Rh6BG337400

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
57038201 .. 57038779
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG337400.1

Sequence Viewer

Length: 579 bp
ATGTCCTTCAGCGGCGAACTGTCGTGTATCCCAAGTGCTTGTACTCGGCACAAGTGTACGGCGACAGGTACCCTCAGTTCCACCTGTTTGTGGCTTAAAATGCTCAAAGAGTACACATGTGCATATGGAGATATGCATTGGTTGTTTAATGGTTATACTAGCGAAGGAGTTCAAGGTAGAACCCATATACTTTCCTTTGACTTCAAGAAAGAAGAGTTCCTTTGGATTCCCAATCCCTACACATTACCAGCTATGAGCTGGCAGTTACACATGATTACCTTAAGAGGATCTATGGCCATTGTGGATACTTCATCAGGTACGAATATTGAGATATGGGTGATGAAAGATTACAATAAAAAACAGTGGATGCTCGATTATTCCATCAATATCCACATGCTTGAATTAGATCCTCAATTTGAGTTTTTGCGAGCTGTTTGTTGTGAGTGGGAGCATGGCATACTTTTCATAGATCAACCAGCCACATTAACATTGTTTTTGGATCTAAGACCACCTGTTGTTAGGAAGATAATCTTTTCAAATGTCCAATTAAGGGGTGTGATTTGGAGTGAAGGCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

22.23

Weight (kDa)

5.86

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 39 - 125 2.9e-09 F-box associated beta propeller domain
FBA_1 PF07734 43 - 167 1.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 68
AciI CCGC 1 cut(s) 12
AclWI GGATC 3 cut(s) 295, 401, 507
AcoI YGGCCR 1 cut(s) 294
AfaI GTAC 5 cut(s) 43, 58, 70, 113, 319
AfiI CCNNNNNNNGG 2 cut(s) 90, 550
AflII CTTAAG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 4 cut(s) 173, 205, 401, 537
AluBI AGCT 3 cut(s) 251, 258, 431
AluI AGCT 3 cut(s) 251, 258, 431
AlwI GGATC 3 cut(s) 295, 401, 507
AoxI GGCC 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 168
Asp718I GGTACC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 349
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 68
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 75
BciVI GTATCC 2 cut(s) 38, 298
BfaI CTAG 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 280
BfuI GTATCC 2 cut(s) 38, 298
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 550
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 2 cut(s) 90, 550
BseMII CTCAG 1 cut(s) 88
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 90, 550
BsnI GGCC 1 cut(s) 296
Bsp143I GATC 4 cut(s) 287, 406, 469, 499
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 3 cut(s) 295, 401, 507
BspT107I GGYRCC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 280
BssMI GATC 4 cut(s) 287, 406, 469, 499
Bst4CI ACNGT 2 cut(s) 21, 363
Bst6I CTCTTC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 280
BstC8I GCNNGC 2 cut(s) 260, 429
BstDEI CTNAG 2 cut(s) 74, 503
BstF5I GGATG 1 cut(s) 372
BstKTI GATC 4 cut(s) 290, 409, 472, 502
BstMBI GATC 4 cut(s) 287, 406, 469, 499
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNSI RCATGY 2 cut(s) 120, 397
BstX2I RGATCY 3 cut(s) 287, 406, 499
BstYI RGATCY 3 cut(s) 287, 406, 499
BsuI GTATCC 2 cut(s) 38, 298
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 260, 429
Csp6I GTAC 5 cut(s) 42, 57, 69, 112, 318
CviAII CATG 4 cut(s) 117, 271, 394, 452
CviJI RGCY 6 cut(s) 94, 251, 258, 296, 431, 479
CviKI_1 RGCY 6 cut(s) 94, 251, 258, 296, 431, 479
CviQI GTAC 5 cut(s) 42, 57, 69, 112, 318
DdeI CTNAG 2 cut(s) 74, 503
DpnI GATC 4 cut(s) 289, 408, 471, 501
DpnII GATC 4 cut(s) 287, 406, 469, 499
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 138
FaeI CATG 4 cut(s) 120, 274, 397, 455
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 515, 547
FatI CATG 4 cut(s) 116, 270, 393, 451
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 1 cut(s) 379
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 296
Hin1II CATG 4 cut(s) 120, 274, 397, 455
HinfI GANTC 1 cut(s) 226
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 57, 114
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 2 cut(s) 57, 114
HpyAV CCTTC 3 cut(s) 16, 158, 563
HpyCH4III ACNGT 2 cut(s) 21, 363
HpyCH4V TGCA 2 cut(s) 122, 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 74, 503
Hsp92II CATG 4 cut(s) 120, 274, 397, 455
KpnI GGTACC 1 cut(s) 72
Kzo9I GATC 4 cut(s) 287, 406, 469, 499
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 7 cut(s) 51, 97, 244, 261, 300, 489, 525
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 264
MalI GATC 4 cut(s) 289, 408, 471, 501
MboI GATC 4 cut(s) 287, 406, 469, 499
MboII GAAGA 2 cut(s) 224, 535
MflI RGATCY 3 cut(s) 287, 406, 499
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 3 cut(s) 401, 413, 545
MluNI TGGCCA 1 cut(s) 296
MnlI CCTC 3 cut(s) 83, 278, 420
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 168
MscI TGGCCA 1 cut(s) 296
MseI TTAA 5 cut(s) 96, 147, 281, 485, 548
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 12
MspCI CTTAAG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeI CATATG 1 cut(s) 124
NdeII GATC 4 cut(s) 287, 406, 469, 499
NlaIII CATG 4 cut(s) 120, 274, 397, 455
NlaIV GGNNCC 1 cut(s) 70
NmeAIII GCCGAG 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 138
NspI RCATGY 2 cut(s) 120, 397
PciI ACATGT 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 1 cut(s) 14
PscI ACATGT 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 70
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
PsuI RGATCY 3 cut(s) 287, 406, 499
RsaI GTAC 5 cut(s) 43, 58, 70, 113, 319
RsaNI GTAC 5 cut(s) 42, 57, 69, 112, 318
SaqAI TTAA 5 cut(s) 96, 147, 281, 485, 548
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 4 cut(s) 287, 406, 469, 499
SetI ASST 9 cut(s) 70, 86, 178, 253, 260, 281, 319, 433, 514
SfaNI GCATC 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 3 cut(s) 401, 413, 545
SsiI CCGC 1 cut(s) 12
SspI AATATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 21, 363
TaqI TCGA 1 cut(s) 372
TasI AATT 3 cut(s) 401, 413, 545
TatI WGTACW 2 cut(s) 41, 111
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 5 cut(s) 96, 147, 281, 485, 548
Tru9I TTAA 5 cut(s) 96, 147, 281, 485, 548
TscAI CASTG 1 cut(s) 368
TspDTI ATGAA 3 cut(s) 300, 356, 454
TspRI CASTG 1 cut(s) 368
Vha464I CTTAAG 1 cut(s) 280
XceI RCATGY 2 cut(s) 120, 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.