Rh3CG263700

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000125
Physical Location & Seq
Reverse (-)
25751304 .. 25755242
3939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG263700.1

Sequence Viewer

Length: 945 bp
ATGGGTTATAACCATCGAGGTACACACTCCCTCCTTTTCAACTCGAGGGCGACATGCAAGAGAAGCGACTCTGTTGAATTCGCTGGATCAAAGGTAAACTTGCTGCGCTTGCTTACTACTGCTTCCGATGCAGTCGCTGAAGTGCCTCAACTTTTGCTTCGTAATGTTGCTCAAGATGGTGACAATGGAAGCTTAATAACAATATCTCCATCACAGATATATGATGGCAATGTCTTGACCAAAAGCAGACATGCCATTGTCTCAAAGGTTGCATCCTGCCGATATGATTACAATATTGGTTTTGTTTTTTGCAACTTGTTCTTCTTTAAGGACAAAAAGTATGATCGAGGTCCATGCTTCATTTTCAACCCTCTCAGGGGAGAATTTCTCATGCTCCCAATGAGTAAGGTCCAAGTTCCACCCTCTTGTAGAAATAAGATATTCATAGATTGGTACGGCATGGGTTTTGATGATATAACTAGCACCTACAAGATTGTTCGTGTTTCTGGAAAGGCACAATGCTGTTTGGTGGCCCAAGTTTATGCATTAGGCACCAGCTCATGGAAATGGATAAGCTCAGTTCCTCCATGTAATTTAAGCACAGAAAATATATCTACATATGGAGACCTGCATTGGTTAATTAATCGCTCAAGTACTGGAGGACAAATCTGCATAGTTTCTTTTGACTTCAAGAAGGAGGAGTTCTATTTGATGCCTCATCCCACATTAAGAAAGCAAGAATATTCTTTCTTGTCCCTTCGCTTTGTTAATTTGAGAGGATCTATGGCAATTGTTGATACTTCATCACATACACATATTGACATGTGGGTTTTGAAGAGTTATGAGAAGAAAGAGTGGGTGCAAGATTACAGCGTGAATCTCGAACTGCCTGATGTAGAGCGTCCTGGTACTTGCATTGGTGAGTGGAGCATGGCATATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

314

Amino Acids

35.72

Weight (kDa)

8.6

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 79 - 289 5.9e-25 F-box associated beta propeller domain
FBA_1 PF07734 96 - 288 1.3e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
Acc36I ACCTGC 1 cut(s) 636
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 561
AclWI GGATC 2 cut(s) 94, 787
AcsI RAATTY 2 cut(s) 77, 383
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 4 cut(s) 22, 455, 655, 910
AfiI CCNNNNNNNGG 3 cut(s) 376, 377, 561
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 5 cut(s) 40, 77, 367, 691, 835
AjnI CCWGG 1 cut(s) 904
AluBI AGCT 3 cut(s) 192, 558, 576
AluI AGCT 3 cut(s) 192, 558, 576
Alw26I GTCTC 2 cut(s) 265, 618
AlwI GGATC 2 cut(s) 94, 787
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 77, 383
AseI ATTAAT 1 cut(s) 642
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 3 cut(s) 350, 409, 532
AsuHPI GGTGA 2 cut(s) 191, 932
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 2 cut(s) 350, 409
BanI GGYRCC 1 cut(s) 551
BbvI GCAGC 1 cut(s) 90
BccI CCATC 4 cut(s) 21, 170, 217, 218
BceAI ACGGC 1 cut(s) 472
BcgI CGANNNNNNTGC 2 cut(s) 336, 370
BciT130I CCWGG 1 cut(s) 906
BcoDI GTCTC 2 cut(s) 265, 618
BfaI CTAG 1 cut(s) 480
BfuAI ACCTGC 1 cut(s) 636
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmcAI AGTACT 1 cut(s) 655
Bme1390I CCNGG 1 cut(s) 906
Bme18I GGWCC 2 cut(s) 350, 409
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 3 cut(s) 350, 409, 532
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 1 cut(s) 906
BmsI GCATC 3 cut(s) 118, 281, 702
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BpmI CTGGAG 1 cut(s) 678
BpuEI CTTGAG 2 cut(s) 156, 634
BsaI GGTCTC 1 cut(s) 618
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 190, 220
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 377, 561
Bse1I ACTGG 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 906
BseGI GGATG 2 cut(s) 272, 718
BseLI CCNNNNNNNGG 3 cut(s) 376, 377, 561
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 388, 591
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 1 cut(s) 713
BseXI GCAGC 1 cut(s) 90
BshFI GGCC 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 739
BslI CCNNNNNNNGG 3 cut(s) 376, 377, 561
BsmAI GTCTC 2 cut(s) 265, 618
BsmFI GGGAC 1 cut(s) 739
BsnI GGCC 1 cut(s) 533
Bso31I GGTCTC 1 cut(s) 618
BsoBI CYCGRG 1 cut(s) 43
Bsp143I GATC 3 cut(s) 86, 343, 779
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 2 cut(s) 387, 590
BspLI GGNNCC 1 cut(s) 553
BspMI ACCTGC 1 cut(s) 636
BspPI GGATC 2 cut(s) 94, 787
BspT107I GGYRCC 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 661
BssMI GATC 3 cut(s) 86, 343, 779
Bst2UI CCWGG 1 cut(s) 906
Bst6I CTCTTC 1 cut(s) 830
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 374, 577
BstF5I GGATG 2 cut(s) 272, 718
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 3 cut(s) 89, 346, 782
BstMAI GTCTC 2 cut(s) 265, 618
BstMBI GATC 3 cut(s) 86, 343, 779
BstMWI GCNNNNNNNGC 3 cut(s) 63, 109, 128
BstNI CCWGG 1 cut(s) 906
BstNSI RCATGY 3 cut(s) 57, 254, 826
BstSCI CCNGG 1 cut(s) 904
BstV1I GCAGC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 779
BstYI RGATCY 1 cut(s) 779
BsuRI GGCC 1 cut(s) 533
BtsCI GGATG 2 cut(s) 272, 718
BveI ACCTGC 1 cut(s) 636
Cac8I GCNNGC 1 cut(s) 110
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 3 cut(s) 350, 409, 532
CseI GACGC 1 cut(s) 890
Csp6I GTAC 4 cut(s) 21, 454, 654, 909
CviAII CATG 9 cut(s) 54, 251, 354, 391, 460, 561, 588, 823, 931
CviJI RGCY 4 cut(s) 192, 533, 558, 576
CviKI_1 RGCY 4 cut(s) 192, 533, 558, 576
CviQI GTAC 4 cut(s) 21, 454, 654, 909
DdeI CTNAG 2 cut(s) 374, 577
DpnI GATC 3 cut(s) 88, 345, 781
DpnII GATC 3 cut(s) 86, 343, 779
Eam1104I CTCTTC 1 cut(s) 830
EarI CTCTTC 1 cut(s) 830
Eco31I GGTCTC 1 cut(s) 618
Eco47I GGWCC 2 cut(s) 350, 409
Eco57I CTGAAG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 904
EcoT22I ATGCAT 1 cut(s) 547
FaeI CATG 9 cut(s) 57, 254, 357, 394, 463, 564, 591, 826, 934
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 1 cut(s) 739
FatI CATG 9 cut(s) 53, 250, 353, 390, 459, 560, 587, 822, 930
FauNDI CATATG 1 cut(s) 619
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 2 cut(s) 259, 705
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 480
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 1 cut(s) 533
HgaI GACGC 1 cut(s) 890
HhaI GCGC 1 cut(s) 108
Hin1II CATG 9 cut(s) 57, 254, 357, 394, 463, 564, 591, 826, 934
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 2 cut(s) 68, 877
HphI GGTGA 2 cut(s) 191, 932
Hpy166II GTNNAC 2 cut(s) 23, 97
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 5 cut(s) 173, 235, 507, 691, 881
Hpy8I GTNNAC 2 cut(s) 23, 97
HpyAV CCTTC 2 cut(s) 688, 767
HpyCH4V TGCA 9 cut(s) 57, 131, 272, 312, 545, 631, 672, 862, 915
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 109, 128
HpyF3I CTNAG 2 cut(s) 374, 577
Hsp92II CATG 9 cut(s) 57, 254, 357, 394, 463, 564, 591, 826, 934
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 86, 343, 779
LmnI GCTCC 2 cut(s) 399, 927
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 3 cut(s) 118, 281, 702
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 88, 345, 781
MboI GATC 3 cut(s) 86, 343, 779
MboII GAAGA 3 cut(s) 313, 847, 859
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 1 cut(s) 779
MluCI AATT 6 cut(s) 77, 383, 592, 639, 769, 789
MlyI GAGTC 1 cut(s) 62
Mph1103I ATGCAT 1 cut(s) 547
MseI TTAA 7 cut(s) 194, 327, 596, 638, 642, 728, 768
MslI CAYNNNNRTG 1 cut(s) 565
MspR9I CCNGG 1 cut(s) 906
MunI CAATTG 1 cut(s) 789
MvaI CCWGG 1 cut(s) 906
MwoI GCNNNNNNNGC 3 cut(s) 63, 109, 128
NdeI CATATG 1 cut(s) 619
NdeII GATC 3 cut(s) 86, 343, 779
NlaIII CATG 9 cut(s) 57, 254, 357, 394, 463, 564, 591, 826, 934
NlaIV GGNNCC 1 cut(s) 553
NmuCI GTSAC 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 3 cut(s) 57, 254, 826
PacI TTAATTAA 1 cut(s) 642
PaeR7I CTCGAG 1 cut(s) 43
PciI ACATGT 1 cut(s) 822
PfeI GAWTC 1 cut(s) 877
PflMI CCANNNNNTGG 1 cut(s) 561
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PscI ACATGT 1 cut(s) 822
PshBI ATTAAT 1 cut(s) 642
PsiI TTATAA 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 904
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 1 cut(s) 553
PspPI GGNCC 3 cut(s) 350, 409, 532
PspXI VCTCGAGB 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 779
RsaI GTAC 4 cut(s) 22, 455, 655, 910
RsaNI GTAC 4 cut(s) 21, 454, 654, 909
RseI CAYNNNNRTG 1 cut(s) 565
SaqAI TTAA 7 cut(s) 194, 327, 596, 638, 642, 728, 768
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 3 cut(s) 86, 343, 779
Sau96I GGNCC 3 cut(s) 350, 409, 532
ScaI AGTACT 1 cut(s) 655
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 906
SfaNI GCATC 3 cut(s) 118, 281, 702
Sfr274I CTCGAG 1 cut(s) 43
SinI GGWCC 2 cut(s) 350, 409
SlaI CTCGAG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 565
SmlI CTYRAG 3 cut(s) 43, 171, 649
SmoI CTYRAG 3 cut(s) 43, 171, 649
Sse9I AATT 6 cut(s) 77, 383, 592, 639, 769, 789
SspI AATATT 2 cut(s) 295, 743
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 904
TaqI TCGA 4 cut(s) 16, 44, 346, 882
TasI AATT 6 cut(s) 77, 383, 592, 639, 769, 789
TatI WGTACW 1 cut(s) 653
TfiI GAWTC 1 cut(s) 877
Tru1I TTAA 7 cut(s) 194, 327, 596, 638, 642, 728, 768
Tru9I TTAA 7 cut(s) 194, 327, 596, 638, 642, 728, 768
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 349, 433, 792
Van91I CCANNNNNTGG 1 cut(s) 561
VpaK11BI GGWCC 2 cut(s) 350, 409
VspI ATTAAT 1 cut(s) 642
XapI RAATTY 2 cut(s) 77, 383
XceI RCATGY 3 cut(s) 57, 254, 826
XhoI CTCGAG 1 cut(s) 43
XspI CTAG 1 cut(s) 480
ZrmI AGTACT 1 cut(s) 655
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.