Rw1G033430

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000125
Physical Location & Seq
Reverse (-)
61512804 .. 61513577
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033430.1

Sequence Viewer

Length: 774 bp
ATGAATATCTCTTCAACCAATATTCCTTTTTTCAAAGAACATCCATGCTTCTTGTCCAATCCTCTCCGCGGAGAAGTTCTAAAGCTCCCAGCAAATAACTTTCCTTCTCAAGAGAATCGTTTTCATCTCTCGTACGGTATGAGGTTTGATACTATAACCAACACCCACAAGATTGTTTGCATGTCCTCAAATTTTGAAGAAGACTACCTAGGGGCTCAAGTTCTTGCATTGGGCACAAGCTCATGGAAAGAGATACCCTCTTTGCCTCCTTGTTATTTAGGTGAACAAAAGATATGTGCACATGGAGATATGCATTGGTTGAGTGATAGTGAAGGATTCTGGCAGATTATTTCTTTCGACTTCACGAAAGAGGAGTTCTATTTGACTCCCCATCCCACCTCAATACCTTCGGATCTTCTTCCTTACATCCACTTACTTACTTGGAGAGGATCTATTGCCATTGTGTACGCTTCATTATTGGATACGTCTATTAAGATTTGGGTGTTGAAAAAATATGATACCAAAGAGTGGACATGCGCACCGGATTACTCCATAAGCATCCGAAATGATGTAGCAACATCGAAGTACGGACTGTGGCCTCGATTAGTTGCTGATGAATATAGTTCACTAACTTATTGTGAATGGGAACATGGCATATTTTTCATGGAAAAACTTGGTGAGAACATATTCTTTTTGGATCTAAGAGGAGATTCCAAGAAATACCCAACTGGTGGATGTCCTCGGAAGCATGTGAAGATCGTCGGCTATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

257

Amino Acids

29.56

Weight (kDa)

5.98

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 16 - 182 1.2e-13 F-box associated beta propeller domain
FBA_3 PF08268 18 - 180 1.1e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 538
AccB7I CCANNNNNTGG 2 cut(s) 528, 731
AccII CGCG 1 cut(s) 69
AciI CCGC 2 cut(s) 67, 69
AclWI GGATC 3 cut(s) 420, 457, 705
AcsI RAATTY 1 cut(s) 190
AfaI GTAC 3 cut(s) 134, 467, 587
AfiI CCNNNNNNNGG 3 cut(s) 68, 528, 731
AgsI TTSAA 4 cut(s) 15, 34, 197, 508
AluBI AGCT 2 cut(s) 85, 240
AluI AGCT 2 cut(s) 85, 240
Alw21I GWGCWC 1 cut(s) 301
Alw44I GTGCAC 1 cut(s) 297
AlwI GGATC 3 cut(s) 420, 457, 705
AoxI GGCC 1 cut(s) 596
ApaLI GTGCAC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 686
AspA2I CCTAGG 1 cut(s) 208
AspLEI GCGC 1 cut(s) 539
AsuHPI GGTGA 2 cut(s) 293, 689
AvrII CCTAGG 1 cut(s) 208
BaeGI GKGCMC 2 cut(s) 236, 301
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 301
BccI CCATC 1 cut(s) 399
BciVI GTATCC 1 cut(s) 475
BfaI CTAG 1 cut(s) 209
BfuI GTATCC 1 cut(s) 475
BlnI CCTAGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpuEI CTTGAG 2 cut(s) 93, 201
BsaJI CCNNGG 3 cut(s) 67, 208, 740
BsaWI WCCGGW 1 cut(s) 541
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 528, 731
Bse1I ACTGG 1 cut(s) 733
BseDI CCNNGG 3 cut(s) 67, 208, 740
BseGI GGATG 5 cut(s) 40, 391, 426, 558, 740
BseLI CCNNNNNNNGG 3 cut(s) 68, 528, 731
BseNI ACTGG 1 cut(s) 733
BseRI GAGGAG 2 cut(s) 386, 720
BseSI GKGCMC 2 cut(s) 236, 301
BseYI CCCAGC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 542
BsiWI CGTACG 1 cut(s) 132
BslI CCNNNNNNNGG 3 cut(s) 68, 528, 731
BsnI GGCC 1 cut(s) 598
Bsp1286I GDGCHC 3 cut(s) 217, 236, 301
Bsp143I GATC 4 cut(s) 412, 449, 697, 756
BspACI CCGC 2 cut(s) 67, 69
BspANI GGCC 1 cut(s) 598
BspFNI CGCG 1 cut(s) 69
BspPI GGATC 3 cut(s) 420, 457, 705
BsrI ACTGG 1 cut(s) 733
BssECI CCNNGG 3 cut(s) 67, 208, 740
BssMI GATC 4 cut(s) 412, 449, 697, 756
BssT1I CCWWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 137, 594
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 701
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 5 cut(s) 40, 391, 426, 558, 740
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 4 cut(s) 415, 452, 700, 759
BstMBI GATC 4 cut(s) 412, 449, 697, 756
BstNSI RCATGY 3 cut(s) 184, 537, 752
BstSLI GKGCMC 2 cut(s) 236, 301
BstUI CGCG 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 3 cut(s) 412, 449, 697
BstYI RGATCY 3 cut(s) 412, 449, 697
BsuI GTATCC 1 cut(s) 475
BsuRI GGCC 1 cut(s) 598
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 5 cut(s) 40, 391, 426, 558, 740
CfoI GCGC 1 cut(s) 539
Cfr42I CCGCGG 1 cut(s) 70
Csp6I GTAC 3 cut(s) 133, 466, 586
CviAII CATG 8 cut(s) 45, 181, 243, 302, 534, 650, 664, 749
CviJI RGCY 5 cut(s) 85, 215, 240, 598, 765
CviKI_1 RGCY 5 cut(s) 85, 215, 240, 598, 765
CviQI GTAC 3 cut(s) 133, 466, 586
DdeI CTNAG 1 cut(s) 701
DpnI GATC 4 cut(s) 414, 451, 699, 758
DpnII GATC 4 cut(s) 412, 449, 697, 756
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 208
EcoT22I ATGCAT 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 8 cut(s) 48, 184, 246, 305, 537, 653, 667, 752
FatI CATG 8 cut(s) 44, 180, 242, 301, 533, 649, 663, 748
FokI GGATG 5 cut(s) 27, 378, 413, 545, 747
FriOI GRGCYC 1 cut(s) 217
FspAI RTGCGCAY 1 cut(s) 538
FspBI CTAG 1 cut(s) 209
FspI TGCGCA 1 cut(s) 538
GlaI GCGC 1 cut(s) 538
GsaI CCCAGC 1 cut(s) 92
HaeIII GGCC 1 cut(s) 598
HapII CCGG 1 cut(s) 542
HhaI GCGC 1 cut(s) 539
Hin1II CATG 8 cut(s) 48, 184, 246, 305, 537, 653, 667, 752
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HinfI GANTC 4 cut(s) 115, 336, 385, 710
HpaII CCGG 1 cut(s) 542
HphI GGTGA 2 cut(s) 293, 689
Hpy166II GTNNAC 5 cut(s) 284, 299, 466, 531, 626
Hpy188I TCNGA 3 cut(s) 412, 563, 744
Hpy188III TCNNGA 2 cut(s) 110, 364
Hpy8I GTNNAC 5 cut(s) 284, 299, 466, 531, 626
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 3 cut(s) 114, 326, 417
HpyCH4III ACNGT 2 cut(s) 137, 594
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 4 cut(s) 180, 227, 299, 313
HpyF3I CTNAG 1 cut(s) 701
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 8 cut(s) 48, 184, 246, 305, 537, 653, 667, 752
HspAI GCGC 1 cut(s) 537
KspI CCGCGG 1 cut(s) 70
Kzo9I GATC 4 cut(s) 412, 449, 697, 756
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 4 cut(s) 102, 325, 555, 714
LweI GCATC 1 cut(s) 567
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 485
MalI GATC 4 cut(s) 414, 451, 699, 758
MboI GATC 4 cut(s) 412, 449, 697, 756
MboII GAAGA 6 cut(s) 3, 209, 212, 407, 410, 766
MflI RGATCY 3 cut(s) 412, 449, 697
MhlI GDGCHC 3 cut(s) 217, 236, 301
MluCI AATT 1 cut(s) 190
MlyI GAGTC 1 cut(s) 379
Mph1103I ATGCAT 1 cut(s) 315
MroXI GAANNNNTTC 1 cut(s) 686
MseI TTAA 1 cut(s) 492
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 1 cut(s) 542
MvnI CGCG 1 cut(s) 69
NdeII GATC 4 cut(s) 412, 449, 697, 756
NlaIII CATG 8 cut(s) 48, 184, 246, 305, 537, 653, 667, 752
NsbI TGCGCA 1 cut(s) 538
NsiI ATGCAT 1 cut(s) 315
NspI RCATGY 3 cut(s) 184, 537, 752
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 3 cut(s) 115, 336, 710
Pfl23II CGTACG 1 cut(s) 132
PflMI CCANNNNNTGG 2 cut(s) 528, 731
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 88
PspLI CGTACG 1 cut(s) 132
PsuI RGATCY 3 cut(s) 412, 449, 697
RsaI GTAC 3 cut(s) 134, 467, 587
RsaNI GTAC 3 cut(s) 133, 466, 586
SacII CCGCGG 1 cut(s) 70
SaqAI TTAA 1 cut(s) 492
Sau3AI GATC 4 cut(s) 412, 449, 697, 756
SchI GAGTC 1 cut(s) 379
SduI GDGCHC 3 cut(s) 217, 236, 301
SetI ASST 8 cut(s) 87, 146, 210, 242, 283, 401, 409, 488
SfaNI GCATC 1 cut(s) 567
Sfr303I CCGCGG 1 cut(s) 70
SgrBI CCGCGG 1 cut(s) 70
SmlI CTYRAG 2 cut(s) 108, 216
SmoI CTYRAG 2 cut(s) 108, 216
Sse9I AATT 1 cut(s) 190
SsiI CCGC 2 cut(s) 67, 69
SspI AATATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 137, 594
TaiI ACGT 1 cut(s) 488
TaqI TCGA 3 cut(s) 357, 581, 601
TasI AATT 1 cut(s) 190
TfiI GAWTC 3 cut(s) 115, 336, 710
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TspDTI ATGAA 5 cut(s) 17, 113, 462, 630, 652
TspGWI ACGGA 1 cut(s) 603
Van91I CCANNNNNTGG 2 cut(s) 528, 731
VneI GTGCAC 1 cut(s) 297
XapI RAATTY 1 cut(s) 190
XceI RCATGY 3 cut(s) 184, 537, 752
XmaJI CCTAGG 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.