Rroxscaffold_6G00420290

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000125
Physical Location & Seq
Reverse (-)
41582487 .. 41586858
4372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420290.1

Sequence Viewer

Length: 2169 bp
ATGGCGAGGGCACAGAGAATGAAAAGCAGCAATAACGCAGAGCTAAAGGTGATGGACCTATTAGAATTGCCCTTGGATATCCTCATTAACATCCTCTCGAGATTGCCAGCCGAATCACTCCTCTGCATCCGATGCGTGTCTAAGGCCTTGTTAAACATGGTTGATGACCCCTCTTTTCCTAGACTACACGCGCATCTTCAAGTGCCTCAACTCATGCTTTTTAGTGGTCAAAAATATCATCCTAGGCCTGGGGGTATTGAAGTTTTAGCATCCCTGCAATCGGTCAAATACGACGGCTACAAGGCCTTGACAAAAGGCCAATATGAAATTAGTGTCACCGCAAGGAAAATATACAACTCCGAGGACTCACATTACAAAATAGATTTTGTTTTCTGCAACTTGTTTTTCTTGAGAAAATCTTGGGGAATTGGTCGCTTCTTAGTCAATCCTCTTAGGGGAGGAGAAGTTCTAAGACTTCCAATGAGTGACATTACAACGTATGGCAAGTATTTCAATGTGACCCGGGATTGGTATGGTATGGGATTTGATGATCTAACAAATACATACAAGATTGTTCGTGTCTCCAGAGTTTTTAACGGTAGCTATACAGAGAACTGTCTTGTAACCCAGGTTCTTGTATTAGGCGAAAGCTCATGGAGAGAGATACTTTCGGTTCCCCCAGGTGACTTAAATGCTAATGAGCGTTCATACATTGTGAAGAACGTATGTGCCAATGGAGACATGCATTGGTTAATTACTGGCAATTTCACAATGAAAGGAAGTGAAGGAACATGCCACATAATTTCTTTCGACTTCAAGAGAGAAGAGTTCTGTTGGATTCCTCATCCCATATTACAAAGCTCGAAGGTGAGCTCGGACTTGTACTTCAACTTGCACTTGCTTACCCTGAGAGGATCTATGGCCTTGATGTATCAGTCTGCATTACAAGGTGGGACAATGGATATTGAGATATGGGTGTTAAAAAATTATGATAAAAAAGAGTGGACACGAGATTACATCATAAATAGCAAACATTTTGATGGATCTTGCCATGAATGGGAGCACGGCATATTTTTCAAAGCATCTACCTATACAGTCTTTTTGGATCTCAATTGTTTTTCCGTGAATTACATAACATGTGAGTACGGAGAGTATCCTACCATCTTGAGTTACACTAGGAGCTTGGTTTCCTTAAAACAATATGGGAATTTGGTTGAAGGTGAACCATCAGATTATGGAAGCCTGGAAAGTTATGGCAAATTGATTGAAAGAGAAGAACAGGGCTTTAGTTTATCTGAGAGGCACGTGCTGAGATACACTTCATCAGGAGTTGATGACCTCTTTTTTGTTACACTGCACAAGCGTTTACTCATCACCACCAACAATGTTGCTCAAGTGCCTCAACTCATGTCTTTTGCTCGGCAGTCTGCTCACGAGATTAGTCCAGTTATAGGGGCCTTGCAACCACTGAAATACGATGGCAGGGCCTTGACGAAAGGAAAATATGCAATTAATGTCTCCACATCATCAGACTGGCCTGACTACACGGCTTACACCATAGACTTTGTTTTCTGCAACTTGTTTTGCTTTCGAAATATAGATGATCGGGGCCTTTGCTTCTTGTTCAATCCTAACGGCCGGGGAGAAGTTCTAGGGCTCCCTAGGAATGAAGTTACCAAGTATGTTAATTTTTCTCATGGAGACCGTGATTGGTATGGTATGGGATTTGATAATATGACCAACACCCACAAGATTGTTTGCGTTTCCAGAGTTTCTAACGGTAGCTGTAAAGAGAGCTGCCTTGTAGCCCAAGTTCTTGTATTAGGCACAAGCTCATGGCAAGAGATACCCTCAGTTCCTCCTGGTAATTTAGATTATGATTTAAGCTTTGTGAAGAATGTATGCGCCCATAGAGACATGCATTGGTTAATTACTGGTAATTTCATAAGAGAAGGAAGTGAAGGAACATGCCATATAATTTCTTTCGACTTCAAGAAAGAAGAGTTCTATTGGACTCCTCATCCCATGTTACAAAGCTCGAACAAGCACTTGGACTTCTTCGACTTACACTTGCTTACTCTAAGAGGATCTATGGCCCTGGTGTCTACTTCATCATCAGTAGGTGGGACGACGGATATTGAGATATGGGTGTTAAAAGATTATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

722

Amino Acids

82.35

Weight (kDa)

6.28

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 60 1.1e-08 F-box domain
F-box-like PF12937 21 - 58 4.2e-06 F-box-like
FBA_1 PF07734 109 - 338 8.7e-16 F-box associated beta propeller domain
FBA_3 PF08268 178 - 345 4e-17 F-box associated beta propeller domain
FBA_3 PF08268 526 - 721 3.8e-12 F-box associated beta propeller domain
FBA_1 PF07734 563 - 721 7.9e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 2105
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 339
AclWI GGATC 4 cut(s) 922, 1051, 1113, 2095
AcoI YGGCCR 1 cut(s) 1636
AcsI RAATTY 1 cut(s) 1207
AcvI CACGTG 1 cut(s) 1306
AfaI GTAC 2 cut(s) 884, 1145
AfiI CCNNNNNNNGG 6 cut(s) 248, 280, 455, 528, 1057, 1451
AflIII ACRYGT 1 cut(s) 1136
AjnI CCWGG 6 cut(s) 247, 627, 679, 1242, 1861, 2097
AjuI GAANNNNNNNTTGG 2 cut(s) 2033, 2065
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
Alw21I GWGCWC 2 cut(s) 875, 1065
Alw26I GTCTC 5 cut(s) 586, 732, 1522, 1695, 1908
AlwI GGATC 4 cut(s) 922, 1051, 1113, 2095
Ama87I CYCGRG 2 cut(s) 97, 522
ApeKI GCWGC 2 cut(s) 27, 1797
ApoI RAATTY 1 cut(s) 1207
ArsI GACNNNNNNTTYG 2 cut(s) 1328, 1360
AseI ATTAAT 1 cut(s) 1512
AspA2I CCTAGG 2 cut(s) 242, 1661
AspLEI GCGC 2 cut(s) 193, 1907
AspS9I GGNCC 5 cut(s) 55, 1455, 1485, 1609, 2095
AsuC2I CCSGG 3 cut(s) 523, 524, 1640
AsuHPI GGTGA 6 cut(s) 61, 328, 695, 880, 1232, 1366
AsuII TTCGAA 1 cut(s) 1591
AvaI CYCGRG 2 cut(s) 97, 522
AvaII GGWCC 1 cut(s) 55
AvrII CCTAGG 2 cut(s) 242, 1661
BaeGI GKGCMC 1 cut(s) 13
BanII GRGCYC 2 cut(s) 875, 1659
BauI CACGAG 2 cut(s) 1008, 1433
BbrPI CACGTG 1 cut(s) 1306
Bbv12I GWGCWC 2 cut(s) 875, 1065
BbvI GCAGC 2 cut(s) 39, 1784
BccI CCATC 5 cut(s) 46, 1034, 1169, 1234, 1472
BceAI ACGGC 4 cut(s) 310, 1081, 1563, 1651
BciT130I CCWGG 6 cut(s) 249, 629, 681, 1244, 1863, 2099
BciVI GTATCC 1 cut(s) 1164
BcnI CCSGG 3 cut(s) 523, 524, 1640
BcoDI GTCTC 5 cut(s) 586, 732, 1522, 1695, 1908
BfaI CTAG 5 cut(s) 180, 243, 1176, 1652, 1662
BfuI GTATCC 1 cut(s) 1164
BisI GCNGC 2 cut(s) 28, 1798
BlnI CCTAGG 2 cut(s) 242, 1661
BlsI GCNGC 2 cut(s) 29, 1799
Bme1390I CCNGG 9 cut(s) 249, 523, 524, 629, 681, 1244, 1640, 1863, 2099
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 2 cut(s) 97, 522
BmgT120I GGNCC 5 cut(s) 55, 1455, 1485, 1609, 2095
BmiI GGNNCC 4 cut(s) 675, 1456, 1610, 1658
BmrFI CCNGG 9 cut(s) 249, 523, 524, 629, 681, 1244, 1640, 1863, 2099
BmsI GCATC 5 cut(s) 122, 135, 202, 278, 1091
BplI GAGNNNNNCTC 2 cut(s) 1835, 1867
BpmI CTGGAG 1 cut(s) 568
Bpu14I TTCGAA 1 cut(s) 1591
BpuEI CTTGAG 3 cut(s) 430, 1186, 1377
BpuMI CCSGG 3 cut(s) 523, 524, 1640
BsaAI YACGTR 1 cut(s) 1306
BsaI GGTCTC 1 cut(s) 1695
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 6 cut(s) 248, 280, 455, 528, 1057, 1451
Bse1I ACTGG 4 cut(s) 763, 1445, 1538, 1939
BseBI CCWGG 6 cut(s) 249, 629, 681, 1244, 1863, 2099
BseGI GGATG 6 cut(s) 90, 126, 238, 269, 844, 2020
BseLI CCNNNNNNNGG 6 cut(s) 248, 280, 455, 528, 1057, 1451
BseMII CTCAG 4 cut(s) 899, 1287, 1301, 1866
BseNI ACTGG 4 cut(s) 763, 1445, 1538, 1939
BseRI GAGGAG 3 cut(s) 110, 474, 2007
BseSI GKGCMC 1 cut(s) 13
BseX3I CGGCCG 1 cut(s) 1636
BseXI GCAGC 2 cut(s) 39, 1784
BsgI GTGCAG 1 cut(s) 1340
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 1639
BsiEI CGRYCG 1 cut(s) 1639
BsiHKAI GWGCWC 2 cut(s) 875, 1065
BsiHKCI CYCGRG 2 cut(s) 97, 522
BsiSI CCGG 2 cut(s) 523, 1639
BslFI GGGAC 2 cut(s) 967, 2140
BslI CCNNNNNNNGG 6 cut(s) 248, 280, 455, 528, 1057, 1451
BsmAI GTCTC 5 cut(s) 586, 732, 1522, 1695, 1908
BsmFI GGGAC 2 cut(s) 967, 2140
Bso31I GGTCTC 1 cut(s) 1695
BsoBI CYCGRG 2 cut(s) 97, 522
Bsp119I TTCGAA 1 cut(s) 1591
Bsp1286I GDGCHC 4 cut(s) 13, 875, 1065, 1659
Bsp143I GATC 6 cut(s) 550, 914, 1043, 1105, 1603, 2087
BspACI CCGC 1 cut(s) 339
BspCNI CTCAG 4 cut(s) 900, 1288, 1302, 1865
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 4 cut(s) 675, 1456, 1610, 1658
BspPI GGATC 4 cut(s) 922, 1051, 1113, 2095
BspT104I TTCGAA 1 cut(s) 1591
BspTNI GGTCTC 1 cut(s) 1695
BsrI ACTGG 4 cut(s) 763, 1445, 1538, 1939
BssMI GATC 6 cut(s) 550, 914, 1043, 1105, 1603, 2087
BssSI CACGAG 2 cut(s) 1008, 1433
BssT1I CCWWGG 3 cut(s) 72, 242, 1661
Bst2BI CACGAG 2 cut(s) 1008, 1433
Bst2UI CCWGG 6 cut(s) 249, 629, 681, 1244, 1863, 2099
Bst4CI ACNGT 5 cut(s) 599, 617, 1096, 1706, 1781
Bst6I CTCTTC 2 cut(s) 819, 1995
BstAPI GCANNNNNTGC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 1306
BstBI TTCGAA 1 cut(s) 1591
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 9 cut(s) 141, 439, 452, 470, 908, 1296, 1310, 1852, 2081
BstF5I GGATG 6 cut(s) 90, 126, 238, 269, 844, 2020
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 2 cut(s) 193, 1907
BstKTI GATC 6 cut(s) 553, 917, 1046, 1108, 1606, 2090
BstMAI GTCTC 5 cut(s) 586, 732, 1522, 1695, 1908
BstMBI GATC 6 cut(s) 550, 914, 1043, 1105, 1603, 2087
BstMCI CGRYCG 1 cut(s) 1639
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 6 cut(s) 249, 629, 681, 1244, 1863, 2099
BstNSI RCATGY 5 cut(s) 745, 795, 1140, 1921, 1971
BstSCI CCNGG 9 cut(s) 247, 521, 522, 627, 679, 1242, 1638, 1861, 2097
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 39, 1784
BstX2I RGATCY 4 cut(s) 914, 1043, 1105, 2087
BstYI RGATCY 4 cut(s) 914, 1043, 1105, 2087
BstZI CGGCCG 1 cut(s) 1636
BsuI GTATCC 1 cut(s) 1164
BtsCI GGATG 6 cut(s) 90, 126, 238, 269, 844, 2020
BtsI GCAGTG 1 cut(s) 1352
BtsIMutI CAGTG 2 cut(s) 1352, 1466
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 2 cut(s) 193, 1907
Cfr13I GGNCC 5 cut(s) 55, 1455, 1485, 1609, 2095
Cfr9I CCCGGG 1 cut(s) 522
Csp6I GTAC 2 cut(s) 883, 1144
CviQI GTAC 2 cut(s) 883, 1144
DdeI CTNAG 9 cut(s) 141, 439, 452, 470, 908, 1296, 1310, 1852, 2081
DpnI GATC 6 cut(s) 552, 916, 1045, 1107, 1605, 2089
DpnII GATC 6 cut(s) 550, 914, 1043, 1105, 1603, 2087
EaeI YGGCCR 1 cut(s) 1636
EagI CGGCCG 1 cut(s) 1636
Eam1104I CTCTTC 2 cut(s) 819, 1995
EarI CTCTTC 2 cut(s) 819, 1995
Ecl136II GAGCTC 1 cut(s) 873
EclXI CGGCCG 1 cut(s) 1636
Eco130I CCWWGG 3 cut(s) 72, 242, 1661
Eco147I AGGCCT 3 cut(s) 146, 247, 305
Eco24I GRGCYC 2 cut(s) 875, 1659
Eco31I GGTCTC 1 cut(s) 1695
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 55
Eco52I CGGCCG 1 cut(s) 1636
Eco53kI GAGCTC 1 cut(s) 873
Eco72I CACGTG 1 cut(s) 1306
Eco88I CYCGRG 2 cut(s) 97, 522
EcoICRI GAGCTC 1 cut(s) 873
EcoO109I RGGNCCY 3 cut(s) 1455, 1485, 1609
EcoRII CCWGG 6 cut(s) 247, 627, 679, 1242, 1861, 2097
EcoRV GATATC 1 cut(s) 79
EcoT14I CCWWGG 3 cut(s) 72, 242, 1661
EcoT22I ATGCAT 2 cut(s) 747, 1923
EcoT38I GRGCYC 2 cut(s) 875, 1659
ErhI CCWWGG 3 cut(s) 72, 242, 1661
FaqI GGGAC 2 cut(s) 967, 2140
FblI GTMKAC 1 cut(s) 2105
Fnu4HI GCNGC 2 cut(s) 28, 1798
FokI GGATG 6 cut(s) 77, 113, 225, 256, 831, 2007
FriOI GRGCYC 2 cut(s) 875, 1659
Fsp4HI GCNGC 2 cut(s) 28, 1798
FspBI CTAG 5 cut(s) 180, 243, 1176, 1652, 1662
GlaI GCGC 2 cut(s) 192, 1906
GluI GCNGC 2 cut(s) 28, 1798
GsuI CTGGAG 1 cut(s) 568
HapII CCGG 2 cut(s) 523, 1639
HhaI GCGC 2 cut(s) 193, 1907
Hin6I GCGC 2 cut(s) 191, 1905
HinP1I GCGC 2 cut(s) 191, 1905
HindIII AAGCTT 1 cut(s) 1885
HinfI GANTC 4 cut(s) 113, 365, 838, 2014
HpaII CCGG 2 cut(s) 523, 1639
HphI GGTGA 6 cut(s) 61, 328, 695, 880, 1232, 1366
Hpy166II GTNNAC 4 cut(s) 1005, 1223, 1367, 2106
Hpy188I TCNGA 6 cut(s) 131, 361, 877, 1231, 1297, 1531
Hpy8I GTNNAC 4 cut(s) 1005, 1223, 1367, 2106
Hpy99I CGWCG 2 cut(s) 296, 2134
HpyAV CCTTC 5 cut(s) 779, 859, 1211, 1946, 1955
HpyCH4III ACNGT 5 cut(s) 599, 617, 1096, 1706, 1781
HpyCH4IV ACGT 3 cut(s) 497, 723, 1305
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 9 cut(s) 141, 439, 452, 470, 908, 1296, 1310, 1852, 2081
HpySE526I ACGT 3 cut(s) 497, 723, 1305
HspAI GCGC 2 cut(s) 191, 1905
Kzo9I GATC 6 cut(s) 550, 914, 1043, 1105, 1603, 2087
LmnI GCTCC 3 cut(s) 1060, 1179, 1662
Lsp1109I GCAGC 2 cut(s) 39, 1784
LweI GCATC 5 cut(s) 122, 135, 202, 278, 1091
MaeI CTAG 5 cut(s) 180, 243, 1176, 1652, 1662
MaeII ACGT 3 cut(s) 497, 723, 1305
MaeIII GTNAC 9 cut(s) 334, 485, 517, 622, 683, 1169, 1348, 1672, 2028
MalI GATC 6 cut(s) 552, 916, 1045, 1107, 1605, 2089
MboI GATC 6 cut(s) 550, 914, 1043, 1105, 1603, 2087
MboII GAAGA 7 cut(s) 188, 730, 836, 1286, 1906, 2012, 2050
MfeI CAATTG 1 cut(s) 1111
MflI RGATCY 4 cut(s) 914, 1043, 1105, 2087
MhlI GDGCHC 4 cut(s) 13, 875, 1065, 1659
MlyI GAGTC 2 cut(s) 359, 2008
MmeI TCCRAC 1 cut(s) 815
Mph1103I ATGCAT 2 cut(s) 747, 1923
MslI CAYNNNNRTG 1 cut(s) 1038
MspI CCGG 2 cut(s) 523, 1639
MspR9I CCNGG 9 cut(s) 249, 523, 524, 629, 681, 1244, 1640, 1863, 2099
MunI CAATTG 1 cut(s) 1111
MvaI CCWGG 6 cut(s) 249, 629, 681, 1244, 1863, 2099
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 3 cut(s) 523, 524, 1640
NdeII GATC 6 cut(s) 550, 914, 1043, 1105, 1603, 2087
NlaIV GGNNCC 4 cut(s) 675, 1456, 1610, 1658
NmeAIII GCCGAG 1 cut(s) 1399
NmuCI GTSAC 4 cut(s) 334, 485, 517, 683
NsiI ATGCAT 2 cut(s) 747, 1923
NspI RCATGY 5 cut(s) 745, 795, 1140, 1921, 1971
NspV TTCGAA 1 cut(s) 1591
PaeR7I CTCGAG 1 cut(s) 97
PceI AGGCCT 3 cut(s) 146, 247, 305
PciI ACATGT 1 cut(s) 1136
PfeI GAWTC 2 cut(s) 113, 838
PkrI GCNGC 2 cut(s) 29, 1799
PleI GAGTC 2 cut(s) 359, 2008
PmaCI CACGTG 1 cut(s) 1306
PmlI CACGTG 1 cut(s) 1306
PpsI GAGTC 2 cut(s) 359, 2008
Ppu21I YACGTR 1 cut(s) 1306
PscI ACATGT 1 cut(s) 1136
PshBI ATTAAT 1 cut(s) 1512
Psp124BI GAGCTC 1 cut(s) 875
Psp6I CCWGG 6 cut(s) 247, 627, 679, 1242, 1861, 2097
PspCI CACGTG 1 cut(s) 1306
PspGI CCWGG 6 cut(s) 247, 627, 679, 1242, 1861, 2097
PspN4I GGNNCC 4 cut(s) 675, 1456, 1610, 1658
PspPI GGNCC 5 cut(s) 55, 1455, 1485, 1609, 2095
PsrI GAACNNNNNNTAC 4 cut(s) 615, 647, 1797, 1829
PsuI RGATCY 4 cut(s) 914, 1043, 1105, 2087
RsaI GTAC 2 cut(s) 884, 1145
RsaNI GTAC 2 cut(s) 883, 1144
RseI CAYNNNNRTG 1 cut(s) 1038
SacI GAGCTC 1 cut(s) 875
SatI GCNGC 2 cut(s) 28, 1798
Sau3AI GATC 6 cut(s) 550, 914, 1043, 1105, 1603, 2087
Sau96I GGNCC 5 cut(s) 55, 1455, 1485, 1609, 2095
SchI GAGTC 2 cut(s) 359, 2008
ScrFI CCNGG 9 cut(s) 249, 523, 524, 629, 681, 1244, 1640, 1863, 2099
SduI GDGCHC 4 cut(s) 13, 875, 1065, 1659
SfaNI GCATC 5 cut(s) 122, 135, 202, 278, 1091
Sfr274I CTCGAG 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 1591
SinI GGWCC 1 cut(s) 55
SlaI CTCGAG 1 cut(s) 97
SmaI CCCGGG 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 1038
SmlI CTYRAG 4 cut(s) 97, 409, 1165, 1392
SmoI CTYRAG 4 cut(s) 97, 409, 1165, 1392
SseBI AGGCCT 3 cut(s) 146, 247, 305
SsiI CCGC 1 cut(s) 339
SspMI CTAG 5 cut(s) 180, 243, 1176, 1652, 1662
SstI GAGCTC 1 cut(s) 875
StuI AGGCCT 3 cut(s) 146, 247, 305
StyD4I CCNGG 9 cut(s) 247, 521, 522, 627, 679, 1242, 1638, 1861, 2097
StyI CCWWGG 3 cut(s) 72, 242, 1661
TaaI ACNGT 5 cut(s) 599, 617, 1096, 1706, 1781
TaiI ACGT 3 cut(s) 500, 726, 1308
TaqI TCGA 7 cut(s) 98, 810, 863, 1591, 1986, 2039, 2061
TaqII GACCGA 1 cut(s) 271
TatI WGTACW 1 cut(s) 882
TfiI GAWTC 2 cut(s) 113, 838
TscAI CASTG 2 cut(s) 1359, 1473
TseFI GTSAC 4 cut(s) 334, 485, 517, 683
TseI GCWGC 2 cut(s) 27, 1797
Tsp45I GTSAC 4 cut(s) 334, 485, 517, 683
TspDTI ATGAA 9 cut(s) 35, 339, 696, 788, 1068, 1311, 1683, 1933, 2100
TspGWI ACGGA 3 cut(s) 1111, 1161, 2147
TspMI CCCGGG 1 cut(s) 522
TspRI CASTG 2 cut(s) 1359, 1473
VpaK11BI GGWCC 1 cut(s) 55
VspI ATTAAT 1 cut(s) 1512
XapI RAATTY 1 cut(s) 1207
XceI RCATGY 5 cut(s) 745, 795, 1140, 1921, 1971
XhoI CTCGAG 1 cut(s) 97
XmaI CCCGGG 1 cut(s) 522
XmaJI CCTAGG 2 cut(s) 242, 1661
XmiI GTMKAC 1 cut(s) 2105
XspI CTAG 5 cut(s) 180, 243, 1176, 1652, 1662
Zsp2I ATGCAT 2 cut(s) 747, 1923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.