Rh3CG103500

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000125
Physical Location & Seq
Reverse (-)
8218787 .. 8219425
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG103500.1

Sequence Viewer

Length: 639 bp
ATGGTCACGCATGTTTTTGAATTGGGCACATCTTCATGGCGAGATATACCCTCAGTTCCTCCCTATCATTTATACCATATGCAGTGTGTATATGCTTATGGAGATATGCATTGGATGAGAATAGATATACGTGAAAGAACATGCCATATAGTTTCTTTCGACTTCAAGAAAGAAGAGTTCTTTTCATCTCCCCATCCTAGGTTACAAAGATGGGACCACTCACACTTGTTGTCTAACCTGCATTTAGTTACTCTACTACGAGGATCTCTGGCCACAGTGGATACTTGTTTATCAACTGCTGTGACTATGAATGTTGAGATGTGGGTGTTGAAAGACTATGATAAGAAAATATGGACGAGAGACTACACCATAAGTATTGAAATGGTCGGATTGCGTCCAAATTTTTTGTCCAATGATATCATCTGTGGTGAATGGGAGCATGGCATATTTTTCAAGCATCCGGGAGAGAACGGTAACATCTTTTTCTTGGATCTGAAGCGTCTTTCGATGAAAGTTGTAACATATGGGACTGGAAATAATAGTGACATCTATAGTTATACTAAGAGCTTGATTTCCTTGAAAGATTATGAGAATTCGGTTAGAGTTGGAACAAGCCGATTTTTTGAAGTGGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

212

Amino Acids

24.89

Weight (kDa)

6.4

Isoelectric Point (pI)

22.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 3 - 178 3.1e-11 F-box associated beta propeller domain
FBA_1 PF07734 4 - 191 4e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 246
AclWI GGATC 2 cut(s) 271, 498
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 2 cut(s) 400, 592
AcuI CTGAAG 1 cut(s) 515
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 7 cut(s) 20, 166, 331, 380, 454, 580, 626
AluBI AGCT 1 cut(s) 567
AluI AGCT 1 cut(s) 567
Alw26I GTCTC 1 cut(s) 354
AlwI GGATC 2 cut(s) 271, 498
AoxI GGCC 1 cut(s) 270
ApoI RAATTY 2 cut(s) 400, 592
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AspA2I CCTAGG 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 440
AvaII GGWCC 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 29
BalI TGGCCA 1 cut(s) 272
BccI CCATC 2 cut(s) 201, 204
BciVI GTATCC 1 cut(s) 274
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 550
BfuAI ACCTGC 1 cut(s) 246
BfuI GTATCC 1 cut(s) 274
BlnI CCTAGG 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 466
BpuMI CCSGG 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 535
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 3 cut(s) 120, 193, 457
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 535
BseSI GKGCMC 1 cut(s) 29
BshFI GGCC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 2 cut(s) 227, 541
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 2 cut(s) 227, 541
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 263, 490
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 215
BspMI ACCTGC 1 cut(s) 246
BspPI GGATC 2 cut(s) 271, 498
BsrI ACTGG 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 2 cut(s) 263, 490
BssT1I CCWWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 277, 473
Bst6I CTCTTC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 52, 561
BstF5I GGATG 3 cut(s) 120, 193, 457
BstKTI GATC 2 cut(s) 266, 493
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 2 cut(s) 263, 490
BstNSI RCATGY 2 cut(s) 14, 144
BstSCI CCNGG 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 29
BstX2I RGATCY 2 cut(s) 263, 490
BstYI RGATCY 2 cut(s) 263, 490
BsuI GTATCC 1 cut(s) 274
BsuRI GGCC 1 cut(s) 272
BtsCI GGATG 3 cut(s) 120, 193, 457
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 89, 282
BveI ACCTGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 214
CseI GACGC 2 cut(s) 383, 488
CviAII CATG 4 cut(s) 11, 36, 141, 440
CviJI RGCY 3 cut(s) 272, 567, 615
CviKI_1 RGCY 3 cut(s) 272, 567, 615
DdeI CTNAG 2 cut(s) 52, 561
DpnI GATC 2 cut(s) 265, 492
DpnII GATC 2 cut(s) 263, 490
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 197
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 592
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 4 cut(s) 14, 39, 144, 443
FaqI GGGAC 2 cut(s) 227, 541
FatI CATG 4 cut(s) 10, 35, 140, 439
FauNDI CATATG 2 cut(s) 78, 523
FokI GGATG 3 cut(s) 127, 180, 444
FspBI CTAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 461
HgaI GACGC 2 cut(s) 383, 488
Hin1II CATG 4 cut(s) 14, 39, 144, 443
HpaII CCGG 1 cut(s) 461
HphI GGTGA 1 cut(s) 440
Hpy188I TCNGA 2 cut(s) 389, 495
Hpy188III TCNNGA 1 cut(s) 166
HpyCH4III ACNGT 2 cut(s) 277, 473
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 82, 109, 241
HpyF3I CTNAG 2 cut(s) 52, 561
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 4 cut(s) 14, 39, 144, 443
Kzo9I GATC 2 cut(s) 263, 490
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 4 cut(s) 251, 254, 474, 516
LweI GCATC 1 cut(s) 466
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 7 cut(s) 4, 201, 247, 301, 473, 517, 542
MalI GATC 2 cut(s) 265, 492
MboI GATC 2 cut(s) 263, 490
MboII GAAGA 2 cut(s) 24, 185
MflI RGATCY 2 cut(s) 263, 490
MhlI GDGCHC 1 cut(s) 29
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 3 cut(s) 20, 400, 592
MluNI TGGCCA 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 367, 586
MnlI CCTC 3 cut(s) 61, 69, 254
Mox20I TGGCCA 1 cut(s) 272
Mph1103I ATGCAT 1 cut(s) 111
MscI TGGCCA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 34
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 462
NciI CCSGG 1 cut(s) 462
NdeI CATATG 2 cut(s) 78, 523
NdeII GATC 2 cut(s) 263, 490
NlaIII CATG 4 cut(s) 14, 39, 144, 443
NlaIV GGNNCC 1 cut(s) 215
NmuCI GTSAC 3 cut(s) 4, 301, 542
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 2 cut(s) 14, 144
PfoI TCCNGGA 1 cut(s) 460
Ppu21I YACGTR 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 2 cut(s) 263, 490
RseI CAYNNNNRTG 1 cut(s) 34
Sau3AI GATC 2 cut(s) 263, 490
Sau96I GGNCC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 1 cut(s) 29
SetI ASST 4 cut(s) 133, 203, 240, 569
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 550
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 34
Sse9I AATT 3 cut(s) 20, 400, 592
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 277, 473
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 159, 506
TasI AATT 3 cut(s) 20, 400, 592
TscAI CASTG 2 cut(s) 89, 282
TseFI GTSAC 3 cut(s) 4, 301, 542
Tsp45I GTSAC 3 cut(s) 4, 301, 542
TspDTI ATGAA 4 cut(s) 24, 174, 323, 524
TspRI CASTG 2 cut(s) 89, 282
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 400, 592
XceI RCATGY 2 cut(s) 14, 144
XmaJI CCTAGG 1 cut(s) 197
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.