RLG00000021626

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
76847008 .. 76847502
495 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021626

Sequence Viewer

Length: 378 bp
ATGGGTGTACAAAGAAAAGAAGCACTGGGCAAAAGATTACAGCATGGATTTAGGTTATTCCGGATCTGGTGGTTCTTAGGCACTTGGGAGCATGGCATATACATTATAGTTTTACATGCTAACATCCTTCCAGTGTACTCTGATGTGGTCTATTATGATCTAAGATGTGGTAACATGAGAGGTGTACCCGATGAATATTGTCAAAAGCAGCTGATCCATATGTTTAGTTATTCCGGAAGCCTGATTTCTCTGAAAAAATATGATAACTCGAGAATGAATAACAAGAAAGAGAAGAATTATCTTGATGCTGGAAACTCTGAATTTCCTGAATATCTTTCTAAGCTGAAAGTACCTAGGGTCAAGTCACTTGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.83

Weight (kDa)

9.44

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 60, 233
AclWI GGATC 2 cut(s) 71, 208
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 4 cut(s) 9, 137, 186, 351
AluBI AGCT 2 cut(s) 211, 343
AluI AGCT 2 cut(s) 211, 343
AlwI GGATC 2 cut(s) 71, 208
Ama87I CYCGRG 1 cut(s) 268
Aor13HI TCCGGA 2 cut(s) 60, 233
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 320
AspA2I CCTAGG 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 268
AvrII CCTAGG 1 cut(s) 353
BbvI GCAGC 1 cut(s) 220
BfaI CTAG 1 cut(s) 354
BisI GCNGC 1 cut(s) 209
BlnI CCTAGG 1 cut(s) 353
BlsI GCNGC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 2 cut(s) 60, 233
Bse1I ACTGG 2 cut(s) 30, 131
BseAI TCCGGA 2 cut(s) 60, 233
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 30, 131
BseXI GCAGC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 2 cut(s) 61, 234
BsoBI CYCGRG 1 cut(s) 268
Bsp13I TCCGGA 2 cut(s) 60, 233
Bsp1407I TGTACA 1 cut(s) 7
Bsp143I GATC 3 cut(s) 63, 157, 213
BspEI TCCGGA 2 cut(s) 60, 233
BspPI GGATC 2 cut(s) 71, 208
BsrGI TGTACA 1 cut(s) 7
BsrI ACTGG 2 cut(s) 30, 131
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 63, 157, 213
BssT1I CCWWGG 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 76, 161, 339
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 3 cut(s) 66, 160, 216
BstMBI GATC 3 cut(s) 63, 157, 213
BstNSI RCATGY 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BtsCI GGATG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 23, 138
Csp6I GTAC 4 cut(s) 8, 136, 185, 350
CviAII CATG 4 cut(s) 44, 92, 116, 175
CviJI RGCY 3 cut(s) 211, 240, 343
CviKI_1 RGCY 3 cut(s) 211, 240, 343
CviQI GTAC 4 cut(s) 8, 136, 185, 350
DdeI CTNAG 3 cut(s) 76, 161, 339
DpnI GATC 3 cut(s) 65, 159, 215
DpnII GATC 3 cut(s) 63, 157, 213
Eco130I CCWWGG 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 4 cut(s) 47, 95, 119, 178
FatI CATG 4 cut(s) 43, 91, 115, 174
FauNDI CATATG 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 354
GluI GCNGC 1 cut(s) 209
HapII CCGG 2 cut(s) 61, 234
Hin1II CATG 4 cut(s) 47, 95, 119, 178
HpaII CCGG 2 cut(s) 61, 234
Hpy166II GTNNAC 3 cut(s) 8, 136, 185
Hpy188I TCNGA 3 cut(s) 142, 252, 319
Hpy188III TCNNGA 5 cut(s) 61, 234, 270, 302, 326
Hpy8I GTNNAC 3 cut(s) 8, 136, 185
HpyAV CCTTC 1 cut(s) 137
HpyF3I CTNAG 3 cut(s) 76, 161, 339
Hsp92II CATG 4 cut(s) 47, 95, 119, 178
Kpn2I TCCGGA 2 cut(s) 60, 233
Kzo9I GATC 3 cut(s) 63, 157, 213
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 11, 52, 74, 144, 247, 254, 294, 339
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 170, 363
MalI GATC 3 cut(s) 65, 159, 215
MboI GATC 3 cut(s) 63, 157, 213
MboII GAAGA 1 cut(s) 304
MflI RGATCY 1 cut(s) 63
MluCI AATT 2 cut(s) 295, 320
MnlI CCTC 1 cut(s) 173
MroI TCCGGA 2 cut(s) 60, 233
MseI TTAA 1 cut(s) 376
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 2 cut(s) 61, 234
NdeI CATATG 1 cut(s) 219
NdeII GATC 3 cut(s) 63, 157, 213
NlaIII CATG 4 cut(s) 47, 95, 119, 178
NmuCI GTSAC 1 cut(s) 363
NspI RCATGY 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 4 cut(s) 9, 137, 186, 351
RsaNI GTAC 4 cut(s) 8, 136, 185, 350
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 3 cut(s) 63, 157, 213
SetI ASST 5 cut(s) 56, 184, 213, 345, 355
SfaNI GCATC 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 268
SlaI CTCGAG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 2 cut(s) 295, 320
SspI AATATT 1 cut(s) 197
SspMI CTAG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 353
TaqI TCGA 1 cut(s) 269
TasI AATT 2 cut(s) 295, 320
TatI WGTACW 2 cut(s) 7, 135
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TscAI CASTG 2 cut(s) 30, 138
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 2 cut(s) 207, 290
TspRI CASTG 2 cut(s) 30, 138
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 268
XmaJI CCTAGG 1 cut(s) 353
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.