RLG00000031177

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000125
Physical Location & Seq
Forward (+)
2715257 .. 2716628
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031177

Sequence Viewer

Length: 1005 bp
ATGAGGCTGAACAGCTGCCACACACTGTTACTAGACCTACCCCTTCCTATCGTGATCGAAAGCCTTTCGAGACTGCCCTCTGAATTAGTCTGTTGCATCCGGTGCATGTCTAAGGCCGTGTTAAATATGGTTGATGACCTCTCTTTTGTTGCAGTGCACACCCGTTTTCTTATCGCCACCAACGCTGTTGCTCAAGTACCTCAACTCATGTCTTTTGCTGCATTGTTTCCCTCTGAGCGTGGTGGAGTGATAGCAGACTTGCAACCCCTCAAGTTTGACGACAGTGCCTTGACAACAAGAGGAAGATATGCAATTAATGTCTCCACATCACGCCCGTCCGATTGCCCAACTTACATGGTAGATTTTGTTTTCTGCAATTTGATTTGCTTCAGAAATATAAATAATTGTGGACAAGGAGTTTGCTTCTTAATCGATCTTTGTAGGAGACAAGTTCTAAGGCTTCCTAAGAATGACATTACCAAAAATGCAAAGTCTCCAATATTCTGTGACTGGTATGGTATGGGGTTTGATAGTATTACCAATACCCTCAAGATTATTCGTGTTACAAAATTTGATGCAGCACACTGCATGGTAGCTCAAGTTCTTGTACTAGGGAAAAGCTCGTGGCGACAGATATCCTCAGCTCCTCTTTGTTATCTGTCCGCTATTTATGTTACTTGTGATGCATGGGAGCATGGCATATTTTTCAAAAACTTTGAGAATATGCCTGCATTCTTTTTCGATCTAAGATCTGCTCTCATGAATCCAGTAAGATGTGAGAGTGGGATCCGTACCAAAATCTTTAGCTACACACGGAGCTTTATATCCTTGAAAGACTATGACATTTTGGTTGAAGCTGAACAAGGCACTGGAAGTCTTAAAAGTTATGTTAATTTGATGGAAGAAGAAGCACAAGGATTTAGCTTATGTAAGAGACACGTGCTGCGCGGAGTTTCTTTAATCCAAGAAGGTAACAATGACATAGTACACCGAGCTTCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

335

Amino Acids

37.52

Weight (kDa)

8.3

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 948
AciI CCGC 2 cut(s) 663, 948
AclWI GGATC 2 cut(s) 781, 794
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 2 cut(s) 373, 981
AcvI CACGTG 1 cut(s) 940
AfaI GTAC 4 cut(s) 198, 609, 793, 987
AflIII ACRYGT 1 cut(s) 937
AgsI TTSAA 3 cut(s) 709, 832, 854
AluBI AGCT 9 cut(s) 15, 596, 621, 644, 807, 819, 857, 924, 995
AluI AGCT 9 cut(s) 15, 596, 621, 644, 807, 819, 857, 924, 995
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 5 cut(s) 64, 325, 439, 498, 928
Alw44I GTGCAC 1 cut(s) 155
AlwI GGATC 2 cut(s) 781, 794
AoxI GGCC 1 cut(s) 114
ApaLI GTGCAC 1 cut(s) 155
ApeKI GCWGC 4 cut(s) 15, 218, 578, 943
ApoI RAATTY 1 cut(s) 569
ArsI GACNNNNNNTTYG 4 cut(s) 128, 160, 402, 434
AseI ATTAAT 1 cut(s) 315
AspLEI GCGC 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 159
BamHI GGATCC 1 cut(s) 786
BauI CACGAG 1 cut(s) 622
BbrPI CACGTG 1 cut(s) 940
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 640
BbvI GCAGC 4 cut(s) 2, 205, 590, 930
BccI CCATC 1 cut(s) 892
BceAI ACGGC 1 cut(s) 101
BcoDI GTCTC 5 cut(s) 64, 325, 439, 498, 928
BfaI CTAG 3 cut(s) 32, 611, 1003
BglII AGATCT 1 cut(s) 749
BisI GCNGC 4 cut(s) 16, 219, 579, 944
BlsI GCNGC 4 cut(s) 17, 220, 580, 945
BmiI GGNNCC 1 cut(s) 788
BmsI GCATC 3 cut(s) 105, 565, 673
Bpu10I CCTNAGC 1 cut(s) 640
BpuEI CTTGAG 4 cut(s) 177, 254, 533, 582
Bsa29I ATCGAT 1 cut(s) 432
BsaAI YACGTR 1 cut(s) 940
BsaWI WCCGGW 1 cut(s) 99
Bse1I ACTGG 3 cut(s) 515, 767, 874
BseCI ATCGAT 1 cut(s) 432
BseGI GGATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 225, 654
BseNI ACTGG 3 cut(s) 515, 767, 874
BseRI GAGGAG 1 cut(s) 636
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 4 cut(s) 2, 205, 590, 930
Bsh1236I CGCG 1 cut(s) 948
BshFI GGCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 100
BsmAI GTCTC 5 cut(s) 64, 325, 439, 498, 928
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 5 cut(s) 54, 433, 742, 749, 786
BspACI CCGC 2 cut(s) 663, 948
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 2 cut(s) 226, 653
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 1 cut(s) 948
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 1 cut(s) 788
BspPI GGATC 2 cut(s) 781, 794
BsrI ACTGG 3 cut(s) 515, 767, 874
BssMI GATC 5 cut(s) 54, 433, 742, 749, 786
BssSI CACGAG 1 cut(s) 622
Bst2BI CACGAG 1 cut(s) 622
Bst4CI ACNGT 2 cut(s) 27, 284
BstAPI GCANNNNNTGC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 940
BstC8I GCNNGC 1 cut(s) 729
BstDEI CTNAG 6 cut(s) 111, 234, 455, 465, 640, 746
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 948
BstHHI GCGC 1 cut(s) 948
BstKTI GATC 5 cut(s) 57, 436, 745, 752, 789
BstMAI GTCTC 5 cut(s) 64, 325, 439, 498, 928
BstMBI GATC 5 cut(s) 54, 433, 742, 749, 786
BstMWI GCNNNNNNNGC 2 cut(s) 102, 182
BstNSI RCATGY 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 4 cut(s) 2, 205, 590, 930
BstX2I RGATCY 2 cut(s) 749, 786
BstYI RGATCY 2 cut(s) 749, 786
Bsu15I ATCGAT 1 cut(s) 432
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 432
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 2 cut(s) 159, 583
BtsIMutI CAGTG 5 cut(s) 23, 159, 289, 583, 867
Cac8I GCNNGC 1 cut(s) 729
CciI TCATGA 1 cut(s) 759
CfoI GCGC 1 cut(s) 948
ClaI ATCGAT 1 cut(s) 432
Csp6I GTAC 4 cut(s) 197, 608, 792, 986
CviAII CATG 7 cut(s) 106, 208, 355, 589, 687, 695, 760
CviQI GTAC 4 cut(s) 197, 608, 792, 986
DdeI CTNAG 6 cut(s) 111, 234, 455, 465, 640, 746
DpnI GATC 5 cut(s) 56, 435, 744, 751, 788
DpnII GATC 5 cut(s) 54, 433, 742, 749, 786
Eco32I GATATC 1 cut(s) 636
Eco57I CTGAAG 2 cut(s) 373, 981
Eco72I CACGTG 1 cut(s) 940
EcoRV GATATC 1 cut(s) 636
EcoT22I ATGCAT 1 cut(s) 688
FaeI CATG 7 cut(s) 109, 211, 358, 592, 690, 698, 763
FatI CATG 7 cut(s) 105, 207, 354, 588, 686, 694, 759
Fnu4HI GCNGC 4 cut(s) 16, 219, 579, 944
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 4 cut(s) 16, 219, 579, 944
FspBI CTAG 3 cut(s) 32, 611, 1003
GlaI GCGC 1 cut(s) 947
GluI GCNGC 4 cut(s) 16, 219, 579, 944
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 100
HhaI GCGC 1 cut(s) 948
Hin1II CATG 7 cut(s) 109, 211, 358, 592, 690, 698, 763
Hin6I GCGC 1 cut(s) 946
HinP1I GCGC 1 cut(s) 946
HinfI GANTC 1 cut(s) 763
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 3 cut(s) 157, 410, 988
Hpy188I TCNGA 4 cut(s) 82, 235, 340, 392
Hpy188III TCNNGA 4 cut(s) 52, 69, 550, 760
Hpy8I GTNNAC 3 cut(s) 157, 410, 988
HpyAV CCTTC 2 cut(s) 53, 962
HpyCH4III ACNGT 2 cut(s) 27, 284
HpyCH4IV ACGT 1 cut(s) 939
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 182
HpyF3I CTNAG 6 cut(s) 111, 234, 455, 465, 640, 746
HpySE526I ACGT 1 cut(s) 939
Hsp92II CATG 7 cut(s) 109, 211, 358, 592, 690, 698, 763
HspAI GCGC 1 cut(s) 946
Kzo9I GATC 5 cut(s) 54, 433, 742, 749, 786
LmnI GCTCC 3 cut(s) 649, 691, 816
LpnPI CCDG 5 cut(s) 113, 496, 741, 780, 855
Lsp1109I GCAGC 4 cut(s) 2, 205, 590, 930
LweI GCATC 3 cut(s) 105, 565, 673
MaeI CTAG 3 cut(s) 32, 611, 1003
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 5 cut(s) 27, 506, 562, 673, 971
MalI GATC 5 cut(s) 56, 435, 744, 751, 788
MboI GATC 5 cut(s) 54, 433, 742, 749, 786
MboII GAAGA 3 cut(s) 315, 914, 917
MflI RGATCY 2 cut(s) 749, 786
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 6 cut(s) 83, 312, 376, 403, 569, 892
MnlI CCTC 9 cut(s) 88, 149, 210, 241, 278, 293, 557, 649, 657
Mph1103I ATGCAT 1 cut(s) 688
MseI TTAA 6 cut(s) 122, 315, 428, 879, 891, 959
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 731
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 2 cut(s) 102, 182
NdeII GATC 5 cut(s) 54, 433, 742, 749, 786
NlaIII CATG 7 cut(s) 109, 211, 358, 592, 690, 698, 763
NlaIV GGNNCC 1 cut(s) 788
NmuCI GTSAC 1 cut(s) 506
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 1 cut(s) 109
PagI TCATGA 1 cut(s) 759
PctI GAATGC 1 cut(s) 731
PfeI GAWTC 1 cut(s) 763
PkrI GCNGC 4 cut(s) 17, 220, 580, 945
PmaCI CACGTG 1 cut(s) 940
PmlI CACGTG 1 cut(s) 940
Ppu21I YACGTR 1 cut(s) 940
PshBI ATTAAT 1 cut(s) 315
PspCI CACGTG 1 cut(s) 940
PspN4I GGNNCC 1 cut(s) 788
PsrI GAACNNNNNNTAC 2 cut(s) 585, 617
PsuI RGATCY 2 cut(s) 749, 786
PvuII CAGCTG 1 cut(s) 15
RsaI GTAC 4 cut(s) 198, 609, 793, 987
RsaNI GTAC 4 cut(s) 197, 608, 792, 986
SaqAI TTAA 6 cut(s) 122, 315, 428, 879, 891, 959
SatI GCNGC 4 cut(s) 16, 219, 579, 944
Sau3AI GATC 5 cut(s) 54, 433, 742, 749, 786
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 3 cut(s) 105, 565, 673
SmlI CTYRAG 4 cut(s) 192, 269, 548, 597
SmoI CTYRAG 4 cut(s) 192, 269, 548, 597
Sse9I AATT 6 cut(s) 83, 312, 376, 403, 569, 892
SsiI CCGC 2 cut(s) 663, 948
SspI AATATT 1 cut(s) 501
SspMI CTAG 3 cut(s) 32, 611, 1003
TaaI ACNGT 2 cut(s) 27, 284
TaiI ACGT 1 cut(s) 942
TaqI TCGA 4 cut(s) 57, 68, 432, 741
TasI AATT 6 cut(s) 83, 312, 376, 403, 569, 892
TatI WGTACW 2 cut(s) 607, 985
TfiI GAWTC 1 cut(s) 763
Tru1I TTAA 6 cut(s) 122, 315, 428, 879, 891, 959
Tru9I TTAA 6 cut(s) 122, 315, 428, 879, 891, 959
TscAI CASTG 5 cut(s) 30, 159, 289, 590, 874
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 4 cut(s) 15, 218, 578, 943
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 1 cut(s) 776
TspGWI ACGGA 2 cut(s) 779, 829
TspRI CASTG 5 cut(s) 30, 159, 289, 590, 874
VneI GTGCAC 1 cut(s) 155
VspI ATTAAT 1 cut(s) 315
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 109
XspI CTAG 3 cut(s) 32, 611, 1003
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.