MD11G1006200.v1.1

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000125
Physical Location & Seq
Reverse (-)
589736 .. 590035
300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1006200.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGTGAGGAGCAATCAGAGTAGATTGGGGCACTGCTGCATGAACAATGCAAGGCTGATGGAGCTCCCCACGGAAATCCTTGACAACATCTCTTTGAGGCTACCCATAAGCTGTCTTTTTTGCCTCAGATGTGTCTCTAAGACATCAAAGAACATAGTCGACTGCCCTTGCTTTTTTACATTACGCATGCAATGTTTACTTTCTGCACAATGTACTGTTGCTTCCAAACGGGTACCTTTGCTTAGCTTCTTGATCACATTTCCTCTGACTCTCATTCTGGATTTGACTTTATACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
DUF4219 F-box FBA_3 Retrotran_gag_2

Protein Analysis

100

Amino Acids

11.25

Weight (kDa)

8.85

Isoelectric Point (pI)

67.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 59 7.9e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 159
AfaI GTAC 2 cut(s) 214, 234
AluBI AGCT 3 cut(s) 64, 111, 246
AluI AGCT 3 cut(s) 64, 111, 246
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 33
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 52
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 139
BisI GCNGC 1 cut(s) 37
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 33, 66
Bsp143I GATC 1 cut(s) 252
Bsp1720I GCTNAGC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 125, 138, 242
BstDSI CCRYGG 1 cut(s) 69
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 295
Cac8I GCNNGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 213, 233
CviAII CATG 2 cut(s) 40, 187
CviJI RGCY 5 cut(s) 55, 64, 100, 111, 246
CviKI_1 RGCY 5 cut(s) 55, 64, 100, 111, 246
CviQI GTAC 2 cut(s) 213, 233
DdeI CTNAG 3 cut(s) 125, 138, 242
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 2 cut(s) 43, 190
FaiI YATR 5 cut(s) 41, 107, 155, 188, 292
FatI CATG 2 cut(s) 39, 186
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 43, 190
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 268
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 160, 197
Hpy188I TCNGA 3 cut(s) 18, 128, 267
Hpy188III TCNNGA 2 cut(s) 250, 278
Hpy8I GTNNAC 2 cut(s) 160, 197
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 4 cut(s) 39, 50, 190, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 3 cut(s) 125, 138, 242
Hsp92II CATG 2 cut(s) 43, 190
KpnI GGTACC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 9, 61, 69
LpnPI CCDG 1 cut(s) 263
Lsp1109I GCAGC 1 cut(s) 23
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MhlI GDGCHC 2 cut(s) 33, 66
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 3 cut(s) 90, 134, 273
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 1 cut(s) 252
NlaIII CATG 2 cut(s) 43, 190
NlaIV GGNNCC 1 cut(s) 234
NspI RCATGY 1 cut(s) 190
PaeI GCATGC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 234
RsaI GTAC 2 cut(s) 214, 234
RsaNI GTAC 2 cut(s) 213, 233
SacI GAGCTC 1 cut(s) 66
SalI GTCGAC 1 cut(s) 158
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 1 cut(s) 252
SchI GAGTC 1 cut(s) 262
SduI GDGCHC 2 cut(s) 33, 66
SetI ASST 4 cut(s) 66, 113, 238, 248
SgeI CNNG 9 cut(s) 52, 63, 82, 92, 180, 199, 242, 262, 290
SphI GCATGC 1 cut(s) 190
SstI GAGCTC 1 cut(s) 66
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 159
TatI WGTACW 1 cut(s) 212
TscAI CASTG 1 cut(s) 38
TseI GCWGC 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 38
XceI RCATGY 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.