Rh7AG121200

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000125
Physical Location & Seq
Reverse (-)
9484583 .. 9485406
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG121200.1

Sequence Viewer

Length: 585 bp
ATGGGATTCGATAAGACAAGTAACAAGCACAAAATTGTTCGTGTTCGCAGAATCTGTAGAGAAGCACCATATGATTACAGATTACTGTATGCGGGGACCCATGTTCTTGAATTGGGTACAACCTCATGGCGTGAGATAGACTCGGCTGTTCCCGGTAACTGGAGATTACTGGATGGCTTATGTGCATGTGGAGATATGCATTGGTGTGCAAGTGGAGATACGCATTGGTTGAATAGAAGTGCACTGCAGAGTGGTATAATCACTTTTGACTTCACGAAAGAAGGGTTCTATTTGAATACTGCTCCTCCCGGATCGTTCAGCTCGAACAAGAACTTGCACTCGCTTACTATAAGAGGAGCTTTGGCCATTGTGACGACTTCTTCGTCAGCAGATATGACTCAGATTGAGATATGGGTGATGAAAGATTATGATAGAAAAGTGTGGATGCAAGAGTACACAGTAAATGTTGGAGTGTTTTCTGATTTTGGACTGAAGTTTGCTACTTGTGGTGAATGGGAACATGGCATATATTTCAATAATAGCAGCAGAGATTCTGAAAAAATTTGTACATCTTTTTGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

194

Amino Acids

22.09

Weight (kDa)

6.58

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 1 - 156 4.6e-15 F-box associated beta propeller domain
FBA_3 PF08268 1 - 153 5.1e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 382
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 561
AcuI CTGAAG 1 cut(s) 512
AfaI GTAC 3 cut(s) 118, 455, 568
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 4 cut(s) 110, 232, 295, 535
AluBI AGCT 2 cut(s) 321, 359
AluI AGCT 2 cut(s) 321, 359
Alw21I GWGCWC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 240
AlwI GGATC 1 cut(s) 319
AlwNI CAGNNNCTG 1 cut(s) 54
AoxI GGCC 1 cut(s) 363
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 543
ApoI RAATTY 1 cut(s) 561
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AspS9I GGNCC 1 cut(s) 96
AsuC2I CCSGG 2 cut(s) 153, 309
AsuHPI GGTGA 2 cut(s) 427, 521
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 555
BccI CCATC 1 cut(s) 167
BcnI CCSGG 2 cut(s) 153, 309
BfmI CTRYAG 2 cut(s) 55, 245
BisI GCNGC 1 cut(s) 544
BlsI GCNGC 1 cut(s) 545
Bme1390I CCNGG 2 cut(s) 153, 309
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 2 cut(s) 97, 98
BmrFI CCNGG 2 cut(s) 153, 309
BmsI GCATC 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 1 cut(s) 181
BpuMI CCSGG 2 cut(s) 153, 309
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 164, 174
BseGI GGATG 2 cut(s) 178, 450
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 2 cut(s) 164, 174
BseRI GAGGAG 2 cut(s) 294, 369
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 555
BshFI GGCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 153, 309
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 2 cut(s) 311, 579
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 97, 98
BspMAI CTGCAG 1 cut(s) 249
BspPI GGATC 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 566
BsrI ACTGG 2 cut(s) 164, 174
BssMI GATC 2 cut(s) 311, 579
Bst4CI ACNGT 2 cut(s) 87, 460
BstAUI TGTACA 1 cut(s) 566
BstDEI CTNAG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 178, 450
BstKTI GATC 2 cut(s) 314, 582
BstMBI GATC 2 cut(s) 311, 579
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 151, 307
BstSFI CTRYAG 2 cut(s) 55, 245
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 579
BstYI RGATCY 1 cut(s) 579
BsuRI GGCC 1 cut(s) 365
BtsCI GGATG 2 cut(s) 178, 450
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
CaiI CAGNNNCTG 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 3 cut(s) 117, 454, 567
CviAII CATG 4 cut(s) 101, 126, 186, 521
CviJI RGCY 5 cut(s) 146, 177, 321, 359, 365
CviKI_1 RGCY 5 cut(s) 146, 177, 321, 359, 365
CviQI GTAC 3 cut(s) 117, 454, 567
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 313, 581
DpnII GATC 2 cut(s) 311, 579
DrdI GACNNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 201
FaeI CATG 4 cut(s) 104, 129, 189, 524
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FaqI GGGAC 1 cut(s) 109
FatI CATG 4 cut(s) 100, 125, 185, 520
FauI CCCGC 1 cut(s) 85
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 544
FokI GGATG 2 cut(s) 185, 457
Fsp4HI GCNGC 1 cut(s) 544
GluI GCNGC 1 cut(s) 544
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 1 cut(s) 365
HapII CCGG 2 cut(s) 153, 309
Hin1II CATG 4 cut(s) 104, 129, 189, 524
HinfI GANTC 5 cut(s) 6, 51, 140, 397, 551
HpaII CCGG 2 cut(s) 153, 309
HphI GGTGA 2 cut(s) 427, 521
Hpy166II GTNNAC 2 cut(s) 242, 456
Hpy188I TCNGA 3 cut(s) 402, 481, 556
Hpy188III TCNNGA 2 cut(s) 107, 274
Hpy8I GTNNAC 2 cut(s) 242, 456
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 2 cut(s) 87, 460
HpyCH4V TGCA 7 cut(s) 185, 199, 209, 242, 247, 337, 448
HpyF3I CTNAG 1 cut(s) 399
Hsp92II CATG 4 cut(s) 104, 129, 189, 524
KflI GGGWCCC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 311, 579
LmnI GCTCC 2 cut(s) 307, 356
LpnPI CCDG 4 cut(s) 145, 155, 166, 322
Lsp1109I GCAGC 1 cut(s) 555
LweI GCATC 1 cut(s) 435
MaeIII GTNAC 3 cut(s) 20, 155, 370
MalI GATC 2 cut(s) 313, 581
MboI GATC 2 cut(s) 311, 579
MboII GAAGA 1 cut(s) 372
MflI RGATCY 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 244
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 3 cut(s) 33, 110, 561
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 2 cut(s) 134, 391
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 3 cut(s) 133, 315, 347
Mox20I TGGCCA 1 cut(s) 365
Mph1103I ATGCAT 1 cut(s) 201
MscI TGGCCA 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 2 cut(s) 153, 309
MspR9I CCNGG 2 cut(s) 153, 309
NciI CCSGG 2 cut(s) 153, 309
NdeI CATATG 1 cut(s) 70
NdeII GATC 2 cut(s) 311, 579
NlaIII CATG 4 cut(s) 104, 129, 189, 524
NlaIV GGNNCC 2 cut(s) 97, 98
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 201
NspI RCATGY 1 cut(s) 189
PcsI WCGNNNNNNNCGW 2 cut(s) 320, 380
PfeI GAWTC 3 cut(s) 6, 51, 551
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 1 cut(s) 545
PleI GAGTC 2 cut(s) 134, 391
PpsI GAGTC 2 cut(s) 134, 391
PpuMI RGGWCCY 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 97, 98
PspPI GGNCC 1 cut(s) 96
PspPPI RGGWCCY 1 cut(s) 96
PstI CTGCAG 1 cut(s) 249
PstNI CAGNNNCTG 1 cut(s) 54
PsuI RGATCY 1 cut(s) 579
RsaI GTAC 3 cut(s) 118, 455, 568
RsaNI GTAC 3 cut(s) 117, 454, 567
RseI CAYNNNNRTG 1 cut(s) 204
SatI GCNGC 1 cut(s) 544
Sau3AI GATC 2 cut(s) 311, 579
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 2 cut(s) 134, 391
ScrFI CCNGG 2 cut(s) 153, 309
SduI GDGCHC 1 cut(s) 244
SetI ASST 3 cut(s) 125, 323, 361
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 2 cut(s) 55, 245
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 3 cut(s) 33, 110, 561
SsiI CCGC 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 151, 307
TaaI ACNGT 2 cut(s) 87, 460
TaqI TCGA 2 cut(s) 9, 323
TasI AATT 3 cut(s) 33, 110, 561
TatI WGTACW 2 cut(s) 453, 566
TfiI GAWTC 3 cut(s) 6, 51, 551
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 543
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 434
TspRI CASTG 1 cut(s) 249
VneI GTGCAC 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 1 cut(s) 561
XceI RCATGY 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.