Rh2DG612500

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
84440168 .. 84440674
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG612500.1

Sequence Viewer

Length: 507 bp
ATGGAGATGCCGACGGCCGCAATGAGTACATCAAAGTTGATGGAGCTTCCTCATGATATCCTCCTCAACATCTTTTCGAGACTGCCGGCGGCATCGCTTTTGCAGTTCCAATGCGTCTCTAAGAGCTCACGTGACCTAGTTAACGATCCAGCTCTTACTGCCATGCACATGGCAGCTACCAATGAACACGTCGACGTAGAAGCTAGGGTACTTTCTGATTCTCTTTTCCTGAGCCATTTTGAGTTTGTTTCTTGCGGTTTGCTTGGCTTTAGATGTGATGGTTCTGATGGAAAACTCGGTTTATACAATCCTTTAAGAGGAGAATATCTTGAGCTCCCACTACCTGAAGATGGATACAGAAACTGGTATGGTATGGGATTCGATAGCGTTACTAGCACCCACAAGATTGTCCATTTTTTCACAAAGGTGGGTAATGTTCATGTTTTGGGCACAATTAAGCTCGTGGAGAAGAATACCCTCGGTTCCTCGTTGGTCTCTCATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

18.57

Weight (kDa)

6.03

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 52 8.1e-11 F-box domain
F-box-like PF12937 15 - 52 5.2e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 192
AciI CCGC 3 cut(s) 18, 89, 255
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 366
AcvI CACGTG 1 cut(s) 131
AfaI GTAC 2 cut(s) 28, 210
AfiI CCNNNNNNNGG 2 cut(s) 317, 350
AflIII ACRYGT 1 cut(s) 187
AjiI CACGTC 1 cut(s) 190
AleI CACNNNNGTG 1 cut(s) 425
AluBI AGCT 7 cut(s) 46, 126, 152, 176, 203, 334, 460
AluI AGCT 7 cut(s) 46, 126, 152, 176, 203, 334, 460
Alw21I GWGCWC 2 cut(s) 128, 336
Alw26I GTCTC 3 cut(s) 73, 121, 499
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 363
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 452
BanII GRGCYC 2 cut(s) 128, 336
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BauI CACGAG 1 cut(s) 461
BbrPI CACGTG 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 128, 336
BbvI GCAGC 1 cut(s) 185
BccI CCATC 4 cut(s) 34, 272, 281, 344
BceAI ACGGC 1 cut(s) 30
BciVI GTATCC 1 cut(s) 347
BcoDI GTCTC 3 cut(s) 73, 121, 499
BfaI CTAG 3 cut(s) 137, 204, 393
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 3 cut(s) 18, 90, 174
BlsI GCNGC 3 cut(s) 19, 91, 175
BmgBI CACGTC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 484
BmsI GCATC 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 478
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 350
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 478
BseLI CCNNNNNNNGG 2 cut(s) 317, 350
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 2 cut(s) 53, 333
BseSI GKGCMC 1 cut(s) 452
BseX3I CGGCCG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 2 cut(s) 128, 336
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 317, 350
BsmAI GTCTC 3 cut(s) 73, 121, 499
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 499
Bsp1286I GDGCHC 3 cut(s) 128, 336, 452
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 3 cut(s) 18, 89, 255
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 484
BspPI GGATC 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 85
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 1 cut(s) 145
BssSI CACGAG 1 cut(s) 461
Bst2BI CACGAG 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 120, 230
BstENI CCTNNNNNAGG 1 cut(s) 315
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 3 cut(s) 73, 121, 499
BstMBI GATC 1 cut(s) 145
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 2 cut(s) 158, 393
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 169
BstZI CGGCCG 1 cut(s) 15
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 78
BtrI CACGTC 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 363
CciI TCATGA 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 85
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 27, 209
CviAII CATG 4 cut(s) 53, 163, 169, 440
CviQI GTAC 2 cut(s) 27, 209
DdeI CTNAG 2 cut(s) 120, 230
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 15
EagI CGGCCG 1 cut(s) 15
Ecl136II GAGCTC 2 cut(s) 126, 334
EclXI CGGCCG 1 cut(s) 15
Eco24I GRGCYC 2 cut(s) 128, 336
Eco31I GGTCTC 1 cut(s) 499
Eco32I GATATC 1 cut(s) 58
Eco52I CGGCCG 1 cut(s) 15
Eco53kI GAGCTC 2 cut(s) 126, 334
Eco57I CTGAAG 1 cut(s) 366
Eco72I CACGTG 1 cut(s) 131
EcoICRI GAGCTC 2 cut(s) 126, 334
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 58
EcoT38I GRGCYC 2 cut(s) 128, 336
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 4 cut(s) 56, 166, 172, 443
FaiI YATR 8 cut(s) 54, 164, 170, 304, 369, 374, 441, 501
FatI CATG 4 cut(s) 52, 162, 168, 439
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 18, 90, 174
FriOI GRGCYC 2 cut(s) 128, 336
Fsp4HI GCNGC 3 cut(s) 18, 90, 174
FspBI CTAG 3 cut(s) 137, 204, 393
GluI GCNGC 3 cut(s) 18, 90, 174
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 103
Hin1II CATG 4 cut(s) 56, 166, 172, 443
HincII GTYRAC 2 cut(s) 142, 193
HindII GTYRAC 2 cut(s) 142, 193
HinfI GANTC 2 cut(s) 218, 378
HpaI GTTAAC 1 cut(s) 142
HpaII CCGG 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 142, 193
Hpy188I TCNGA 2 cut(s) 217, 286
Hpy188III TCNNGA 4 cut(s) 53, 78, 229, 329
Hpy8I GTNNAC 2 cut(s) 142, 193
Hpy99I CGWCG 3 cut(s) 16, 194, 197
HpyCH4IV ACGT 3 cut(s) 130, 189, 195
HpyCH4V TGCA 2 cut(s) 103, 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 393
HpyF3I CTNAG 2 cut(s) 120, 230
HpySE526I ACGT 3 cut(s) 130, 189, 195
Hsp92II CATG 4 cut(s) 56, 166, 172, 443
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 2 cut(s) 43, 339
LpnPI CCDG 5 cut(s) 99, 162, 242, 349, 357
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 1 cut(s) 101
MaeI CTAG 3 cut(s) 137, 204, 393
MaeII ACGT 3 cut(s) 130, 189, 195
MaeIII GTNAC 2 cut(s) 131, 388
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 359, 481
MhlI GDGCHC 3 cut(s) 128, 336, 452
MluCI AATT 1 cut(s) 453
MnlI CCTC 6 cut(s) 60, 71, 74, 311, 488, 496
MroNI GCCGGC 1 cut(s) 85
MseI TTAA 3 cut(s) 141, 314, 456
MslI CAYNNNNRTG 2 cut(s) 167, 425
MspI CCGG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 158, 393
NaeI GCCGGC 1 cut(s) 87
NdeII GATC 1 cut(s) 145
NgoMIV GCCGGC 1 cut(s) 85
NlaIII CATG 4 cut(s) 56, 166, 172, 443
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 131
OliI CACNNNNGTG 1 cut(s) 425
PagI TCATGA 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 218, 378
PkrI GCNGC 3 cut(s) 19, 91, 175
PmaCI CACGTG 1 cut(s) 131
PmlI CACGTG 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 131
Psp124BI GAGCTC 2 cut(s) 128, 336
PspCI CACGTG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 363
RsaI GTAC 2 cut(s) 28, 210
RsaNI GTAC 2 cut(s) 27, 209
RseI CAYNNNNRTG 2 cut(s) 167, 425
SacI GAGCTC 2 cut(s) 128, 336
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 3 cut(s) 141, 314, 456
SatI GCNGC 3 cut(s) 18, 90, 174
Sau3AI GATC 1 cut(s) 145
SduI GDGCHC 3 cut(s) 128, 336, 452
SfaNI GCATC 1 cut(s) 101
SgrDI CGTCGACG 1 cut(s) 191
SmiMI CAYNNNNRTG 2 cut(s) 167, 425
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 453
SsiI CCGC 3 cut(s) 18, 89, 255
SspMI CTAG 3 cut(s) 137, 204, 393
SstI GAGCTC 2 cut(s) 128, 336
TaiI ACGT 3 cut(s) 133, 192, 198
TaqI TCGA 3 cut(s) 77, 192, 381
TasI AATT 1 cut(s) 453
TatI WGTACW 1 cut(s) 26
TauI GCSGC 2 cut(s) 20, 92
TfiI GAWTC 2 cut(s) 218, 378
Tru1I TTAA 3 cut(s) 141, 314, 456
Tru9I TTAA 3 cut(s) 141, 314, 456
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 198, 428
XagI CCTNNNNNAGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 3 cut(s) 137, 204, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.