Rh5DG532200

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000125
Physical Location & Seq
Forward (+)
82011271 .. 82017806
6536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG532200.1

Sequence Viewer

Length: 1002 bp
ATGGGATTTGATAATACCGCCAACACCTACAAAATTGTTTGTGTTTCCGTTGATATTCGGACCTGTCAGGTGGTGGCTTTTGTTTATGTATTGGGGCAAAGTTCATGCTCATGGCGAGAAATACAAGCTGGTCCTCCAGGTATGTTGAGCACCAAAAACGTATGTGCACATGGAGACATGCATTGGTTTGTTGGTGAAGTAGGCTATAATGTTGGAGGAAGAAGCCGCATCATTTCGTTTGATTTCAAAAAAGAGGAGTTCTGTTGGACTCCTCATCCTACCTTAAGCACCGGTTGTAATTCGCTCATTTCTGATTACGGTCACTTGCTCAATTTGAAAGGTTCCCTGGCCCTTGTGGATGCTTCACCAGGCATGTATGTTTTGATTTGGGTGATGAAAAATTATGGAACAAAAGAGTGGGCGTTGGATTACAAATTCAATGTTGATGTCCATATGACAGGTTTAGAGATTGGTGAATGGAATGACGGCATATTTTTTGTCCAAAAAGATGATGGATGGTGGAAGTATCATCCTAGTGTCTGCTACTTTTTGAATTGGAAGCACAATTCAATGAGACGAATAGAAAATGCATGGAGTGGAGTTGAAAAGAAAGTATTCAGTTGCACCGGAAGCCTTGTTTCTTTAAAGAGGTATGGTAATTTAGTTCTAGAAACAGAAGCAAATGCTATATCAAACTGTGAAAGTAAAATACAAGAGAAGATTGAGGAAGCGGAGTTACTTAGGAGGAAGTTAGAGGAATTGGAGGACACTGAAAAGAATTTGAGAGATGAGCTGGAAAATGCACAAACAGCATTGGATACCAGTCGATCTCGCGGATCAGATGAAGCTGTTGGCAACTCCAAAACATCAGTTGAAACTGGAGATGACATGGAATCATCAAAGAAAGCTATACTAGACAAGTTAGAGGAGAGGAAAAGAGAATTGCAACTGCCGATAAACATTAATTATAACTGTATAAGATATGGAGATGTGGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

333

Amino Acids

37.82

Weight (kDa)

5.33

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 1 - 205 1.9e-18 F-box associated beta propeller domain
FBA_1 PF07734 1 - 169 1.3e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 969
AccII CGCG 1 cut(s) 834
AciI CCGC 4 cut(s) 18, 226, 731, 834
AclWI GGATC 1 cut(s) 844
AcsI RAATTY 2 cut(s) 434, 778
AflII CTTAAG 1 cut(s) 283
AgeI ACCGGT 1 cut(s) 290
AgsI TTSAA 7 cut(s) 247, 337, 439, 553, 570, 605, 875
AjnI CCWGG 3 cut(s) 136, 345, 367
AluBI AGCT 4 cut(s) 128, 793, 848, 908
AluI AGCT 4 cut(s) 128, 793, 848, 908
Alw21I GWGCWC 2 cut(s) 152, 169
Alw26I GTCTC 2 cut(s) 168, 568
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 1 cut(s) 844
AoxI GGCC 1 cut(s) 348
ApaLI GTGCAC 1 cut(s) 165
ApoI RAATTY 2 cut(s) 434, 778
AseI ATTAAT 1 cut(s) 963
AsiGI ACCGGT 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 614
AspS9I GGNCC 3 cut(s) 60, 131, 349
AsuHPI GGTGA 4 cut(s) 206, 357, 403, 485
AvaII GGWCC 2 cut(s) 60, 131
BaeGI GKGCMC 1 cut(s) 169
BarI GAAGNNNNNNTAC 2 cut(s) 720, 752
Bbv12I GWGCWC 2 cut(s) 152, 169
BccI CCATC 2 cut(s) 506, 510
BceAI ACGGC 1 cut(s) 502
BciT130I CCWGG 3 cut(s) 138, 347, 369
BciVI GTATCC 1 cut(s) 811
BcoDI GTCTC 2 cut(s) 168, 568
BfaI CTAG 3 cut(s) 534, 668, 914
BfrI CTTAAG 1 cut(s) 283
BfuI GTATCC 1 cut(s) 811
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 3 cut(s) 138, 347, 369
Bme18I GGWCC 2 cut(s) 60, 131
BmgT120I GGNCC 3 cut(s) 60, 131, 349
BmiI GGNNCC 2 cut(s) 343, 996
BmrFI CCNGG 3 cut(s) 138, 347, 369
BmsI GCATC 2 cut(s) 237, 349
BpmI CTGGAG 2 cut(s) 120, 900
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 2 cut(s) 290, 626
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 822, 883
BseBI CCWGG 3 cut(s) 138, 347, 369
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 4 cut(s) 274, 364, 521, 529
BseNI ACTGG 2 cut(s) 822, 883
BseRI GAGGAG 3 cut(s) 261, 269, 941
BseSI GKGCMC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 834
BshFI GGCC 1 cut(s) 350
BshTI ACCGGT 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 152, 169
BsiSI CCGG 2 cut(s) 291, 627
BsmAI GTCTC 2 cut(s) 168, 568
BsmBI CGTCTC 1 cut(s) 568
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 152, 169
Bsp143I GATC 2 cut(s) 827, 836
BspACI CCGC 4 cut(s) 18, 226, 731, 834
BspANI GGCC 1 cut(s) 350
BspFNI CGCG 1 cut(s) 834
BspLI GGNNCC 2 cut(s) 343, 996
BspPI GGATC 1 cut(s) 844
BspTI CTTAAG 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 2 cut(s) 822, 883
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 827, 836
Bst2UI CCWGG 3 cut(s) 138, 347, 369
Bst4CI ACNGT 3 cut(s) 320, 698, 974
BstAFI CTTAAG 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 740
BstF5I GGATG 4 cut(s) 274, 364, 521, 529
BstFNI CGCG 1 cut(s) 834
BstKTI GATC 2 cut(s) 830, 839
BstMAI GTCTC 2 cut(s) 168, 568
BstMBI GATC 2 cut(s) 827, 836
BstMWI GCNNNNNNNGC 2 cut(s) 630, 809
BstNI CCWGG 3 cut(s) 138, 347, 369
BstNSI RCATGY 2 cut(s) 181, 376
BstSCI CCNGG 3 cut(s) 136, 345, 367
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 1 cut(s) 834
BsuI GTATCC 1 cut(s) 811
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 4 cut(s) 274, 364, 521, 529
BtsIMutI CAGTG 1 cut(s) 768
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 3 cut(s) 60, 131, 349
CspAI ACCGGT 1 cut(s) 290
CviAII CATG 7 cut(s) 105, 111, 170, 178, 373, 591, 889
DdeI CTNAG 1 cut(s) 740
DpnI GATC 2 cut(s) 829, 838
DpnII GATC 2 cut(s) 827, 836
DraI TTTAAA 1 cut(s) 645
Eco47I GGWCC 2 cut(s) 60, 131
EcoRII CCWGG 3 cut(s) 136, 345, 367
EcoT22I ATGCAT 2 cut(s) 183, 592
Esp3I CGTCTC 1 cut(s) 568
FaeI CATG 7 cut(s) 108, 114, 173, 181, 376, 594, 892
FatI CATG 7 cut(s) 104, 110, 169, 177, 372, 590, 888
FauNDI CATATG 1 cut(s) 453
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 4 cut(s) 261, 371, 516, 528
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 3 cut(s) 534, 668, 914
GluI GCNGC 1 cut(s) 226
GsuI CTGGAG 2 cut(s) 120, 900
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 291, 627
Hin1II CATG 7 cut(s) 108, 114, 173, 181, 376, 594, 892
HinfI GANTC 2 cut(s) 268, 893
HpaII CCGG 2 cut(s) 291, 627
HphI GGTGA 4 cut(s) 206, 357, 403, 485
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 60, 313, 841
Hpy188III TCNNGA 1 cut(s) 668
Hpy8I GTNNAC 1 cut(s) 167
HpyCH4III ACNGT 3 cut(s) 320, 698, 974
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 6 cut(s) 167, 181, 590, 624, 803, 946
HpyF10VI GCNNNNNNNGC 2 cut(s) 630, 809
HpyF3I CTNAG 1 cut(s) 740
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 7 cut(s) 108, 114, 173, 181, 376, 594, 892
Kzo9I GATC 2 cut(s) 827, 836
LmnI GCTCC 1 cut(s) 994
LweI GCATC 2 cut(s) 237, 349
MaeI CTAG 3 cut(s) 534, 668, 914
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 320, 735
MalI GATC 2 cut(s) 829, 838
MboI GATC 2 cut(s) 827, 836
MboII GAAGA 2 cut(s) 231, 730
MhlI GDGCHC 2 cut(s) 152, 169
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 3 cut(s) 193, 245, 405
Mph1103I ATGCAT 2 cut(s) 183, 592
MroXI GAANNNNTTC 1 cut(s) 614
MseI TTAA 4 cut(s) 284, 644, 963, 1000
MslI CAYNNNNRTG 2 cut(s) 109, 534
MspCI CTTAAG 1 cut(s) 283
MspI CCGG 2 cut(s) 291, 627
MspR9I CCNGG 3 cut(s) 138, 347, 369
MvaI CCWGG 3 cut(s) 138, 347, 369
MvnI CGCG 1 cut(s) 834
MwoI GCNNNNNNNGC 2 cut(s) 630, 809
NdeI CATATG 1 cut(s) 453
NdeII GATC 2 cut(s) 827, 836
NlaIII CATG 7 cut(s) 108, 114, 173, 181, 376, 594, 892
NlaIV GGNNCC 2 cut(s) 343, 996
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 2 cut(s) 183, 592
NspI RCATGY 2 cut(s) 181, 376
PdmI GAANNNNTTC 1 cut(s) 614
PfeI GAWTC 1 cut(s) 893
PinAI ACCGGT 1 cut(s) 290
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 963
PsiI TTATAA 1 cut(s) 969
Psp6I CCWGG 3 cut(s) 136, 345, 367
PspGI CCWGG 3 cut(s) 136, 345, 367
PspN4I GGNNCC 2 cut(s) 343, 996
PspPI GGNCC 3 cut(s) 60, 131, 349
RseI CAYNNNNRTG 2 cut(s) 109, 534
SaqAI TTAA 4 cut(s) 284, 644, 963, 1000
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 2 cut(s) 827, 836
Sau96I GGNCC 3 cut(s) 60, 131, 349
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 3 cut(s) 138, 347, 369
SduI GDGCHC 2 cut(s) 152, 169
SfaNI GCATC 2 cut(s) 237, 349
SinI GGWCC 2 cut(s) 60, 131
SmiMI CAYNNNNRTG 2 cut(s) 109, 534
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SsiI CCGC 4 cut(s) 18, 226, 731, 834
SspMI CTAG 3 cut(s) 534, 668, 914
StyD4I CCNGG 3 cut(s) 136, 345, 367
TaaI ACNGT 3 cut(s) 320, 698, 974
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 826
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 893
Tru1I TTAA 4 cut(s) 284, 644, 963, 1000
Tru9I TTAA 4 cut(s) 284, 644, 963, 1000
TscAI CASTG 1 cut(s) 775
TseFI GTSAC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 3 cut(s) 93, 410, 858
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 775
Vha464I CTTAAG 1 cut(s) 283
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 60, 131
VspI ATTAAT 1 cut(s) 963
XapI RAATTY 2 cut(s) 434, 778
XbaI TCTAGA 1 cut(s) 667
XceI RCATGY 2 cut(s) 181, 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 614
XspI CTAG 3 cut(s) 534, 668, 914
Zsp2I ATGCAT 2 cut(s) 183, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.