Rh3AG233500

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
24078167 .. 24079737
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG233500.1

Sequence Viewer

Length: 381 bp
ATGCTCCCAAAGAGTACCGTCCAAGTTCCACCTTTTAGAAATATGGTATTCATAGATTGGTACGGCATGGGGTTTGATGATATAACCAACACCTACAAGATTGTTCGTGTTTCTGGAAATGCACATTGCTGTTTGGTGGCCCAAGTTTATGAATTAGGCACCAGCTCATGGAAACAGATAAGCACAGTTCCTCCATGGGTGCACAATGCTGCGTTCTACCAGAGATTTCAAGAAGCGTTCAATCATATCTCCATTGAAAGAAGGTCCCTTATAGAAATATTTAATGAAACATTTCACGGTAACCAGCTATTTCCTGAAATTGAGAAACCAAAAGGGGATGGCGTAGCTGGACCTCTATTGCAACCTTGTAACATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.4

Weight (kDa)

6.4

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 168
AfaI GTAC 2 cut(s) 16, 62
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 3 cut(s) 230, 241, 257
AluBI AGCT 3 cut(s) 165, 307, 347
AluI AGCT 3 cut(s) 165, 307, 347
Alw21I GWGCWC 1 cut(s) 204
Alw44I GTGCAC 1 cut(s) 200
AoxI GGCC 1 cut(s) 138
ApaLI GTGCAC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 3 cut(s) 139, 264, 350
AvaII GGWCC 2 cut(s) 264, 350
BaeGI GKGCMC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme18I GGWCC 2 cut(s) 264, 350
BmgT120I GGNCC 3 cut(s) 139, 264, 350
BmiI GGNNCC 2 cut(s) 160, 266
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 194
BspANI GGCC 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 160, 266
BspT107I GGYRCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 3 cut(s) 19, 187, 299
BstDSI CCRYGG 1 cut(s) 194
BstEII GGTNACC 1 cut(s) 299
BstF5I GGATG 1 cut(s) 343
BstPI GGTNACC 1 cut(s) 299
BstSLI GKGCMC 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 343
Cfr13I GGNCC 3 cut(s) 139, 264, 350
Csp6I GTAC 2 cut(s) 15, 61
CviAII CATG 3 cut(s) 67, 168, 195
CviJI RGCY 4 cut(s) 140, 165, 307, 347
CviKI_1 RGCY 4 cut(s) 140, 165, 307, 347
CviQI GTAC 2 cut(s) 15, 61
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 264, 350
Eco91I GGTNACC 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 264
EcoO65I GGTNACC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 3 cut(s) 70, 171, 198
FaiI YATR 9 cut(s) 44, 53, 68, 83, 150, 169, 196, 246, 272
FaqI GGGAC 1 cut(s) 250
FatI CATG 3 cut(s) 66, 167, 194
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 3 cut(s) 70, 171, 198
Hpy166II GTNNAC 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 114, 230, 314
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 3 cut(s) 19, 187, 299
HpyCH4V TGCA 3 cut(s) 122, 202, 361
Hsp92II CATG 3 cut(s) 70, 171, 198
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 6 cut(s) 99, 175, 233, 317, 327, 333
Lsp1109I GCAGC 1 cut(s) 196
MaeIII GTNAC 2 cut(s) 299, 368
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 2 cut(s) 152, 318
MnlI CCTC 2 cut(s) 201, 363
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 1 cut(s) 282
NcoI CCATGG 1 cut(s) 194
NlaIII CATG 3 cut(s) 70, 171, 198
NlaIV GGNNCC 2 cut(s) 160, 266
PdmI GAANNNNTTC 1 cut(s) 291
PflMI CCANNNNNTGG 1 cut(s) 168
PkrI GCNGC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 264
Psp5II RGGWCCY 1 cut(s) 264
PspEI GGTNACC 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 160, 266
PspPI GGNCC 3 cut(s) 139, 264, 350
PspPPI RGGWCCY 1 cut(s) 264
RsaI GTAC 2 cut(s) 16, 62
RsaNI GTAC 2 cut(s) 15, 61
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 210
Sau96I GGNCC 3 cut(s) 139, 264, 350
SduI GDGCHC 1 cut(s) 204
SetI ASST 8 cut(s) 34, 95, 167, 266, 309, 349, 355, 367
SinI GGWCC 2 cut(s) 264, 350
Sse9I AATT 2 cut(s) 152, 318
SspI AATATT 1 cut(s) 279
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 3 cut(s) 19, 187, 299
TasI AATT 2 cut(s) 152, 318
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 40, 165, 300
Van91I CCANNNNNTGG 1 cut(s) 168
VneI GTGCAC 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 264, 350
XmnI GAANNNNTTC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.