Rh1DG375000

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000125
Physical Location & Seq
Reverse (-)
59815478 .. 59816133
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG375000.1

Sequence Viewer

Length: 543 bp
ATGCATTGGTTGAGTGATAGTGAAGGATTCTGGCAAATTATTTCTTCCGACTTCACGAAAGAGGAGTTCTATTTGACTCCCCATCCCACCTCAATACCTTCGGATCTTCTTCCTTACATCCACTTACTTACTTGGAGAGGATCTATTGCCATTGCTTACGCTTCATTATTGGATACGTCTATTAAGGTTTGGGTGTTGAAAAAATATGATACCAAAGAGTGGGCATGCGCACCGGATTACTCCATAAGCATCCGAAATGATGTAGCAACATCGAAGTACGGACTGTGGCCTCGATTAGTTGCTGATGAATATAGTTCACTAACTTATTGTGAATGGGAACATGGCATATTTTTCATGGAAAAACTTGGTGAGAACATATTCTTTTTGGATCTAAGAGGAGTTTCCAAGAAATACCCAACTGGTATGTCCTCGGAAGCATGTGAAGATCGTCGGCTATGCTTGGAGCTTCATTTCCTTAAAACATTATGGCCAATTGGAAGTAGAAGAGAAAGCAGAAGCAGAGAAGTATGGGATGCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

180

Amino Acids

21.05

Weight (kDa)

5.55

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 219
AclWI GGATC 3 cut(s) 111, 148, 396
AcoI YGGCCR 1 cut(s) 488
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 1 cut(s) 199
AluBI AGCT 1 cut(s) 466
AluI AGCT 1 cut(s) 466
AlwI GGATC 3 cut(s) 111, 148, 396
AoxI GGCC 2 cut(s) 287, 488
Asp700I GAANNNNTTC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 380
BalI TGGCCA 1 cut(s) 490
BccI CCATC 1 cut(s) 90
BciVI GTATCC 1 cut(s) 166
BfaI CTAG 1 cut(s) 541
BfuI GTATCC 1 cut(s) 166
BmsI GCATC 2 cut(s) 258, 523
BsaJI CCNNGG 1 cut(s) 429
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 4 cut(s) 82, 117, 249, 538
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 2 cut(s) 77, 411
BshFI GGCC 2 cut(s) 289, 490
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 219
BsnI GGCC 2 cut(s) 289, 490
Bsp143I GATC 4 cut(s) 103, 140, 388, 445
BspANI GGCC 2 cut(s) 289, 490
BspPI GGATC 3 cut(s) 111, 148, 396
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 4 cut(s) 103, 140, 388, 445
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 499
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 392
BstF5I GGATG 4 cut(s) 82, 117, 249, 538
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 4 cut(s) 106, 143, 391, 448
BstMBI GATC 4 cut(s) 103, 140, 388, 445
BstNSI RCATGY 2 cut(s) 228, 441
BstX2I RGATCY 3 cut(s) 103, 140, 388
BstYI RGATCY 3 cut(s) 103, 140, 388
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 289, 490
BtsCI GGATG 4 cut(s) 82, 117, 249, 538
Cac8I GCNNGC 1 cut(s) 226
CfoI GCGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 277
CviAII CATG 4 cut(s) 225, 341, 355, 438
CviJI RGCY 4 cut(s) 289, 454, 466, 490
CviKI_1 RGCY 4 cut(s) 289, 454, 466, 490
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 392
DpnI GATC 4 cut(s) 105, 142, 390, 447
DpnII GATC 4 cut(s) 103, 140, 388, 445
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 499
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 228, 344, 358, 441
FatI CATG 4 cut(s) 224, 340, 354, 437
FokI GGATG 3 cut(s) 69, 104, 236
FspAI RTGCGCAY 1 cut(s) 229
FspBI CTAG 1 cut(s) 541
FspI TGCGCA 1 cut(s) 229
GlaI GCGC 1 cut(s) 229
HaeIII GGCC 2 cut(s) 289, 490
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 230
Hin1II CATG 4 cut(s) 228, 344, 358, 441
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HinfI GANTC 2 cut(s) 27, 76
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 4 cut(s) 49, 103, 254, 433
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 317
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 2 cut(s) 17, 108
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 4, 536
HpyF3I CTNAG 1 cut(s) 392
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 4 cut(s) 228, 344, 358, 441
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 4 cut(s) 103, 140, 388, 445
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 3 cut(s) 16, 246, 405
LweI GCATC 2 cut(s) 258, 523
MaeI CTAG 1 cut(s) 541
MaeII ACGT 1 cut(s) 176
MalI GATC 4 cut(s) 105, 142, 390, 447
MboI GATC 4 cut(s) 103, 140, 388, 445
MboII GAAGA 5 cut(s) 36, 98, 101, 455, 516
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 3 cut(s) 103, 140, 388
MlsI TGGCCA 1 cut(s) 490
MluCI AATT 2 cut(s) 36, 492
MluNI TGGCCA 1 cut(s) 490
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 55, 100, 131, 300, 389, 439
Mox20I TGGCCA 1 cut(s) 490
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 377
MscI TGGCCA 1 cut(s) 490
MseI TTAA 2 cut(s) 183, 477
Msp20I TGGCCA 1 cut(s) 490
MspI CCGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 492
NdeII GATC 4 cut(s) 103, 140, 388, 445
NlaIII CATG 4 cut(s) 228, 344, 358, 441
NsbI TGCGCA 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 228, 441
PaeI GCATGC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 219
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PsuI RGATCY 3 cut(s) 103, 140, 388
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SaqAI TTAA 2 cut(s) 183, 477
Sau3AI GATC 4 cut(s) 103, 140, 388, 445
SchI GAGTC 1 cut(s) 70
SetI ASST 6 cut(s) 92, 100, 179, 189, 468, 542
SfaNI GCATC 2 cut(s) 258, 523
SphI GCATGC 1 cut(s) 228
Sse9I AATT 2 cut(s) 36, 492
SspMI CTAG 1 cut(s) 541
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 272, 292
TasI AATT 2 cut(s) 36, 492
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 2 cut(s) 183, 477
Tru9I TTAA 2 cut(s) 183, 477
TspDTI ATGAA 4 cut(s) 153, 321, 343, 458
TspGWI ACGGA 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 219
XceI RCATGY 2 cut(s) 228, 441
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 1 cut(s) 541
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.