RLG00000025070

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000125
Physical Location & Seq
Forward (+)
41788685 .. 41789851
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025070

Sequence Viewer

Length: 912 bp
ATGTCTTTTGCTGCGTTGTTTCCCTCTGAGCGTGGTGGAGTGATAGCAGACTTGCAACCGGTCAAATTTGATGACAGTGTCTTGACAACAAGAGGAAAATATGCAATTAATGTCTCCACATCACGCCGGTCCGGTTGCCCAACATACATGGTAGATTTTGTTTTCTACAACTTGACTTGCTTCAGAAATAGAAACAATCGTGGACAAGGAGTTTGCTTCTTAGTCGATCTTTGTAGGAGAGAAGTTCTAAGGCTCCCTAAGAATGATATTACTAAGGATTCAAAGTCTCCAGTATTCTGTGACTGTATTACCAATACTCTCAAGATTCTTCGTGTTACTAAAGTTAATGCAGCGGACTGCATGGTAGCTCAAGTTCTTGTACTAGGCAAAAGCTCATGGCGACAAATATCCTCAGCTCCTCTTTGTTATTTGTCCGCTATTTGTAAATTATTTTCCCCAAAGAATGCATGTGCATATGGAGACATGCATTGGTTGGGTGGTGATGCCATGGTAAAAGAAAGTGAAGCTATAATTTCTTTTGACTTCAAGAAAGAAGAGTTTTGTTGGAGGCCTCATCCCAGATTACGAAGCTCAAAGGAGTACACTTGCTTGTACATGCACTTGCACTTGCTTACTCTTAAAGGATCTCTGGCCCTAGTGGATACTTCATCATCAGAAGTAAGATGTGAGAGTGGGATCCCTACCAAAATCTTGAGCTACACACGGAGCTTTATATCCTTAAAAGATTATGACATTTTGGTTGAAGCTGAACGTGGCACTGGAAGTCTTAAAAGTTATGTTAATTTGATGGAAGAAGCACAAGGATTTAGCTTATGTGAGAGGCACGTGCTGCGCGGAGTTTCTTTAATCCAAGAAGGTAACAATGACATAGCACACCAAGCTTCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

304

Amino Acids

33.96

Weight (kDa)

8.7

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 74 - 223 4.5e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 855
AciI CCGC 3 cut(s) 353, 435, 855
AclWI GGATC 3 cut(s) 652, 691, 704
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 166, 888
AcvI CACGTG 1 cut(s) 847
AfaI GTAC 3 cut(s) 381, 602, 614
AgeI ACCGGT 1 cut(s) 58
AgsI TTSAA 3 cut(s) 282, 547, 764
Alw26I GTCTC 3 cut(s) 118, 291, 474
AlwI GGATC 3 cut(s) 652, 691, 704
AoxI GGCC 2 cut(s) 569, 651
ApeKI GCWGC 3 cut(s) 11, 350, 850
ApoI RAATTY 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AseI ATTAAT 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 58
AspLEI GCGC 1 cut(s) 855
AspS9I GGNCC 2 cut(s) 129, 652
AsuHPI GGTGA 1 cut(s) 512
AvaII GGWCC 1 cut(s) 129
BamHI GGATCC 1 cut(s) 696
BbrPI CACGTG 1 cut(s) 847
BbvCI CCTCAGC 1 cut(s) 412
BbvI GCAGC 2 cut(s) 362, 837
BccI CCATC 1 cut(s) 802
BciVI GTATCC 1 cut(s) 655
BcoDI GTCTC 3 cut(s) 118, 291, 474
BfaI CTAG 3 cut(s) 383, 656, 910
BfuI GTATCC 1 cut(s) 655
BisI GCNGC 3 cut(s) 12, 351, 851
BlsI GCNGC 3 cut(s) 13, 352, 852
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 129, 652
BmiI GGNNCC 2 cut(s) 254, 698
BmsI GCATC 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 412
BpuEI CTTGAG 3 cut(s) 305, 354, 733
BsaAI YACGTR 1 cut(s) 847
BsaJI CCNNGG 1 cut(s) 507
BsaWI WCCGGW 2 cut(s) 58, 131
Bse118I RCCGGY 2 cut(s) 58, 126
Bse1I ACTGG 2 cut(s) 290, 784
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 1 cut(s) 574
BseMII CTCAG 2 cut(s) 18, 426
BseNI ACTGG 2 cut(s) 290, 784
BseRI GAGGAG 1 cut(s) 408
BseXI GCAGC 2 cut(s) 362, 837
Bsh1236I CGCG 1 cut(s) 855
BshFI GGCC 2 cut(s) 571, 653
BshTI ACCGGT 1 cut(s) 58
BsiSI CCGG 3 cut(s) 59, 127, 132
BsmAI GTCTC 3 cut(s) 118, 291, 474
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 2 cut(s) 571, 653
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 3 cut(s) 226, 644, 696
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 3 cut(s) 353, 435, 855
BspANI GGCC 2 cut(s) 571, 653
BspCNI CTCAG 2 cut(s) 19, 425
BspFNI CGCG 1 cut(s) 855
BspLI GGNNCC 2 cut(s) 254, 698
BspPI GGATC 3 cut(s) 652, 691, 704
BsrFI RCCGGY 2 cut(s) 58, 126
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 2 cut(s) 290, 784
BssAI RCCGGY 2 cut(s) 58, 126
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 3 cut(s) 226, 644, 696
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 2 cut(s) 77, 305
Bst6I CTCTTC 1 cut(s) 549
BstAPI GCANNNNNTGC 1 cut(s) 850
BstAUI TGTACA 1 cut(s) 612
BstBAI YACGTR 1 cut(s) 847
BstDEI CTNAG 6 cut(s) 27, 220, 248, 258, 273, 412
BstDSI CCRYGG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 1 cut(s) 855
BstHHI GCGC 1 cut(s) 855
BstKTI GATC 3 cut(s) 229, 647, 699
BstMAI GTCTC 3 cut(s) 118, 291, 474
BstMBI GATC 3 cut(s) 226, 644, 696
BstMWI GCNNNNNNNGC 2 cut(s) 850, 899
BstNSI RCATGY 3 cut(s) 471, 487, 619
BstUI CGCG 1 cut(s) 855
BstV1I GCAGC 2 cut(s) 362, 837
BstX2I RGATCY 2 cut(s) 644, 696
BstYI RGATCY 2 cut(s) 644, 696
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 2 cut(s) 571, 653
BtgI CCRYGG 1 cut(s) 507
BtsCI GGATG 1 cut(s) 574
BtsIMutI CAGTG 2 cut(s) 82, 777
CfoI GCGC 1 cut(s) 855
Cfr10I RCCGGY 2 cut(s) 58, 126
Cfr13I GGNCC 2 cut(s) 129, 652
CpoI CGGWCCG 1 cut(s) 129
Csp6I GTAC 3 cut(s) 380, 601, 613
CspAI ACCGGT 1 cut(s) 58
CspI CGGWCCG 1 cut(s) 129
CviAII CATG 7 cut(s) 148, 361, 396, 468, 484, 508, 616
CviQI GTAC 3 cut(s) 380, 601, 613
DdeI CTNAG 6 cut(s) 27, 220, 248, 258, 273, 412
DpnI GATC 3 cut(s) 228, 646, 698
DpnII GATC 3 cut(s) 226, 644, 696
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 507
Eco147I AGGCCT 1 cut(s) 571
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 166, 888
Eco72I CACGTG 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 507
EcoT22I ATGCAT 2 cut(s) 469, 489
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 7 cut(s) 151, 364, 399, 471, 487, 511, 619
FatI CATG 7 cut(s) 147, 360, 395, 467, 483, 507, 615
FauNDI CATATG 1 cut(s) 475
Fnu4HI GCNGC 3 cut(s) 12, 351, 851
FokI GGATG 1 cut(s) 561
Fsp4HI GCNGC 3 cut(s) 12, 351, 851
FspBI CTAG 3 cut(s) 383, 656, 910
GlaI GCGC 1 cut(s) 854
GluI GCNGC 3 cut(s) 12, 351, 851
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 571, 653
HapII CCGG 3 cut(s) 59, 127, 132
HhaI GCGC 1 cut(s) 855
Hin1II CATG 7 cut(s) 151, 364, 399, 471, 487, 511, 619
Hin6I GCGC 1 cut(s) 853
HinP1I GCGC 1 cut(s) 853
HindIII AAGCTT 1 cut(s) 900
HinfI GANTC 2 cut(s) 278, 325
HpaII CCGG 3 cut(s) 59, 127, 132
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 2 cut(s) 203, 603
Hpy188I TCNGA 3 cut(s) 28, 185, 676
Hpy188III TCNNGA 4 cut(s) 82, 322, 547, 712
Hpy8I GTNNAC 2 cut(s) 203, 603
HpyAV CCTTC 1 cut(s) 869
HpyCH4III ACNGT 2 cut(s) 77, 305
HpyCH4IV ACGT 2 cut(s) 772, 846
HpyCH4V TGCA 9 cut(s) 55, 104, 350, 360, 467, 473, 487, 619, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 850, 899
HpyF3I CTNAG 6 cut(s) 27, 220, 248, 258, 273, 412
HpySE526I ACGT 2 cut(s) 772, 846
Hsp92II CATG 7 cut(s) 151, 364, 399, 471, 487, 511, 619
HspAI GCGC 1 cut(s) 853
Kzo9I GATC 3 cut(s) 226, 644, 696
LmnI GCTCC 3 cut(s) 258, 421, 726
LpnPI CCDG 7 cut(s) 72, 140, 145, 303, 592, 635, 765
Lsp1109I GCAGC 2 cut(s) 362, 837
LweI GCATC 1 cut(s) 493
MaeI CTAG 3 cut(s) 383, 656, 910
MaeII ACGT 2 cut(s) 772, 846
MaeIII GTNAC 3 cut(s) 299, 334, 878
MalI GATC 3 cut(s) 228, 646, 698
MboI GATC 3 cut(s) 226, 644, 696
MboII GAAGA 3 cut(s) 320, 566, 824
MflI RGATCY 2 cut(s) 644, 696
MluCI AATT 5 cut(s) 65, 105, 446, 531, 802
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 7 cut(s) 34, 86, 421, 429, 561, 582, 834
Mph1103I ATGCAT 2 cut(s) 469, 489
MseI TTAA 7 cut(s) 108, 345, 639, 740, 789, 801, 866
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 3 cut(s) 59, 127, 132
Mva1269I GAATGC 1 cut(s) 469
MvnI CGCG 1 cut(s) 855
MwoI GCNNNNNNNGC 2 cut(s) 850, 899
NcoI CCATGG 1 cut(s) 507
NdeI CATATG 1 cut(s) 475
NdeII GATC 3 cut(s) 226, 644, 696
NlaIII CATG 7 cut(s) 151, 364, 399, 471, 487, 511, 619
NlaIV GGNNCC 2 cut(s) 254, 698
NmuCI GTSAC 1 cut(s) 299
NsiI ATGCAT 2 cut(s) 469, 489
NspI RCATGY 3 cut(s) 471, 487, 619
PceI AGGCCT 1 cut(s) 571
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 278, 325
PflFI GACNNNGTC 1 cut(s) 77
PinAI ACCGGT 1 cut(s) 58
PkrI GCNGC 3 cut(s) 13, 352, 852
PmaCI CACGTG 1 cut(s) 847
PmlI CACGTG 1 cut(s) 847
Ppu21I YACGTR 1 cut(s) 847
PshBI ATTAAT 1 cut(s) 108
PspCI CACGTG 1 cut(s) 847
PspN4I GGNNCC 2 cut(s) 254, 698
PspPI GGNCC 2 cut(s) 129, 652
PsrI GAACNNNNNNTAC 2 cut(s) 357, 389
PsuI RGATCY 2 cut(s) 644, 696
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 3 cut(s) 381, 602, 614
RsaNI GTAC 3 cut(s) 380, 601, 613
Rsr2I CGGWCCG 1 cut(s) 129
RsrII CGGWCCG 1 cut(s) 129
SaqAI TTAA 7 cut(s) 108, 345, 639, 740, 789, 801, 866
SatI GCNGC 3 cut(s) 12, 351, 851
Sau3AI GATC 3 cut(s) 226, 644, 696
Sau96I GGNCC 2 cut(s) 129, 652
SfaNI GCATC 1 cut(s) 493
SinI GGWCC 1 cut(s) 129
SmlI CTYRAG 3 cut(s) 320, 369, 712
SmoI CTYRAG 3 cut(s) 320, 369, 712
Sse9I AATT 5 cut(s) 65, 105, 446, 531, 802
SseBI AGGCCT 1 cut(s) 571
SsiI CCGC 3 cut(s) 353, 435, 855
SspMI CTAG 3 cut(s) 383, 656, 910
StuI AGGCCT 1 cut(s) 571
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 77, 305
TaiI ACGT 2 cut(s) 775, 849
TaqI TCGA 1 cut(s) 225
TasI AATT 5 cut(s) 65, 105, 446, 531, 802
TatI WGTACW 3 cut(s) 379, 600, 612
TfiI GAWTC 2 cut(s) 278, 325
Tru1I TTAA 7 cut(s) 108, 345, 639, 740, 789, 801, 866
Tru9I TTAA 7 cut(s) 108, 345, 639, 740, 789, 801, 866
TscAI CASTG 2 cut(s) 82, 784
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 3 cut(s) 11, 350, 850
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 657
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 2 cut(s) 82, 784
Tth111I GACNNNGTC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 129
VspI ATTAAT 1 cut(s) 108
XapI RAATTY 1 cut(s) 65
XceI RCATGY 3 cut(s) 471, 487, 619
XspI CTAG 3 cut(s) 383, 656, 910
Zsp2I ATGCAT 2 cut(s) 469, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.