Rroxscaffold_6G00401620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000125
Physical Location & Seq
Forward (+)
24003421 .. 24004513
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401620.1

Sequence Viewer

Length: 864 bp
ATGAGCCGGTGCAGCAGCAATGCAAAGTTGATGGACCTACCGATTGATATCCTCATCAACATCCTTTTGAGACTGCCGGCAAAATCACTTTGCTGCGCACAATGCTTCTGTAAAACCCTGCTTCACATAGTTGAAGCTCGTTCTTTTGCAACACTAGTGCATCTGCGCTTGCTTACTACTGCTTCTGATGCAGTTGCTGAAGTGCTTCAACTTTTGCTTCTTAATGTTGCTCAAGATGGTGACAATGGAAGCTTAAGAACGATCTCTCCATCACAGATATATGATGGCAATGACTTGACAAAAAGCCGACATGCCATTGTCTCAAAAATTGCATCCTGCCGATATGATTACAATGTTGGTTTTGTTTTCTGCCACTTGTTCTTCTTTACGGACAAAAAGTATGATCGAGGTCCATGCTTCATTTTCAACCCTCTCAGGGGAGAAGTTCTCATGCTCCCAACGAGTAAGGTCCAAGTTCCACCCTCTTGTAGAAATATGCTGTTCACAGATTGGTACGGAATGGGTTTTGATGATATAACCAGCACCTACATGCAAGTTTGTTCGTGTTTCCGGAAATGCACAATGCTGTTTGGTGGCCCAAGTTTATGTGTTAGGCATCAGCTCATGGAAACGGATAAGCTCAGTTCCTCCATTTATGAGAAGAAAGAGTGGGTGCGAGATTACAGCGTGAATCTCGAACTGCCTGATGTAGAGCGTCCTGGTACTTGCATTGGTGAGTGGGAGCATGGCATATTTTTCGTAGAATTTTATGTTGCTACTAACGCATTCTTTGTGGATACAAGATGTGATTCTGTGGAACGTGTATCACTTGGAGGTTCAGAGTATACGAGGATCTTCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

287

Amino Acids

32.55

Weight (kDa)

6.31

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 47 6.3e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 97
AccI GTMKAC 1 cut(s) 845
AccIII TCCGGA 1 cut(s) 570
AclWI GGATC 1 cut(s) 860
AcsI RAATTY 1 cut(s) 764
AcuI CTGAAG 2 cut(s) 219, 841
AfaI GTAC 2 cut(s) 515, 724
AfiI CCNNNNNNNGG 2 cut(s) 436, 437
AflII CTTAAG 1 cut(s) 253
AflIII ACRYGT 1 cut(s) 820
AgsI TTSAA 3 cut(s) 134, 209, 427
AhlI ACTAGT 1 cut(s) 154
AjnI CCWGG 1 cut(s) 718
AloI GAACNNNNNNTCC 2 cut(s) 250, 282
AluBI AGCT 5 cut(s) 137, 252, 622, 640, 861
AluI AGCT 5 cut(s) 137, 252, 622, 640, 861
Alw26I GTCTC 2 cut(s) 64, 325
AlwI GGATC 1 cut(s) 860
AlwNI CAGNNNCTG 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 570
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 3 cut(s) 12, 15, 93
ApoI RAATTY 1 cut(s) 764
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 2 cut(s) 98, 168
AspS9I GGNCC 4 cut(s) 34, 410, 469, 596
AsuHPI GGTGA 2 cut(s) 251, 746
AvaII GGWCC 3 cut(s) 34, 410, 469
BbvI GCAGC 3 cut(s) 24, 27, 80
BccI CCATC 4 cut(s) 25, 230, 277, 278
BcgI CGANNNNNNTGC 4 cut(s) 396, 430, 739, 773
BciT130I CCWGG 1 cut(s) 720
BciVI GTATCC 1 cut(s) 790
BcoDI GTCTC 2 cut(s) 64, 325
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 2 cut(s) 155, 862
BfrI CTTAAG 1 cut(s) 253
BfuI GTATCC 1 cut(s) 790
BisI GCNGC 3 cut(s) 13, 16, 94
BlsI GCNGC 3 cut(s) 14, 17, 95
Bme1390I CCNGG 1 cut(s) 720
Bme18I GGWCC 3 cut(s) 34, 410, 469
BmgT120I GGNCC 4 cut(s) 34, 410, 469, 596
BmrFI CCNGG 1 cut(s) 720
BmsI GCATC 4 cut(s) 169, 178, 341, 625
BplI GAGNNNNNCTC 2 cut(s) 432, 464
BpuEI CTTGAG 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 570
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 2 cut(s) 436, 437
Bse118I RCCGGY 2 cut(s) 6, 76
Bse3DI GCAATG 2 cut(s) 25, 295
Bse8I GATNNNNATC 1 cut(s) 47
BseAI TCCGGA 1 cut(s) 570
BseBI CCWGG 1 cut(s) 720
BseGI GGATG 2 cut(s) 60, 332
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 436, 437
BseMI GCAATG 2 cut(s) 25, 295
BseMII CTCAG 2 cut(s) 448, 655
BseXI GCAGC 3 cut(s) 24, 27, 80
BsgI GTGCAG 1 cut(s) 31
BshFI GGCC 1 cut(s) 597
BsiSI CCGG 3 cut(s) 7, 77, 571
BslI CCNNNNNNNGG 2 cut(s) 436, 437
BsmAI GTCTC 2 cut(s) 64, 325
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 1 cut(s) 597
Bsp13I TCCGGA 1 cut(s) 570
Bsp143I GATC 3 cut(s) 261, 403, 852
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 2 cut(s) 447, 654
BspEI TCCGGA 1 cut(s) 570
BspPI GGATC 1 cut(s) 860
BspTI CTTAAG 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 25, 295
BsrFI RCCGGY 2 cut(s) 6, 76
BssAI RCCGGY 2 cut(s) 6, 76
BssMI GATC 3 cut(s) 261, 403, 852
BssNAI GTATAC 1 cut(s) 846
Bst1107I GTATAC 1 cut(s) 846
Bst2UI CCWGG 1 cut(s) 720
BstAFI CTTAAG 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 78, 170
BstDEI CTNAG 2 cut(s) 434, 641
BstF5I GGATG 2 cut(s) 60, 332
BstHHI GCGC 2 cut(s) 98, 168
BstKTI GATC 3 cut(s) 264, 406, 855
BstMAI GTCTC 2 cut(s) 64, 325
BstMBI GATC 3 cut(s) 261, 403, 852
BstMWI GCNNNNNNNGC 4 cut(s) 12, 102, 188, 782
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 2 cut(s) 314, 553
BstSCI CCNGG 1 cut(s) 718
BstV1I GCAGC 3 cut(s) 24, 27, 80
BstX2I RGATCY 1 cut(s) 852
BstYI RGATCY 1 cut(s) 852
BstZ17I GTATAC 1 cut(s) 846
BsuI GTATCC 1 cut(s) 790
BsuRI GGCC 1 cut(s) 597
BtsCI GGATG 2 cut(s) 60, 332
Cac8I GCNNGC 2 cut(s) 78, 170
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 2 cut(s) 98, 168
Cfr10I RCCGGY 2 cut(s) 6, 76
Cfr13I GGNCC 4 cut(s) 34, 410, 469, 596
CseI GACGC 1 cut(s) 704
Csp6I GTAC 2 cut(s) 514, 723
CviAII CATG 6 cut(s) 311, 414, 451, 550, 625, 746
CviJI RGCY 8 cut(s) 6, 137, 252, 306, 597, 622, 640, 861
CviKI_1 RGCY 8 cut(s) 6, 137, 252, 306, 597, 622, 640, 861
CviQI GTAC 2 cut(s) 514, 723
DdeI CTNAG 2 cut(s) 434, 641
DpnI GATC 3 cut(s) 263, 405, 854
DpnII GATC 3 cut(s) 261, 403, 852
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 3 cut(s) 34, 410, 469
Eco57I CTGAAG 2 cut(s) 219, 841
EcoRII CCWGG 1 cut(s) 718
EcoRV GATATC 1 cut(s) 49
FaeI CATG 6 cut(s) 314, 417, 454, 553, 628, 749
FatI CATG 6 cut(s) 310, 413, 450, 549, 624, 745
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 3 cut(s) 13, 16, 94
FokI GGATG 2 cut(s) 47, 319
Fsp4HI GCNGC 3 cut(s) 13, 16, 94
FspBI CTAG 2 cut(s) 155, 862
FspI TGCGCA 1 cut(s) 97
GlaI GCGC 2 cut(s) 97, 167
GluI GCNGC 3 cut(s) 13, 16, 94
HaeIII GGCC 1 cut(s) 597
HapII CCGG 3 cut(s) 7, 77, 571
HgaI GACGC 1 cut(s) 704
HhaI GCGC 2 cut(s) 98, 168
Hin1II CATG 6 cut(s) 314, 417, 454, 553, 628, 749
Hin6I GCGC 2 cut(s) 96, 166
HinP1I GCGC 2 cut(s) 96, 166
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 2 cut(s) 691, 809
HpaII CCGG 3 cut(s) 7, 77, 571
HphI GGTGA 2 cut(s) 251, 746
Hpy166II GTNNAC 2 cut(s) 504, 846
Hpy188I TCNGA 2 cut(s) 187, 841
Hpy188III TCNNGA 3 cut(s) 233, 571, 695
Hpy8I GTNNAC 2 cut(s) 504, 846
HpyCH4IV ACGT 1 cut(s) 820
HpyCH4V TGCA 9 cut(s) 12, 23, 149, 160, 191, 332, 553, 579, 729
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 102, 188, 782
HpyF3I CTNAG 2 cut(s) 434, 641
HpySE526I ACGT 1 cut(s) 820
Hsp92II CATG 6 cut(s) 314, 417, 454, 553, 628, 749
HspAI GCGC 2 cut(s) 96, 166
Kpn2I TCCGGA 1 cut(s) 570
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 3 cut(s) 261, 403, 852
LmnI GCTCC 2 cut(s) 459, 742
Lsp1109I GCAGC 3 cut(s) 24, 27, 80
LweI GCATC 4 cut(s) 169, 178, 341, 625
MaeI CTAG 2 cut(s) 155, 862
MaeII ACGT 1 cut(s) 820
MaeIII GTNAC 1 cut(s) 239
MalI GATC 3 cut(s) 263, 405, 854
MboI GATC 3 cut(s) 261, 403, 852
MboII GAAGA 3 cut(s) 373, 673, 847
MflI RGATCY 1 cut(s) 852
MluCI AATT 2 cut(s) 327, 764
MnlI CCTC 7 cut(s) 62, 401, 441, 493, 658, 827, 843
MroI TCCGGA 1 cut(s) 570
MroNI GCCGGC 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 2 cut(s) 222, 254
MslI CAYNNNNRTG 1 cut(s) 548
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 3 cut(s) 7, 77, 571
MspR9I CCNGG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 1 cut(s) 720
MwoI GCNNNNNNNGC 4 cut(s) 12, 102, 188, 782
NaeI GCCGGC 1 cut(s) 78
NdeII GATC 3 cut(s) 261, 403, 852
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 6 cut(s) 314, 417, 454, 553, 628, 749
NmuCI GTSAC 1 cut(s) 239
NsbI TGCGCA 1 cut(s) 97
NspI RCATGY 2 cut(s) 314, 553
PctI GAATGC 1 cut(s) 785
PdiI GCCGGC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 691, 809
PkrI GCNGC 3 cut(s) 14, 17, 95
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspPI GGNCC 4 cut(s) 34, 410, 469, 596
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 852
RsaI GTAC 2 cut(s) 515, 724
RsaNI GTAC 2 cut(s) 514, 723
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 2 cut(s) 222, 254
SatI GCNGC 3 cut(s) 13, 16, 94
Sau3AI GATC 3 cut(s) 261, 403, 852
Sau96I GGNCC 4 cut(s) 34, 410, 469, 596
ScrFI CCNGG 1 cut(s) 720
SfaNI GCATC 4 cut(s) 169, 178, 341, 625
SinI GGWCC 3 cut(s) 34, 410, 469
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 2 cut(s) 231, 253
SmoI CTYRAG 2 cut(s) 231, 253
SpeI ACTAGT 1 cut(s) 154
Sse9I AATT 2 cut(s) 327, 764
SspMI CTAG 2 cut(s) 155, 862
StyD4I CCNGG 1 cut(s) 718
TaiI ACGT 1 cut(s) 823
TaqI TCGA 2 cut(s) 406, 696
TasI AATT 2 cut(s) 327, 764
TfiI GAWTC 2 cut(s) 691, 809
Tru1I TTAA 2 cut(s) 222, 254
Tru9I TTAA 2 cut(s) 222, 254
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 3 cut(s) 12, 15, 93
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 409
TspGWI ACGGA 3 cut(s) 404, 531, 647
Vha464I CTTAAG 1 cut(s) 253
VpaK11BI GGWCC 3 cut(s) 34, 410, 469
XapI RAATTY 1 cut(s) 764
XceI RCATGY 2 cut(s) 314, 553
XmiI GTMKAC 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 2 cut(s) 155, 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.