(s) 329, 628, 641, 813, 883, 1104
DpnII GATC 6 cut(s) 327, 626, 639, 811, 881, 1102
Eam1104I CTCTTC 2 cut(s) 295, 724
EarI CTCTTC 2 cut(s) 295, 724
EciI GGCGGA 2 cut(s) 98, 260
Ecl136II GAGCTC 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 37
Eco47III AGCGCT 1 cut(s) 857
Eco53kI GAGCTC 1 cut(s) 734
Eco57I CTGAAG 2 cut(s) 216, 1269
EcoICRI GAGCTC 1 cut(s) 734
EcoRII CCWGG 2 cut(s) 39, 54
EcoT38I GRGCYC 1 cut(s) 736
FaeI CATG 9 cut(s) 166, 244, 262, 334, 608, 633, 760, 832, 1052
FatI CATG 9 cut(s) 162, 240, 258, 330, 604, 629, 756, 828, 1048
FauNDI CATATG 2 cut(s) 688, 926
FblI GTMKAC 3 cut(s) 60, 763, 1160
Fnu4HI GCNGC 5 cut(s) 13, 139, 189, 192, 833
FokI GGATG 2 cut(s) 117, 943
FriOI GRGCYC 1 cut(s) 736
Fsp4HI GCNGC 5 cut(s) 13, 139, 189, 192, 833
FspBI CTAG 2 cut(s) 72, 546
GlaI GCGC 2 cut(s) 718, 857
GluI GCNGC 5 cut(s) 13, 139, 189, 192, 833
HaeII RGCGCY 1 cut(s) 859
HapII CCGG 3 cut(s) 80, 415, 482
HhaI GCGC 2 cut(s) 719, 858
Hin1II CATG 9 cut(s) 166, 244, 262, 334, 608, 633, 760, 832, 1052
Hin6I GCGC 2 cut(s) 717, 856
HinP1I GCGC 2 cut(s) 717, 856
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 3 cut(s) 86, 578, 1219
HpaII CCGG 3 cut(s) 80, 415, 482
Hpy166II GTNNAC 4 cut(s) 61, 551, 764, 1161
Hpy188I TCNGA 4 cut(s) 583, 876, 910, 1140
Hpy188III TCNNGA 8 cut(s) 72, 112, 460, 482, 673, 781, 809, 1071
Hpy8I GTNNAC 4 cut(s) 61, 551, 764, 1161
Hpy99I CGWCG 3 cut(s) 717, 896, 1269
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 5 cut(s) 502, 670, 768, 1090, 1114
HpyCH4IV ACGT 3 cut(s) 30, 1066, 1231
HpyCH4V TGCA 8 cut(s) 12, 124, 262, 378, 700, 756, 998, 1119
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 4 cut(s) 222, 875, 964, 1106
HpySE526I ACGT 3 cut(s) 30, 1066, 1231
Hsp92II CATG 9 cut(s) 166, 244, 262, 334, 608, 633, 760, 832, 1052
HspAI GCGC 2 cut(s) 717, 856
Kpn2I TCCGGA 1 cut(s) 481
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 6 cut(s) 327, 626, 639, 811, 881, 1102
LguI GCTCTTC 1 cut(s) 724
LmnI GCTCC 2 cut(s) 247, 462
Lsp1109I GCAGC 3 cut(s) 24, 175, 178
LweI GCATC 3 cut(s) 444, 889, 1176
MabI ACCWGGT 1 cut(s) 54
MaeI CTAG 2 cut(s) 72, 546
MaeII ACGT 3 cut(s) 30, 1066, 1231
MaeIII GTNAC 4 cut(s) 175, 968, 1034, 1301
MalI GATC 6 cut(s) 329, 628, 641, 813, 883, 1104
MboI GATC 6 cut(s) 327, 626, 639, 811, 881, 1102
MboII GAAGA 3 cut(s) 312, 741, 1268
MflI RGATCY 3 cut(s) 639, 881, 1102
MhlI GDGCHC 2 cut(s) 623, 736
MluCI AATT 5 cut(s) 213, 252, 676, 708, 1213
MmeI TCCRAC 1 cut(s) 779
MnlI CCTC 6 cut(s) 154, 213, 306, 663, 781, 872
MroI TCCGGA 1 cut(s) 481
MroNI GCCGGC 1 cut(s) 79
MseI TTAA 7 cut(s) 153, 428, 665, 707, 821, 870, 993
MslI CAYNNNNRTG 2 cut(s) 609, 929
MspCI CTTAAG 1 cut(s) 820
MspI CCGG 3 cut(s) 80, 415, 482
MspR9I CCNGG 2 cut(s) 41, 56
MvaI CCWGG 2 cut(s) 41, 56
MvnI CGCG 2 cut(s) 717, 835
MwoI GCNNNNNNNGC 1 cut(s) 18
NaeI GCCGGC 1 cut(s) 81
NdeI CATATG 2 cut(s) 688, 926
NdeII GATC 6 cut(s) 327, 626, 639, 811, 881, 1102
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 9 cut(s) 166, 244, 262, 334, 608, 633, 760, 832, 1052
NlaIV GGNNCC 2 cut(s) 651, 1276
NmuCI GTSAC 1 cut(s) 968
NspI RCATGY 1 cut(s) 832
PciSI GCTCTTC 1 cut(s) 724
PdiI GCCGGC 1 cut(s) 81
PfeI GAWTC 3 cut(s) 86, 578, 1219
PkrI GCNGC 5 cut(s) 14, 140, 190, 193, 834
PshBI ATTAAT 2 cut(s) 870, 993
Psp124BI GAGCTC 1 cut(s) 736
Psp1406I AACGTT 2 cut(s) 1066, 1231
Psp6I CCWGG 2 cut(s) 39, 54
PspGI CCWGG 2 cut(s) 39, 54
PspN4I GGNNCC 2 cut(s) 651, 1276
PspPI GGNCC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 14
PsuI RGATCY 3 cut(s) 639, 881, 1102
RsaI GTAC 6 cut(s) 201, 239, 344, 363, 550, 587
RsaNI GTAC 6 cut(s) 200, 238, 343, 362, 549, 586
RseI CAYNNNNRTG 2 cut(s) 609, 929
SacI GAGCTC 1 cut(s) 736
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 724
SaqAI TTAA 7 cut(s) 153, 428, 665, 707, 821, 870, 993
SatI GCNGC 5 cut(s) 13, 139, 189, 192, 833
Sau3AI GATC 6 cut(s) 327, 626, 639, 811, 881, 1102
Sau96I GGNCC 1 cut(s) 37
ScrFI CCNGG 2 cut(s) 41, 56
SduI GDGCHC 2 cut(s) 623, 736
SexAI ACCWGGT 1 cut(s) 54
SfaNI GCATC 3 cut(s) 444, 889, 1176
SfcI CTRYAG 2 cut(s) 10, 1089
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 609, 929
SmlI CTYRAG 2 cut(s) 735, 820
SmoI CTYRAG 2 cut(s) 735, 820
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 5 cut(s) 213, 252, 676, 708, 1213
SsiI CCGC 6 cut(s) 83, 139, 245, 575, 833, 1223
SspI AATATT 3 cut(s) 350, 745, 805
SspMI CTAG 2 cut(s) 72, 546
SstI GAGCTC 1 cut(s) 736
StyD4I CCNGG 2 cut(s) 39, 54
TaaI ACNGT 5 cut(s) 502, 670, 768, 1090, 1114
TaiI ACGT 3 cut(s) 33, 1069, 1234
TaqI TCGA 5 cut(s) 60, 113, 774, 1070, 1126
TasI AATT 5 cut(s) 213, 252, 676, 708, 1213
TatI WGTACW 4 cut(s) 237, 361, 548, 585
TauI GCSGC 2 cut(s) 141, 835
TfiI GAWTC 3 cut(s) 86, 578, 1219
Tru1I TTAA 7 cut(s) 153, 428, 665, 707, 821, 870, 993
Tru9I TTAA 7 cut(s) 153, 428, 665, 707, 821, 870, 993
TscAI CASTG 6 cut(s) 14, 412, 707, 758, 1093, 1276
TseFI GTSAC 1 cut(s) 968
TseI GCWGC 3 cut(s) 12, 188, 191
Tsp45I GTSAC 1 cut(s) 968
TspDTI ATGAA 3 cut(s) 894, 963, 1298
TspGWI ACGGA 3 cut(s) 88, 423, 880
TspRI CASTG 6 cut(s) 14, 412, 707, 758, 1093, 1276
Vha464I CTTAAG 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 37
VspI ATTAAT 2 cut(s) 870, 993
XapI RAATTY 2 cut(s) 676, 1213
XbaI TCTAGA 1 cut(s) 71
XceI RCATGY 1 cut(s) 832
XmiI GTMKAC 3 cut(s) 60, 763, 1160
XspI CTAG 2 cut(s) 72, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.