Rmu_co8488687.1_g000001

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8488687.1
OG0000125
Physical Location & Seq
Forward (+)
1222 .. 2122
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8488687.1_g000001.1.cds

Sequence Viewer

Length: 834 bp
atggaggcaatggagtacgatggcgaggccttgacagcagaagaaaacaagcacgcctcgcaggttgaagagtctgaagaacatccatacttcttgtccaatcctctccgcggagaagttctaaagctcccagcaaataactttccttctcaagagaatcgttttcatctctcgtacggtatggggtttgatactataaccaacacccacaagattgtttgcatgtcctcaaattttaaagaagactacctaggggctcaagttcttgcattgggcacaaggtcatggagagagataccctctttgcctccttgttatttaggtgaacaaaagatatgcgcacatggagatatgcattggctgagtgataatgaaggattctggcagattatttctttcgacttcacgaaagaggagttctatttgactccccatcccacctcaataccttcgaatcttcttccttacatccacttacttacttggagaggatctattgccattgcgtacgcttcattattggatacgtctattaagatttgggtgttgaaaaaatatgataccaaagagtgggcatgcgcaccggattactccataagcatccgaaatgatgtagcaacatcgaagtacggactgtggcctcgattagttgctgatgaatatagttcactaacttattgtgaatgggaacatggcatatttttcatggaaaaacttggtgagaacatattctttttggatctaagaggagtttccaagaaatacccaactggtggatgtcctcggaagcatgtgaagatcgtcggctatgcttggagcttcatttccttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

277

Amino Acids

31.83

Weight (kDa)

5.48

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 832
Acc16I TGCGCA 2 cut(s) 340, 580
Acc36I ACCTGC 1 cut(s) 52
AccB7I CCANNNNNTGG 2 cut(s) 570, 773
AccII CGCG 1 cut(s) 111
AciI CCGC 2 cut(s) 109, 111
AclWI GGATC 2 cut(s) 499, 747
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 4 cut(s) 17, 176, 509, 629
AfiI CCNNNNNNNGG 3 cut(s) 110, 570, 773
AgsI TTSAA 2 cut(s) 68, 550
AluBI AGCT 2 cut(s) 127, 819
AluI AGCT 2 cut(s) 127, 819
AlwI GGATC 2 cut(s) 499, 747
AoxI GGCC 2 cut(s) 27, 638
ApoI RAATTY 1 cut(s) 232
Asp700I GAANNNNTTC 1 cut(s) 728
AspA2I CCTAGG 1 cut(s) 250
AspLEI GCGC 2 cut(s) 341, 581
AsuHPI GGTGA 2 cut(s) 335, 731
AsuII TTCGAA 1 cut(s) 452
AvrII CCTAGG 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 249
BccI CCATC 2 cut(s) 14, 441
BciVI GTATCC 1 cut(s) 517
BfaI CTAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 52
BfuI GTATCC 1 cut(s) 517
BlnI CCTAGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 609
BpiI GAAGAC 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 284, 316
Bpu14I TTCGAA 1 cut(s) 452
BpuEI CTTGAG 2 cut(s) 135, 243
BsaJI CCNNGG 3 cut(s) 109, 250, 782
BsaWI WCCGGW 1 cut(s) 583
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 570, 773
Bse1I ACTGG 1 cut(s) 775
Bse3DI GCAATG 2 cut(s) 15, 501
BseDI CCNNGG 3 cut(s) 109, 250, 782
BseGI GGATG 5 cut(s) 82, 433, 468, 600, 782
BseLI CCNNNNNNNGG 3 cut(s) 110, 570, 773
BseMI GCAATG 2 cut(s) 15, 501
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 775
BseRI GAGGAG 2 cut(s) 428, 762
BseSI GKGCMC 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 29, 640
BsiSI CCGG 1 cut(s) 584
BsiWI CGTACG 2 cut(s) 174, 507
BslI CCNNNNNNNGG 3 cut(s) 110, 570, 773
BsnI GGCC 2 cut(s) 29, 640
Bsp119I TTCGAA 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 259, 278
Bsp143I GATC 3 cut(s) 491, 739, 798
BspACI CCGC 2 cut(s) 109, 111
BspANI GGCC 2 cut(s) 29, 640
BspCNI CTCAG 1 cut(s) 354
BspFNI CGCG 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 2 cut(s) 499, 747
BspT104I TTCGAA 1 cut(s) 452
BsrDI GCAATG 2 cut(s) 15, 501
BsrI ACTGG 1 cut(s) 775
BssECI CCNNGG 3 cut(s) 109, 250, 782
BssMI GATC 3 cut(s) 491, 739, 798
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 179, 636
Bst6I CTCTTC 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 54, 577
BstDEI CTNAG 2 cut(s) 362, 743
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 5 cut(s) 82, 433, 468, 600, 782
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 2 cut(s) 341, 581
BstKTI GATC 3 cut(s) 494, 742, 801
BstMBI GATC 3 cut(s) 491, 739, 798
BstMWI GCNNNNNNNGC 2 cut(s) 35, 58
BstNSI RCATGY 3 cut(s) 226, 579, 794
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 2 cut(s) 491, 739
BstYI RGATCY 2 cut(s) 491, 739
BsuI GTATCC 1 cut(s) 517
BsuRI GGCC 2 cut(s) 29, 640
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 5 cut(s) 82, 433, 468, 600, 782
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 54, 577
CfoI GCGC 2 cut(s) 341, 581
Cfr42I CCGCGG 1 cut(s) 112
Csp6I GTAC 4 cut(s) 16, 175, 508, 628
CviAII CATG 7 cut(s) 223, 285, 344, 576, 692, 706, 791
CviJI RGCY 7 cut(s) 29, 127, 257, 361, 640, 807, 819
CviKI_1 RGCY 7 cut(s) 29, 127, 257, 361, 640, 807, 819
CviQI GTAC 4 cut(s) 16, 175, 508, 628
DdeI CTNAG 2 cut(s) 362, 743
DpnI GATC 3 cut(s) 493, 741, 800
DpnII GATC 3 cut(s) 491, 739, 798
DraI TTTAAA 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 7 cut(s) 226, 288, 347, 579, 695, 709, 794
FatI CATG 7 cut(s) 222, 284, 343, 575, 691, 705, 790
FokI GGATG 5 cut(s) 69, 420, 455, 587, 789
FriOI GRGCYC 1 cut(s) 259
FspAI RTGCGCAY 2 cut(s) 340, 580
FspBI CTAG 1 cut(s) 251
FspI TGCGCA 2 cut(s) 340, 580
GlaI GCGC 2 cut(s) 340, 580
GsaI CCCAGC 1 cut(s) 134
HaeIII GGCC 2 cut(s) 29, 640
HapII CCGG 1 cut(s) 584
HhaI GCGC 2 cut(s) 341, 581
Hin1II CATG 7 cut(s) 226, 288, 347, 579, 695, 709, 794
Hin6I GCGC 2 cut(s) 339, 579
HinP1I GCGC 2 cut(s) 339, 579
HinfI GANTC 5 cut(s) 71, 157, 378, 427, 454
HpaII CCGG 1 cut(s) 584
HphI GGTGA 2 cut(s) 335, 731
Hpy166II GTNNAC 2 cut(s) 326, 668
Hpy188I TCNGA 3 cut(s) 76, 605, 786
Hpy188III TCNNGA 2 cut(s) 152, 406
Hpy8I GTNNAC 2 cut(s) 326, 668
Hpy99I CGWCG 1 cut(s) 806
HpyAV CCTTC 3 cut(s) 156, 368, 459
HpyCH4III ACNGT 2 cut(s) 179, 636
HpyCH4IV ACGT 1 cut(s) 527
HpyCH4V TGCA 3 cut(s) 222, 269, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 58
HpyF3I CTNAG 2 cut(s) 362, 743
HpySE526I ACGT 1 cut(s) 527
Hsp92II CATG 7 cut(s) 226, 288, 347, 579, 695, 709, 794
HspAI GCGC 2 cut(s) 339, 579
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 3 cut(s) 491, 739, 798
LmnI GCTCC 2 cut(s) 132, 816
LpnPI CCDG 5 cut(s) 47, 144, 367, 597, 756
LweI GCATC 1 cut(s) 609
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 527
MalI GATC 3 cut(s) 493, 741, 800
MboI GATC 3 cut(s) 491, 739, 798
MboII GAAGA 7 cut(s) 53, 80, 89, 254, 449, 452, 808
MflI RGATCY 2 cut(s) 491, 739
MhlI GDGCHC 2 cut(s) 259, 278
MluCI AATT 1 cut(s) 232
MlyI GAGTC 2 cut(s) 80, 421
Mph1103I ATGCAT 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 728
MseI TTAA 2 cut(s) 237, 534
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 584
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 35, 58
NdeII GATC 3 cut(s) 491, 739, 798
NlaIII CATG 7 cut(s) 226, 288, 347, 579, 695, 709, 794
NsbI TGCGCA 2 cut(s) 340, 580
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 3 cut(s) 226, 579, 794
NspV TTCGAA 1 cut(s) 452
PaeI GCATGC 1 cut(s) 579
PceI AGGCCT 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 3 cut(s) 157, 378, 454
Pfl23II CGTACG 2 cut(s) 174, 507
PflMI CCANNNNNTGG 2 cut(s) 570, 773
PleI GAGTC 2 cut(s) 79, 421
PpsI GAGTC 2 cut(s) 79, 421
PsiI TTATAA 1 cut(s) 832
PspFI CCCAGC 1 cut(s) 130
PspLI CGTACG 2 cut(s) 174, 507
PsuI RGATCY 2 cut(s) 491, 739
RsaI GTAC 4 cut(s) 17, 176, 509, 629
RsaNI GTAC 4 cut(s) 16, 175, 508, 628
SacII CCGCGG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 237, 534
Sau3AI GATC 3 cut(s) 491, 739, 798
SchI GAGTC 2 cut(s) 80, 421
SduI GDGCHC 2 cut(s) 259, 278
SetI ASST 9 cut(s) 66, 129, 252, 284, 325, 443, 451, 530, 821
SfaNI GCATC 1 cut(s) 609
Sfr303I CCGCGG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 452
SgrBI CCGCGG 1 cut(s) 112
SmlI CTYRAG 2 cut(s) 150, 258
SmoI CTYRAG 2 cut(s) 150, 258
SphI GCATGC 1 cut(s) 579
Sse9I AATT 1 cut(s) 232
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 2 cut(s) 109, 111
SspMI CTAG 1 cut(s) 251
StuI AGGCCT 1 cut(s) 29
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 179, 636
TaiI ACGT 1 cut(s) 530
TaqI TCGA 4 cut(s) 399, 452, 623, 643
TasI AATT 1 cut(s) 232
TfiI GAWTC 3 cut(s) 157, 378, 454
Tru1I TTAA 2 cut(s) 237, 534
Tru9I TTAA 2 cut(s) 237, 534
TspDTI ATGAA 6 cut(s) 155, 387, 504, 672, 694, 811
TspGWI ACGGA 1 cut(s) 645
Van91I CCANNNNNTGG 2 cut(s) 570, 773
XapI RAATTY 1 cut(s) 232
XceI RCATGY 3 cut(s) 226, 579, 794
XmaJI CCTAGG 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 728
XspI CTAG 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.