Rmu_sc0002676.1_g000002

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002676.1
OG0000125
Physical Location & Seq
Reverse (-)
9380 .. 10684
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002676.1_g000002.1.cds

Sequence Viewer

Length: 1305 bp
atggcgaagaagagccagagagtgaggagcgatgttgcaaaaaagcagctgatggaactaccaatcgatacactggtcgatatctttttgagactgcctgcaaagtcactaggttgcattcgatgtgtgtctaagaccttgttaaagatagtgaacaacatctctttctctagacttcacacacatttacttattgccgccaattcagctgctgctgctgattcaatacctctacttatgtgtttctctcaatcatggcttaaagagagcgatgagctttcagtgacactgcaatcactggaatacaacaccaacaccttaacaaaaggcagatatgcaattactttttcgtcacattactatgctatttggtcacattactatgtgtgttttgttttctgcaacttgttttggttgagatccgaaaatggagattgcatattaatcaatcctcttagggaaagggaagttgtaaggctcccagaaactactttcgtacaacctacaaagagtggagtgtttcgcacttgtaggtttggaatgggatttgataataaaaccaataccttcaaacttttaggtgttactcatgaatctgactttcattttcaatttgggcttgatgagggtgaagcagctttggatgagaatcaacaaagaaaatttaatggtgattatagacataagtactgtatgacagcacatattcttgtattgggcacagactcatggcgagaaataccctcacttcctccttgtgagttggacatcatgaacgacccggtatgtgcaaatggagatgtgcattggttgacaagagaaagatgtaaaagaataatttcttttaacttcaagaaagaagagttctattgcatccctactcctcccacgttaaaaagctcgaacaactcaaaaatgcgtttgcttactctgagaggatctttggccattgtggagacttcttcttcatcatcaccaggaggtatcattacgaacattgagatatgggttttaaaagattttgacgaaaaacaatgggtaagatactacaagaacaaaatatcagacactatttgttgtggattattatctccgggggaatgggaacatggaatatttttcacaagtcacaattttccgcatacttgtgtgttctttttagatctaagagatggttccgtcaatcgtgtattatacccattatgtgagaatgagaactttctgggtatgcatagttatcctgagaccttgatttccttaaaagattatggcaatttggaggatgctcatgaagtgattgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

434

Amino Acids

49.76

Weight (kDa)

6.7

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 1139
AclWI GGATC 2 cut(s) 414, 946
AcoI YGGCCR 1 cut(s) 945
AcsI RAATTY 1 cut(s) 662
AfaI GTAC 2 cut(s) 498, 689
AgsI TTSAA 4 cut(s) 225, 571, 611, 853
AjnI CCWGG 1 cut(s) 976
AluBI AGCT 5 cut(s) 49, 209, 277, 638, 900
AluI AGCT 5 cut(s) 49, 209, 277, 638, 900
Alw26I GTCTC 3 cut(s) 85, 950, 1238
AlwI GGATC 2 cut(s) 414, 946
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 1 cut(s) 945
ApeKI GCWGC 5 cut(s) 46, 209, 212, 215, 635
ApoI RAATTY 1 cut(s) 662
AseI ATTAAT 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 838
AsuC2I CCSGG 2 cut(s) 782, 1095
AsuHPI GGTGA 3 cut(s) 641, 683, 966
BaeGI GKGCMC 1 cut(s) 722
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BalI TGGCCA 1 cut(s) 947
BbvI GCAGC 5 cut(s) 58, 196, 199, 202, 647
BccI CCATC 2 cut(s) 46, 1166
BciT130I CCWGG 1 cut(s) 978
BcnI CCSGG 2 cut(s) 782, 1095
BcoDI GTCTC 3 cut(s) 85, 950, 1238
BfaI CTAG 2 cut(s) 110, 171
BglII AGATCT 1 cut(s) 1162
BisI GCNGC 6 cut(s) 47, 198, 210, 213, 216, 636
BlsI GCNGC 6 cut(s) 48, 199, 211, 214, 217, 637
BmcAI AGTACT 1 cut(s) 689
Bme1390I CCNGG 3 cut(s) 782, 978, 1095
BmiI GGNNCC 2 cut(s) 479, 1177
BmrFI CCNGG 3 cut(s) 782, 978, 1095
BmsI GCATC 2 cut(s) 882, 1273
BpuMI CCSGG 2 cut(s) 782, 1095
Bsa29I ATCGAT 1 cut(s) 66
BsaBI GATNNNNATC 2 cut(s) 648, 1087
BsaI GGTCTC 1 cut(s) 1238
BsaJI CCNNGG 1 cut(s) 1094
Bse1I ACTGG 2 cut(s) 78, 303
Bse8I GATNNNNATC 2 cut(s) 648, 1087
BseBI CCWGG 1 cut(s) 978
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 1094
BseGI GGATG 3 cut(s) 649, 873, 1288
BseJI GATNNNNATC 2 cut(s) 648, 1087
BseMII CTCAG 2 cut(s) 923, 1233
BseNI ACTGG 2 cut(s) 78, 303
BseRI GAGGAG 2 cut(s) 40, 873
BseSI GKGCMC 1 cut(s) 722
BseXI GCAGC 5 cut(s) 58, 196, 199, 202, 647
BshFI GGCC 1 cut(s) 947
BshVI ATCGAT 1 cut(s) 66
BsiSI CCGG 2 cut(s) 782, 1094
BsmAI GTCTC 3 cut(s) 85, 950, 1238
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 1 cut(s) 947
Bso31I GGTCTC 1 cut(s) 1238
Bsp1286I GDGCHC 1 cut(s) 722
Bsp143I GATC 3 cut(s) 419, 938, 1162
BspACI CCGC 2 cut(s) 198, 1139
BspANI GGCC 1 cut(s) 947
BspCNI CTCAG 2 cut(s) 924, 1234
BspDI ATCGAT 1 cut(s) 66
BspHI TCATGA 3 cut(s) 589, 771, 1288
BspLI GGNNCC 2 cut(s) 479, 1177
BspPI GGATC 2 cut(s) 414, 946
BspQI GCTCTTC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 1238
BsrI ACTGG 2 cut(s) 78, 303
BssECI CCNNGG 1 cut(s) 1094
BssMI GATC 3 cut(s) 419, 938, 1162
Bst2UI CCWGG 1 cut(s) 978
Bst4CI ACNGT 1 cut(s) 692
Bst6I CTCTTC 2 cut(s) 5, 855
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 5 cut(s) 132, 455, 932, 1166, 1242
BstF5I GGATG 3 cut(s) 649, 873, 1288
BstKTI GATC 3 cut(s) 422, 941, 1165
BstMAI GTCTC 3 cut(s) 85, 950, 1238
BstMBI GATC 3 cut(s) 419, 938, 1162
BstMWI GCNNNNNNNGC 2 cut(s) 206, 215
BstNI CCWGG 1 cut(s) 978
BstSCI CCNGG 3 cut(s) 780, 976, 1093
BstSLI GKGCMC 1 cut(s) 722
BstV1I GCAGC 5 cut(s) 58, 196, 199, 202, 647
BstX2I RGATCY 3 cut(s) 419, 938, 1162
BstYI RGATCY 3 cut(s) 419, 938, 1162
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 1 cut(s) 947
BsuTUI ATCGAT 1 cut(s) 66
BtgZI GCGATG 2 cut(s) 45, 285
BtsCI GGATG 3 cut(s) 649, 873, 1288
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 4 cut(s) 71, 287, 288, 296
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 1 cut(s) 212
CciI TCATGA 3 cut(s) 589, 771, 1288
ClaI ATCGAT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 497, 688
CviAII CATG 6 cut(s) 255, 590, 729, 772, 1109, 1289
CviQI GTAC 2 cut(s) 497, 688
DdeI CTNAG 5 cut(s) 132, 455, 932, 1166, 1242
DpnI GATC 3 cut(s) 421, 940, 1164
DpnII GATC 3 cut(s) 419, 938, 1162
DraI TTTAAA 1 cut(s) 1014
EaeI YGGCCR 1 cut(s) 945
Eam1104I CTCTTC 2 cut(s) 5, 855
EarI CTCTTC 2 cut(s) 5, 855
Eco31I GGTCTC 1 cut(s) 1238
Eco32I GATATC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 976
EcoRV GATATC 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 1233
FaeI CATG 6 cut(s) 258, 593, 732, 775, 1112, 1292
FatI CATG 6 cut(s) 254, 589, 728, 771, 1108, 1288
Fnu4HI GCNGC 6 cut(s) 47, 198, 210, 213, 216, 636
FokI GGATG 3 cut(s) 656, 860, 1295
Fsp4HI GCNGC 6 cut(s) 47, 198, 210, 213, 216, 636
FspBI CTAG 2 cut(s) 110, 171
GluI GCNGC 6 cut(s) 47, 198, 210, 213, 216, 636
HaeIII GGCC 1 cut(s) 947
HapII CCGG 2 cut(s) 782, 1094
Hin1II CATG 6 cut(s) 258, 593, 732, 775, 1112, 1292
HincII GTYRAC 1 cut(s) 813
HindII GTYRAC 1 cut(s) 813
HinfI GANTC 4 cut(s) 221, 593, 649, 725
HpaII CCGG 2 cut(s) 782, 1094
HphI GGTGA 3 cut(s) 641, 683, 966
Hpy166II GTNNAC 2 cut(s) 154, 813
Hpy188I TCNGA 4 cut(s) 424, 598, 933, 1066
Hpy188III TCNNGA 6 cut(s) 171, 590, 772, 853, 1241, 1289
Hpy8I GTNNAC 2 cut(s) 154, 813
HpyAV CCTTC 1 cut(s) 577
HpyCH4III ACNGT 1 cut(s) 692
HpyCH4IV ACGT 1 cut(s) 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 215
HpyF3I CTNAG 5 cut(s) 132, 455, 932, 1166, 1242
HpySE526I ACGT 1 cut(s) 890
Hsp92II CATG 6 cut(s) 258, 593, 732, 775, 1112, 1292
Kzo9I GATC 3 cut(s) 419, 938, 1162
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 27, 483
Lsp1109I GCAGC 5 cut(s) 58, 196, 199, 202, 647
LweI GCATC 2 cut(s) 882, 1273
MaeI CTAG 2 cut(s) 110, 171
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 6 cut(s) 105, 283, 351, 372, 583, 1127
MalI GATC 3 cut(s) 421, 940, 1164
MboI GATC 3 cut(s) 419, 938, 1162
MboII GAAGA 5 cut(s) 19, 22, 872, 954, 957
MflI RGATCY 3 cut(s) 419, 938, 1162
MhlI GDGCHC 1 cut(s) 722
MlsI TGGCCA 1 cut(s) 947
MluCI AATT 7 cut(s) 202, 339, 611, 662, 837, 1132, 1273
MluNI TGGCCA 1 cut(s) 947
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 1 cut(s) 744
Mox20I TGGCCA 1 cut(s) 947
Mph1103I ATGCAT 1 cut(s) 1233
MroXI GAANNNNTTC 1 cut(s) 838
MscI TGGCCA 1 cut(s) 947
MseI TTAA 9 cut(s) 143, 261, 320, 443, 666, 846, 893, 1013, 1259
MslI CAYNNNNRTG 3 cut(s) 360, 381, 1146
Msp20I TGGCCA 1 cut(s) 947
MspA1I CMGCKG 2 cut(s) 49, 209
MspI CCGG 2 cut(s) 782, 1094
MspR9I CCNGG 3 cut(s) 782, 978, 1095
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 1 cut(s) 978
MwoI GCNNNNNNNGC 2 cut(s) 206, 215
NciI CCSGG 2 cut(s) 782, 1095
NdeII GATC 3 cut(s) 419, 938, 1162
NlaIII CATG 6 cut(s) 258, 593, 732, 775, 1112, 1292
NlaIV GGNNCC 2 cut(s) 479, 1177
NmuCI GTSAC 5 cut(s) 105, 283, 351, 372, 1127
NsiI ATGCAT 1 cut(s) 1233
PagI TCATGA 3 cut(s) 589, 771, 1288
PciSI GCTCTTC 1 cut(s) 5
PctI GAATGC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 838
PfeI GAWTC 3 cut(s) 221, 593, 649
PkrI GCNGC 6 cut(s) 48, 199, 211, 214, 217, 637
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
PshBI ATTAAT 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 976
PspGI CCWGG 1 cut(s) 976
PspN4I GGNNCC 2 cut(s) 479, 1177
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 3 cut(s) 419, 938, 1162
PvuII CAGCTG 2 cut(s) 49, 209
RsaI GTAC 2 cut(s) 498, 689
RsaNI GTAC 2 cut(s) 497, 688
RseI CAYNNNNRTG 3 cut(s) 360, 381, 1146
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 9 cut(s) 143, 261, 320, 443, 666, 846, 893, 1013, 1259
SatI GCNGC 6 cut(s) 47, 198, 210, 213, 216, 636
Sau3AI GATC 3 cut(s) 419, 938, 1162
ScaI AGTACT 1 cut(s) 689
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 3 cut(s) 782, 978, 1095
SduI GDGCHC 1 cut(s) 722
SfaNI GCATC 2 cut(s) 882, 1273
SmiMI CAYNNNNRTG 3 cut(s) 360, 381, 1146
Sse9I AATT 7 cut(s) 202, 339, 611, 662, 837, 1132, 1273
SsiI CCGC 2 cut(s) 198, 1139
SspI AATATT 1 cut(s) 1116
SspMI CTAG 2 cut(s) 110, 171
StyD4I CCNGG 3 cut(s) 780, 976, 1093
TaaI ACNGT 1 cut(s) 692
TaiI ACGT 1 cut(s) 893
TaqI TCGA 4 cut(s) 66, 78, 121, 902
TasI AATT 7 cut(s) 202, 339, 611, 662, 837, 1132, 1273
TatI WGTACW 1 cut(s) 687
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 3 cut(s) 221, 593, 649
Tru1I TTAA 9 cut(s) 143, 261, 320, 443, 666, 846, 893, 1013, 1259
Tru9I TTAA 9 cut(s) 143, 261, 320, 443, 666, 846, 893, 1013, 1259
TscAI CASTG 4 cut(s) 78, 288, 294, 303
TseFI GTSAC 5 cut(s) 105, 283, 351, 372, 1127
TseI GCWGC 5 cut(s) 46, 209, 212, 215, 635
Tsp45I GTSAC 5 cut(s) 105, 283, 351, 372, 1127
TspDTI ATGAA 5 cut(s) 593, 606, 788, 957, 1305
TspGWI ACGGA 1 cut(s) 1168
TspRI CASTG 4 cut(s) 78, 288, 294, 303
VspI ATTAAT 1 cut(s) 443
XapI RAATTY 1 cut(s) 662
XbaI TCTAGA 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 838
XspI CTAG 2 cut(s) 110, 171
ZrmI AGTACT 1 cut(s) 689
Zsp2I ATGCAT 1 cut(s) 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.