FvH4_6g22690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000125
Physical Location & Seq
Reverse (-)
16319148 .. 16321438
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22690.t1

Sequence Viewer

Length: 537 bp
ATGCTGAGGACGAAACGAATGAGCCAGTGCAGCAGCAATGCAAGGTTGATGGAGCTACCGCATGTTATCCTCATCGACATCCTTTTGAGACTGCCTGTAAAATCACTTTTCTGCGAGACAAAAGCAGATATGCCATTGTCTCATAGATTGCATCCTCCCGATATGCTCATGATGTTGGTTTTGTTTCCTGCAACTTGTTTTTCTTTAAGGGCATACAGTATATCGAGGTCCATGCTTCCTTTTCAACCCTCTCAGGGGAGAAGCTCTCATGCTCCCAATGAGTACCGTCCAAGTTCCACTTTAAAGAAGCTTGAAGACCTTCCTCGGCATCTTGGCCAGAGTAATACTTGCATTGGAGAGTGGGAGCATGGCATATTTTTCATAGAATCGTATGTTGCTGCTGTTAACGCATTCTTTGTGGATATAAGACGTGATTCTGTGAAACGCATATCACTTGGAAGTCCATACAAGGATCTTCAGCTATCCGCGGAGTTTGATTTCCTTAAAAGAGTTTGGCAATTTGATTACAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.58

Weight (kDa)

9.3

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 488
AciI CCGC 3 cut(s) 59, 486, 488
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 254, 255
AgsI TTSAA 2 cut(s) 245, 314
AjiI CACGTC 1 cut(s) 431
AluBI AGCT 4 cut(s) 55, 264, 310, 481
AluI AGCT 4 cut(s) 55, 264, 310, 481
Alw26I GTCTC 3 cut(s) 82, 110, 144
AlwI GGATC 1 cut(s) 480
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 3 cut(s) 30, 33, 398
Asp700I GAANNNNTTC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 228
AvaII GGWCC 1 cut(s) 228
BalI TGGCCA 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 3 cut(s) 42, 45, 385
BccI CCATC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BcoDI GTCTC 3 cut(s) 82, 110, 144
BisI GCNGC 3 cut(s) 31, 34, 399
BlsI GCNGC 3 cut(s) 32, 35, 400
Bme18I GGWCC 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 228
BmsI GCATC 2 cut(s) 160, 337
BpiI GAAGAC 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 250, 282
Bpu10I CCTNAGC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 323, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 255
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 323, 486
BseGI GGATG 2 cut(s) 78, 151
BseLI CCNNNNNNNGG 2 cut(s) 254, 255
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 3 cut(s) 42, 45, 385
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 488
BshFI GGCC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 254, 255
BsmAI GTCTC 3 cut(s) 82, 110, 144
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 3 cut(s) 59, 486, 488
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 488
BspHI TCATGA 1 cut(s) 168
BspPI GGATC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 323, 486
BssMI GATC 1 cut(s) 472
Bst4CI ACNGT 2 cut(s) 218, 287
BstDEI CTNAG 2 cut(s) 5, 252
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 78, 151
BstFNI CGCG 1 cut(s) 488
BstKTI GATC 1 cut(s) 475
BstMAI GTCTC 3 cut(s) 82, 110, 144
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 2 cut(s) 30, 407
BstNSI RCATGY 1 cut(s) 65
BstUI CGCG 1 cut(s) 488
BstV1I GCAGC 3 cut(s) 42, 45, 385
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 486
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 2 cut(s) 78, 151
BtsIMutI CAGTG 1 cut(s) 32
CciI TCATGA 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 228
Cfr42I CCGCGG 1 cut(s) 489
Csp6I GTAC 1 cut(s) 283
CviAII CATG 5 cut(s) 62, 169, 232, 269, 368
CviJI RGCY 6 cut(s) 24, 55, 264, 310, 336, 481
CviKI_1 RGCY 6 cut(s) 24, 55, 264, 310, 336, 481
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 5, 252
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
DraI TTTAAA 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 461
FaeI CATG 5 cut(s) 65, 172, 235, 272, 371
FalI AAGNNNNNCTT 2 cut(s) 283, 315
FatI CATG 5 cut(s) 61, 168, 231, 268, 367
Fnu4HI GCNGC 3 cut(s) 31, 34, 399
FokI GGATG 2 cut(s) 65, 138
Fsp4HI GCNGC 3 cut(s) 31, 34, 399
GluI GCNGC 3 cut(s) 31, 34, 399
HaeIII GGCC 1 cut(s) 336
Hin1II CATG 5 cut(s) 65, 172, 235, 272, 371
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 2 cut(s) 386, 434
HpaI GTTAAC 1 cut(s) 406
Hpy166II GTNNAC 1 cut(s) 406
Hpy188III TCNNGA 2 cut(s) 158, 169
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 218, 287
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 5 cut(s) 30, 41, 151, 191, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 407
HpyF3I CTNAG 2 cut(s) 5, 252
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 5 cut(s) 65, 172, 235, 272, 371
KspAI GTTAAC 1 cut(s) 406
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 1 cut(s) 472
LmnI GCTCC 3 cut(s) 52, 277, 364
LpnPI CCDG 5 cut(s) 38, 108, 201, 239, 350
Lsp1109I GCAGC 3 cut(s) 42, 45, 385
LweI GCATC 2 cut(s) 160, 337
MaeII ACGT 1 cut(s) 430
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 2 cut(s) 326, 467
MflI RGATCY 1 cut(s) 472
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 1 cut(s) 518
MluNI TGGCCA 1 cut(s) 336
MnlI CCTC 5 cut(s) 80, 165, 219, 259, 333
Mox20I TGGCCA 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 318
MscI TGGCCA 1 cut(s) 336
MseI TTAA 4 cut(s) 206, 302, 405, 504
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 410
MvnI CGCG 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 30, 407
NdeII GATC 1 cut(s) 472
NlaIII CATG 5 cut(s) 65, 172, 235, 272, 371
NmeAIII GCCGAG 1 cut(s) 304
NspI RCATGY 1 cut(s) 65
PagI TCATGA 1 cut(s) 168
PctI GAATGC 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 2 cut(s) 386, 434
PkrI GCNGC 3 cut(s) 32, 35, 400
PspPI GGNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SacII CCGCGG 1 cut(s) 489
SaqAI TTAA 4 cut(s) 206, 302, 405, 504
SatI GCNGC 3 cut(s) 31, 34, 399
Sau3AI GATC 1 cut(s) 472
Sau96I GGNCC 1 cut(s) 228
SetI ASST 8 cut(s) 47, 57, 230, 266, 312, 321, 433, 483
SfaNI GCATC 2 cut(s) 160, 337
Sfr303I CCGCGG 1 cut(s) 489
SgrBI CCGCGG 1 cut(s) 489
SinI GGWCC 1 cut(s) 228
Sse9I AATT 1 cut(s) 518
SsiI CCGC 3 cut(s) 59, 486, 488
TaaI ACNGT 2 cut(s) 218, 287
TaiI ACGT 1 cut(s) 433
TaqI TCGA 2 cut(s) 75, 224
TasI AATT 1 cut(s) 518
TfiI GAWTC 2 cut(s) 386, 434
Tru1I TTAA 4 cut(s) 206, 302, 405, 504
Tru9I TTAA 4 cut(s) 206, 302, 405, 504
TscAI CASTG 1 cut(s) 32
TseI GCWGC 3 cut(s) 30, 33, 398
TspDTI ATGAA 1 cut(s) 370
TspRI CASTG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 228
XceI RCATGY 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.