FvH4_2g25871

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000125
Physical Location & Seq
Forward (+)
20890512 .. 20892113
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25871.t1

Sequence Viewer

Length: 1308 bp
ATGAGAAGGCGAAAGAAGGCAAAGATGAGGCTGTTGGATCTACCTGTGGAAATCCTGTGTGACATTTTTAAGAGACTTTCACTAAAATCAGTCTGCTGCCTCCGATGCGTCTCTAAAACCTTGTTAGACATAGTCCAGTCGCCCTTTTTCTTTTCACTGCATTCTCGTTTCTCCATTCTGTTAGGATCATTCCTAACCCTCAGCCCAATCCTTCAAGTCCATCAGCCCATCAGCCCAACCTATCTTCATCATGTGATCCCTCATGTACAGTTGCGTCTTCTTGTGGCAGCAACTCAGTTCCCAGTTTGCAGCAACTCAGCTCCCACTTATCACATTCTCACCAACGCTGCTTCTGATCATCAACCTCCTCGCCTTACGCTGCGTTTTGTGGGAGAAGATTCGTCCACAAATGAAATGAAAGAGATAGAATGCCTGAATTACGATGGCAACAAAGGTAGCCTTACTGTCTCGAAAATTCTGTCAACCTCCGACGATGCTCGTTATTCTCTGTATTTTGCTTACTGCAACTTCTTTCTCTTCACTAGAAACTACGAAGATTGCTTCTTGATCGATCCTTTCACCAGAGAAGTTCTAAGGCTCCCGAAGAGTGGCATTCAGTATTCAAAGTATGGTACTCGTAACACTAAAATCTTCAACGAACCCCAAGTTCTTGAATTGGGCACAAATTCATGGCGACAGATACCCCCGCAAACTCTAAATTCTAGTTCCTCCCCAAAGTATCCTTTATGTTCTCACACGAGCATATGTGCTTTTGGAGATATGCATTGGTTGAGTCTAGAAGGCAGAGAAATTCTCATCATTTCTTTTGATTTCACAAAAGAAGAGTTCTATCGGACTCCCACTTTGGAGTTACCAAGCTTGAAGCTTGTGGGCACAAACTTGATTGCTTTAAAAGGATCTATGGCTGTTGTTATAATCGACTTCACTTCATGTGTGAACATTGATATATGGGTGATGAAAGATTATCATACAAAACAGTGGGTGCGAGATTACACTATAGATGTGCATGAATCATGCCAAGATTTTGGGTTCATGAACGCTTGTTGTGGTGAATGGGAGAATGGAATACTTTTCGATGATGAATTGGACGAAACATCATTGTTTGTGGACTTGAGATGCAATTCTATGAAAGTTGTGAAACGTCCAAGTAGGTGTAAAGGCATTTGGTCGAACATTTTGAGTGTTCATAGGAGCTTGCTCTCCCTGAAAAATTATGGAAATTTGGATGAAGCAAGACCACCCTTGCTTGATTTCAGAAACAATTACTTATGGCAGCACCCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

436

Amino Acids

50.09

Weight (kDa)

7.85

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 51 9.5e-09 F-box domain
F-box-like PF12937 12 - 49 5.8e-07 F-box-like
FBA_3 PF08268 215 - 345 8.7e-13 F-box associated beta propeller domain
FBA_1 PF07734 216 - 345 8.6e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 935
AciI CCGC 1 cut(s) 707
AclWI GGATC 5 cut(s) 45, 193, 250, 566, 925
AcsI RAATTY 5 cut(s) 474, 685, 718, 810, 1240
AfaI GTAC 2 cut(s) 267, 634
AfiI CCNNNNNNNGG 1 cut(s) 608
AgsI TTSAA 5 cut(s) 215, 624, 655, 674, 883
AluBI AGCT 4 cut(s) 320, 879, 886, 1215
AluI AGCT 4 cut(s) 320, 879, 886, 1215
Alw26I GTCTC 3 cut(s) 67, 115, 472
AlwI GGATC 5 cut(s) 45, 193, 250, 566, 925
ApeKI GCWGC 6 cut(s) 96, 287, 309, 347, 379, 1294
ApoI RAATTY 5 cut(s) 474, 685, 718, 810, 1240
ArsI GACNNNNNNTTYG 4 cut(s) 464, 496, 847, 879
AsuHPI GGTGA 4 cut(s) 331, 571, 985, 1082
BaeGI GKGCMC 2 cut(s) 683, 896
BauI CACGAG 1 cut(s) 757
BbsI GAAGAC 1 cut(s) 269
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 5 cut(s) 83, 299, 321, 334, 366
BccI CCATC 3 cut(s) 228, 236, 437
BciVI GTATCC 1 cut(s) 750
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 3 cut(s) 67, 115, 472
BfaI CTAG 3 cut(s) 543, 723, 797
BfmI CTRYAG 1 cut(s) 1017
BfuI GTATCC 1 cut(s) 750
BisI GCNGC 6 cut(s) 97, 288, 310, 348, 380, 1295
BlsI GCNGC 6 cut(s) 98, 289, 311, 349, 381, 1296
BmiI GGNNCC 1 cut(s) 599
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 3 cut(s) 95, 484, 1127
BmuI ACTGGG 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 798, 830
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 1153
Bsa29I ATCGAT 1 cut(s) 570
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse1I ACTGG 2 cut(s) 136, 302
BseCI ATCGAT 1 cut(s) 570
BseGI GGATG 1 cut(s) 1252
BseLI CCNNNNNNNGG 1 cut(s) 608
BseMII CTCAG 3 cut(s) 214, 308, 330
BseNI ACTGG 2 cut(s) 136, 302
BseRI GAGGAG 1 cut(s) 357
BseSI GKGCMC 2 cut(s) 683, 896
BseXI GCAGC 5 cut(s) 83, 299, 321, 334, 366
BshVI ATCGAT 1 cut(s) 570
BslI CCNNNNNNNGG 1 cut(s) 608
BsmAI GTCTC 3 cut(s) 67, 115, 472
BsmBI CGTCTC 1 cut(s) 115
BsmI GAATGC 3 cut(s) 160, 434, 612
Bsp1286I GDGCHC 2 cut(s) 683, 896
Bsp1407I TGTACA 1 cut(s) 265
Bsp143I GATC 7 cut(s) 37, 185, 255, 355, 567, 571, 917
BspACI CCGC 1 cut(s) 707
BspCNI CTCAG 3 cut(s) 213, 307, 329
BspDI ATCGAT 1 cut(s) 570
BspHI TCATGA 1 cut(s) 1053
BspLI GGNNCC 1 cut(s) 599
BspPI GGATC 5 cut(s) 45, 193, 250, 566, 925
BsrGI TGTACA 1 cut(s) 265
BsrI ACTGG 2 cut(s) 136, 302
BssMI GATC 7 cut(s) 37, 185, 255, 355, 567, 571, 917
BssSI CACGAG 1 cut(s) 757
Bst2BI CACGAG 1 cut(s) 757
Bst4CI ACNGT 3 cut(s) 270, 466, 999
Bst6I CTCTTC 3 cut(s) 542, 599, 837
BstAUI TGTACA 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 1217
BstDEI CTNAG 4 cut(s) 200, 294, 316, 593
BstF5I GGATG 1 cut(s) 1252
BstKTI GATC 7 cut(s) 40, 188, 258, 358, 570, 574, 920
BstMAI GTCTC 3 cut(s) 67, 115, 472
BstMBI GATC 7 cut(s) 37, 185, 255, 355, 567, 571, 917
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 2 cut(s) 683, 896
BstV1I GCAGC 5 cut(s) 83, 299, 321, 334, 366
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 2 cut(s) 37, 917
BstXI CCANNNNNNTGG 1 cut(s) 1046
BstYI RGATCY 2 cut(s) 37, 917
Bsu15I ATCGAT 1 cut(s) 570
BsuI GTATCC 1 cut(s) 750
BsuTUI ATCGAT 1 cut(s) 570
BtsCI GGATG 1 cut(s) 1252
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 155, 1004
Cac8I GCNNGC 1 cut(s) 1217
CciI TCATGA 1 cut(s) 1053
ClaI ATCGAT 1 cut(s) 570
CseI GACGC 2 cut(s) 97, 263
Csp6I GTAC 2 cut(s) 266, 633
CviAII CATG 7 cut(s) 251, 263, 690, 951, 1028, 1035, 1054
CviQI GTAC 2 cut(s) 266, 633
DdeI CTNAG 4 cut(s) 200, 294, 316, 593
DpnI GATC 7 cut(s) 39, 187, 257, 357, 569, 573, 919
DpnII GATC 7 cut(s) 37, 185, 255, 355, 567, 571, 917
DraI TTTAAA 1 cut(s) 912
Eam1104I CTCTTC 3 cut(s) 542, 599, 837
EarI CTCTTC 3 cut(s) 542, 599, 837
EcoT22I ATGCAT 1 cut(s) 786
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 7 cut(s) 254, 266, 693, 954, 1031, 1038, 1057
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 7 cut(s) 250, 262, 689, 950, 1027, 1034, 1053
FauI CCCGC 1 cut(s) 714
FauNDI CATATG 1 cut(s) 764
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 6 cut(s) 97, 288, 310, 348, 380, 1295
FokI GGATG 1 cut(s) 1259
Fsp4HI GCNGC 6 cut(s) 97, 288, 310, 348, 380, 1295
FspBI CTAG 3 cut(s) 543, 723, 797
GluI GCNGC 6 cut(s) 97, 288, 310, 348, 380, 1295
HgaI GACGC 2 cut(s) 97, 263
Hin1II CATG 7 cut(s) 254, 266, 693, 954, 1031, 1038, 1057
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HindIII AAGCTT 2 cut(s) 877, 884
HinfI GANTC 4 cut(s) 398, 793, 856, 1031
HphI GGTGA 4 cut(s) 331, 571, 985, 1082
Hpy166II GTNNAC 4 cut(s) 405, 483, 958, 1129
Hpy188I TCNGA 5 cut(s) 104, 355, 490, 855, 1277
Hpy188III TCNNGA 6 cut(s) 469, 565, 601, 671, 797, 1054
Hpy8I GTNNAC 4 cut(s) 405, 483, 958, 1129
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 3 cut(s) 10, 221, 794
HpyCH4III ACNGT 3 cut(s) 270, 466, 999
HpyCH4IV ACGT 1 cut(s) 1162
HpyCH4V TGCA 6 cut(s) 160, 309, 525, 784, 1027, 1140
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 4 cut(s) 200, 294, 316, 593
HpySE526I ACGT 1 cut(s) 1162
Hsp92II CATG 7 cut(s) 254, 266, 693, 954, 1031, 1038, 1057
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 7 cut(s) 37, 185, 255, 355, 567, 571, 917
LmnI GCTCC 3 cut(s) 325, 603, 1212
LpnPI CCDG 7 cut(s) 57, 68, 149, 315, 446, 595, 1238
Lsp1109I GCAGC 5 cut(s) 83, 299, 321, 334, 366
LweI GCATC 3 cut(s) 95, 484, 1127
MaeI CTAG 3 cut(s) 543, 723, 797
MaeII ACGT 1 cut(s) 1162
MaeIII GTNAC 3 cut(s) 59, 638, 870
MalI GATC 7 cut(s) 39, 187, 257, 357, 569, 573, 919
MboI GATC 7 cut(s) 37, 185, 255, 355, 567, 571, 917
MboII GAAGA 8 cut(s) 236, 269, 407, 529, 566, 616, 643, 854
MflI RGATCY 2 cut(s) 37, 917
MhlI GDGCHC 2 cut(s) 683, 896
MlyI GAGTC 2 cut(s) 802, 850
MmeI TCCRAC 2 cut(s) 15, 513
MnlI CCTC 8 cut(s) 21, 110, 209, 270, 375, 378, 496, 739
Mph1103I ATGCAT 1 cut(s) 786
MseI TTAA 2 cut(s) 69, 911
Mva1269I GAATGC 3 cut(s) 160, 434, 612
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeI CATATG 1 cut(s) 764
NdeII GATC 7 cut(s) 37, 185, 255, 355, 567, 571, 917
NlaIII CATG 7 cut(s) 254, 266, 693, 954, 1031, 1038, 1057
NlaIV GGNNCC 1 cut(s) 599
NmuCI GTSAC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 786
PagI TCATGA 1 cut(s) 1053
PctI GAATGC 3 cut(s) 160, 434, 612
PfeI GAWTC 2 cut(s) 398, 1031
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 6 cut(s) 98, 289, 311, 349, 381, 1296
PleI GAGTC 2 cut(s) 801, 850
PpsI GAGTC 2 cut(s) 801, 850
PsiI TTATAA 1 cut(s) 935
PspN4I GGNNCC 1 cut(s) 599
PsuI RGATCY 2 cut(s) 37, 917
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 2 cut(s) 267, 634
RsaNI GTAC 2 cut(s) 266, 633
SaqAI TTAA 2 cut(s) 69, 911
SatI GCNGC 6 cut(s) 97, 288, 310, 348, 380, 1295
Sau3AI GATC 7 cut(s) 37, 185, 255, 355, 567, 571, 917
SchI GAGTC 2 cut(s) 802, 850
SduI GDGCHC 2 cut(s) 683, 896
SfaNI GCATC 3 cut(s) 95, 484, 1127
SfcI CTRYAG 1 cut(s) 1017
SmlI CTYRAG 1 cut(s) 1132
SmoI CTYRAG 1 cut(s) 1132
SsiI CCGC 1 cut(s) 707
SspMI CTAG 3 cut(s) 543, 723, 797
TaaI ACNGT 3 cut(s) 270, 466, 999
TaiI ACGT 1 cut(s) 1165
TaqI TCGA 5 cut(s) 470, 570, 939, 1095, 1190
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 2 cut(s) 398, 1031
Tru1I TTAA 2 cut(s) 69, 911
Tru9I TTAA 2 cut(s) 69, 911
TscAI CASTG 2 cut(s) 162, 1004
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 6 cut(s) 96, 287, 309, 347, 379, 1294
Tsp45I GTSAC 1 cut(s) 59
TspRI CASTG 2 cut(s) 162, 1004
Tth111I GACNNNGTC 1 cut(s) 131
XapI RAATTY 5 cut(s) 474, 685, 718, 810, 1240
XbaI TCTAGA 1 cut(s) 796
XspI CTAG 3 cut(s) 543, 723, 797
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.