Rmu_sc0003901.1_g000004

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003901.1
OG0000125
Physical Location & Seq
Forward (+)
28280 .. 29352
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003901.1_g000004.1.cds

Sequence Viewer

Length: 630 bp
ctgcagcaaccacaacaccgcaaagccaactgtgatcaaagacctacaaaaggctatcttggtccaaatctttttgaacctgccctcaaaatcactcttttgcctccgtttgtatctaaggccttctcaaggtccgtcgacgaccactctttcattgcacttcacaactggttacttgtggatgccaaaggtgctgtagatgtcccccaacttctggctgctaaaaatgttctatcatctagttcctcaaattttgtggctcttcgatcggtcaagtacgacggcagctccttaacaaaaggcaactatgcagtcaagagtggtataatcacttttgacttcacgaaagaagggttctatttgaatcctactccacccggatcgttcagctcgaacaagaacttgcacttgcttactataagaggagctttggccattgtgacgacttcttcgtcagcagatatgactcagattgagatatgggtgatgaaagattatgatagaaaagtgtggatgcaagagtacacagtaaatgttggagtgttttctgattttggactgaagtttgctacttgtggtgaatgggaacatggcatatatttcaatcatagcagcagagattctaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

209

Amino Acids

23.26

Weight (kDa)

9.01

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 451
Acc36I ACCTGC 1 cut(s) 88
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 1 cut(s) 138
AciI CCGC 1 cut(s) 19
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 2 cut(s) 278, 524
AfiI CCNNNNNNNGG 3 cut(s) 50, 129, 214
AgsI TTSAA 3 cut(s) 77, 364, 604
AluBI AGCT 3 cut(s) 288, 390, 428
AluI AGCT 3 cut(s) 288, 390, 428
AlwI GGATC 1 cut(s) 388
AoxI GGCC 2 cut(s) 120, 432
ApeKI GCWGC 4 cut(s) 4, 218, 285, 612
ApoI RAATTY 1 cut(s) 250
ArsI GACNNNNNNTTYG 2 cut(s) 433, 465
AspS9I GGNCC 2 cut(s) 62, 132
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 496, 590
AvaII GGWCC 2 cut(s) 62, 132
BalI TGGCCA 1 cut(s) 434
BbvI GCAGC 4 cut(s) 16, 205, 297, 624
BceAI ACGGC 1 cut(s) 298
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 2 cut(s) 2, 195
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 4 cut(s) 5, 219, 286, 613
BlsI GCNGC 4 cut(s) 6, 220, 287, 614
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 2 cut(s) 62, 132
BmgT120I GGNCC 2 cut(s) 62, 132
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 172, 504
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 129, 214
Bse1I ACTGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 153
BseGI GGATG 2 cut(s) 187, 519
BseLI CCNNNNNNNGG 3 cut(s) 50, 129, 214
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 438
BseXI GCAGC 4 cut(s) 16, 205, 297, 624
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 2 cut(s) 122, 434
BsiEI CGRYCG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 50, 129, 214
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 2 cut(s) 122, 434
Bsp143I GATC 3 cut(s) 34, 266, 380
BspACI CCGC 1 cut(s) 19
BspANI GGCC 2 cut(s) 122, 434
BspCNI CTCAG 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 388
BspQI GCTCTTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 173
BssMI GATC 3 cut(s) 34, 266, 380
Bst4CI ACNGT 2 cut(s) 32, 529
Bst6I CTCTTC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 117, 468
BstENI CCTNNNNNAGG 2 cut(s) 48, 127
BstF5I GGATG 2 cut(s) 187, 519
BstKTI GATC 3 cut(s) 37, 269, 383
BstMBI GATC 3 cut(s) 34, 266, 380
BstMCI CGRYCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 2 cut(s) 2, 195
BstV1I GCAGC 4 cut(s) 16, 205, 297, 624
BsuRI GGCC 2 cut(s) 122, 434
BtsCI GGATG 2 cut(s) 187, 519
BveI ACCTGC 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 62, 132
Csp6I GTAC 2 cut(s) 277, 523
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 1 cut(s) 590
CviJI RGCY 9 cut(s) 26, 54, 122, 218, 260, 288, 390, 428, 434
CviKI_1 RGCY 9 cut(s) 26, 54, 122, 218, 260, 288, 390, 428, 434
CviQI GTAC 2 cut(s) 277, 523
DdeI CTNAG 2 cut(s) 117, 468
DpnI GATC 3 cut(s) 36, 268, 382
DpnII GATC 3 cut(s) 34, 266, 380
DrdI GACNNNNNNGTC 1 cut(s) 451
DseDI GACNNNNNNGTC 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 62, 132
Eco57I CTGAAG 1 cut(s) 581
EcoNI CCTNNNNNAGG 2 cut(s) 48, 127
FaeI CATG 1 cut(s) 593
FalI AAGNNNNNCTT 4 cut(s) 42, 74, 412, 444
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 589
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 5, 219, 286, 613
FokI GGATG 2 cut(s) 194, 526
Fsp4HI GCNGC 4 cut(s) 5, 219, 286, 613
FspBI CTAG 1 cut(s) 240
GluI GCNGC 4 cut(s) 5, 219, 286, 613
HaeIII GGCC 2 cut(s) 122, 434
HapII CCGG 1 cut(s) 378
Hin1II CATG 1 cut(s) 593
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 3 cut(s) 364, 466, 620
HpaII CCGG 1 cut(s) 378
HphI GGTGA 2 cut(s) 496, 590
Hpy166II GTNNAC 2 cut(s) 139, 525
Hpy188I TCNGA 2 cut(s) 471, 550
Hpy188III TCNNGA 2 cut(s) 316, 343
Hpy8I GTNNAC 2 cut(s) 139, 525
Hpy99I CGWCG 3 cut(s) 140, 143, 284
HpyAV CCTTC 2 cut(s) 133, 344
HpyCH4III ACNGT 2 cut(s) 32, 529
HpyCH4V TGCA 5 cut(s) 4, 158, 311, 406, 517
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 117, 468
Hsp92II CATG 1 cut(s) 593
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 3 cut(s) 34, 266, 380
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 2 cut(s) 293, 425
LpnPI CCDG 4 cut(s) 93, 154, 200, 391
Lsp1109I GCAGC 4 cut(s) 16, 205, 297, 624
LweI GCATC 2 cut(s) 172, 504
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 171, 439
MalI GATC 3 cut(s) 36, 268, 382
MboI GATC 3 cut(s) 34, 266, 380
MboII GAAGA 2 cut(s) 254, 441
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 4 cut(s) 95, 114, 256, 416
Mox20I TGGCCA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 434
MseI TTAA 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 434
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 378
NdeII GATC 3 cut(s) 34, 266, 380
NlaIII CATG 1 cut(s) 593
NmuCI GTSAC 1 cut(s) 439
PceI AGGCCT 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 2 cut(s) 389, 449
PfeI GAWTC 2 cut(s) 364, 620
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 4 cut(s) 6, 220, 287, 614
Ple19I CGATCG 1 cut(s) 269
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PspPI GGNCC 2 cut(s) 62, 132
PstI CTGCAG 1 cut(s) 6
PvuI CGATCG 1 cut(s) 269
RsaI GTAC 2 cut(s) 278, 524
RsaNI GTAC 2 cut(s) 277, 523
SalI GTCGAC 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 4 cut(s) 5, 219, 286, 613
Sau3AI GATC 3 cut(s) 34, 266, 380
Sau96I GGNCC 2 cut(s) 62, 132
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 1 cut(s) 378
SetI ASST 7 cut(s) 46, 82, 134, 193, 290, 392, 430
SfaNI GCATC 2 cut(s) 172, 504
SfcI CTRYAG 2 cut(s) 2, 195
SgrDI CGTCGACG 1 cut(s) 137
SinI GGWCC 2 cut(s) 62, 132
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 1 cut(s) 250
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 1 cut(s) 19
SspMI CTAG 1 cut(s) 240
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 2 cut(s) 32, 529
TaqI TCGA 3 cut(s) 138, 265, 392
TaqII GACCGA 1 cut(s) 259
TasI AATT 1 cut(s) 250
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 2 cut(s) 364, 620
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 4 cut(s) 4, 218, 285, 612
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 2 cut(s) 142, 503
TspGWI ACGGA 2 cut(s) 96, 124
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 2 cut(s) 62, 132
XagI CCTNNNNNAGG 2 cut(s) 48, 127
XapI RAATTY 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.