Rroxscaffold_7G00176150

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000125
Physical Location & Seq
Reverse (-)
15637773 .. 15651139
13367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176150.1

Sequence Viewer

Length: 807 bp
ATGTCCTTCGGCGGAGAAGCTGTCGTGTATCCCAAGTGCTTGTACTCGGCACAAGTGTATGGCGACAGTACCCACGATTCCACTGTTCATGGTTTAAATTGTGCAAAGAGTATATGTGCATATGGAGATATGCATTGGTTGTTTCATGGTTATACTAGAGAAGGAGTTCAAGAAAGAAGAGTTCTTTTGGATTCCCAATCCCTACACATTACCAGCTATGAGCTGGCGATTACACATGATTACCTTAAGAGGATCTATGGCCATCGTGGATACTTCATCGGTACGAATATTGAGATATGGGTGATGAAAGATTACAATAAAAAACAGTGGATGCTCGATTATTCCATCAATATCCACATGCTTGAATTAGATCCTCAATTTGAGTTTTTGCGAGCTGTTTGTTGTGAGTGGGAGCATGGCATACTTTTTATAGATCAACCAGCCACATTAACATTGTTTTTGGATCTAAGACCACCTGTTGTTAGGAACAATCTTTTCAAATGTCCAATTAAGGGGTGTGATTTGGAGTGTAGGCGAATAATGAGTCTTAATGGGAGCTTGATTTCCCTAAAAAGTTATGCAAATTTGGTCGAAGCGAAGAACCAGCTACTTACAGCAATTGGACCGAGGGAGAAGCAAGTGCGAAGAATTTCTTTTATCCGACGAGGCATTACTCTATTAAGGAAGAACATCGAGAGCCCTACTAAGACCCTGAACAGAGGTATTGCTGAGTTCATTGTGATGGCTGCTAATACCGAGCCGCTTGAGATTCTTCTTCATCTTCCCCTCTTGGTGAAGATAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

268

Amino Acids

30.91

Weight (kDa)

8.72

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 12, 761
AclWI GGATC 3 cut(s) 260, 365, 471
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 2 cut(s) 583, 648
AfaI GTAC 3 cut(s) 44, 70, 283
AfiI CCNNNNNNNGG 1 cut(s) 512
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 3 cut(s) 170, 365, 499
AluBI AGCT 6 cut(s) 20, 216, 223, 395, 558, 607
AluI AGCT 6 cut(s) 20, 216, 223, 395, 558, 607
AlwI GGATC 3 cut(s) 260, 365, 471
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 746
ApoI RAATTY 2 cut(s) 583, 648
ArsI GACNNNNNNTTYG 2 cut(s) 529, 561
Asp700I GAANNNNTTC 2 cut(s) 165, 649
AspS9I GGNCC 1 cut(s) 623
AsuHPI GGTGA 2 cut(s) 313, 805
AvaII GGWCC 1 cut(s) 623
BalI TGGCCA 1 cut(s) 261
BanII GRGCYC 1 cut(s) 701
BbvI GCAGC 1 cut(s) 733
BccI CCATC 3 cut(s) 270, 353, 736
BciVI GTATCC 2 cut(s) 39, 263
BfaI CTAG 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 245
BfuI GTATCC 2 cut(s) 39, 263
BisI GCNGC 2 cut(s) 747, 761
BlsI GCNGC 2 cut(s) 748, 762
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 623
BmsI GCATC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 785
BsaJI CCNNGG 1 cut(s) 626
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 512
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMII CTCAG 1 cut(s) 720
BseXI GCAGC 1 cut(s) 733
BshFI GGCC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 512
BsnI GGCC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 701
Bsp143I GATC 4 cut(s) 252, 370, 433, 463
BspACI CCGC 2 cut(s) 12, 761
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 721
BspPI GGATC 3 cut(s) 260, 365, 471
BspTI CTTAAG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 626
BssMI GATC 4 cut(s) 252, 370, 433, 463
Bst4CI ACNGT 3 cut(s) 68, 85, 327
Bst6I CTCTTC 1 cut(s) 172
BstAFI CTTAAG 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 225, 393
BstDEI CTNAG 3 cut(s) 467, 705, 729
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 4 cut(s) 255, 373, 436, 466
BstMBI GATC 4 cut(s) 252, 370, 433, 463
BstNSI RCATGY 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 733
BstX2I RGATCY 3 cut(s) 252, 370, 463
BstYI RGATCY 3 cut(s) 252, 370, 463
BsuI GTATCC 2 cut(s) 39, 263
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 81, 332
Cac8I GCNNGC 2 cut(s) 225, 393
Cfr13I GGNCC 1 cut(s) 623
Csp6I GTAC 3 cut(s) 43, 69, 282
CviAII CATG 5 cut(s) 89, 146, 236, 358, 416
CviQI GTAC 3 cut(s) 43, 69, 282
DdeI CTNAG 3 cut(s) 467, 705, 729
DpnI GATC 4 cut(s) 254, 372, 435, 465
DpnII GATC 4 cut(s) 252, 370, 433, 463
DraI TTTAAA 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
EciI GGCGGA 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 701
Eco47I GGWCC 1 cut(s) 623
EcoT22I ATGCAT 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 701
FaeI CATG 5 cut(s) 92, 149, 239, 361, 419
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FatI CATG 5 cut(s) 88, 145, 235, 357, 415
FauNDI CATATG 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 747, 761
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 2 cut(s) 747, 761
FspBI CTAG 1 cut(s) 156
GluI GCNGC 2 cut(s) 747, 761
HaeIII GGCC 1 cut(s) 261
Hin1II CATG 5 cut(s) 92, 149, 239, 361, 419
HinfI GANTC 4 cut(s) 77, 191, 544, 769
HphI GGTGA 2 cut(s) 313, 805
Hpy188I TCNGA 1 cut(s) 662
Hpy188III TCNNGA 2 cut(s) 170, 694
Hpy99I CGWCG 1 cut(s) 666
HpyAV CCTTC 2 cut(s) 16, 155
HpyCH4III ACNGT 3 cut(s) 68, 85, 327
HpyCH4V TGCA 4 cut(s) 104, 119, 133, 581
HpyF3I CTNAG 3 cut(s) 467, 705, 729
Hsp92II CATG 5 cut(s) 92, 149, 239, 361, 419
Kzo9I GATC 4 cut(s) 252, 370, 433, 463
LmnI GCTCC 2 cut(s) 412, 555
LpnPI CCDG 6 cut(s) 209, 226, 453, 489, 617, 725
Lsp1109I GCAGC 1 cut(s) 733
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 156
MalI GATC 4 cut(s) 254, 372, 435, 465
MboI GATC 4 cut(s) 252, 370, 433, 463
MboII GAAGA 7 cut(s) 189, 610, 657, 697, 764, 767, 773
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 3 cut(s) 252, 370, 463
MhlI GDGCHC 1 cut(s) 701
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 7 cut(s) 97, 365, 377, 507, 583, 618, 648
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 685
MnlI CCTC 6 cut(s) 243, 384, 621, 659, 713, 797
Mox20I TGGCCA 1 cut(s) 261
Mph1103I ATGCAT 1 cut(s) 135
MroXI GAANNNNTTC 2 cut(s) 165, 649
MscI TGGCCA 1 cut(s) 261
MseI TTAA 6 cut(s) 95, 246, 449, 510, 549, 680
MslI CAYNNNNRTG 1 cut(s) 740
Msp20I TGGCCA 1 cut(s) 261
MspCI CTTAAG 1 cut(s) 245
MunI CAATTG 1 cut(s) 618
NdeI CATATG 1 cut(s) 121
NdeII GATC 4 cut(s) 252, 370, 433, 463
NlaIII CATG 5 cut(s) 92, 149, 239, 361, 419
NmeAIII GCCGAG 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 135
NspI RCATGY 1 cut(s) 361
PdmI GAANNNNTTC 2 cut(s) 165, 649
PfeI GAWTC 3 cut(s) 77, 191, 769
PkrI GCNGC 2 cut(s) 748, 762
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
PspPI GGNCC 1 cut(s) 623
PsuI RGATCY 3 cut(s) 252, 370, 463
RsaI GTAC 3 cut(s) 44, 70, 283
RsaNI GTAC 3 cut(s) 43, 69, 282
RseI CAYNNNNRTG 1 cut(s) 740
SaqAI TTAA 6 cut(s) 95, 246, 449, 510, 549, 680
SatI GCNGC 2 cut(s) 747, 761
Sau3AI GATC 4 cut(s) 252, 370, 433, 463
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 1 cut(s) 553
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 2 cut(s) 245, 764
SmoI CTYRAG 2 cut(s) 245, 764
Sse9I AATT 7 cut(s) 97, 365, 377, 507, 583, 618, 648
SsiI CCGC 2 cut(s) 12, 761
SspI AATATT 1 cut(s) 289
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 3 cut(s) 68, 85, 327
TaqI TCGA 3 cut(s) 336, 591, 693
TaqII GACCGA 1 cut(s) 640
TasI AATT 7 cut(s) 97, 365, 377, 507, 583, 618, 648
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 763
TfiI GAWTC 3 cut(s) 77, 191, 769
Tru1I TTAA 6 cut(s) 95, 246, 449, 510, 549, 680
Tru9I TTAA 6 cut(s) 95, 246, 449, 510, 549, 680
TscAI CASTG 2 cut(s) 88, 332
TseI GCWGC 1 cut(s) 746
TspDTI ATGAA 6 cut(s) 77, 134, 265, 320, 724, 767
TspRI CASTG 2 cut(s) 88, 332
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 623
XapI RAATTY 2 cut(s) 583, 648
XceI RCATGY 1 cut(s) 361
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmnI GAANNNNTTC 2 cut(s) 165, 649
XspI CTAG 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.