RLG00000023498

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
24632260 .. 24633029
770 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023498

Sequence Viewer

Length: 609 bp
ATGCTGAGAACGAAACGAATGAGCCGGTGCAGGAACAATGCAAAGTTGATGGACCTACCCATTGATATCCTCATCAACATCCTTTTGAGACTGCCGGCAAAATCACTTTGCTGCGCACAATGCTTTTGTAAAACCCTGCTTCACATAGTTGAAGCTCGTTCTTTTGCAACACTAGTGCATCTGCGCTTGCTTACTACTGCTTCTGATGCATTCGCTGAAGTGCTTCAACTTTTGCTTCTTAATGTTGCTCAAGATGGTGACAATGGAAGCTTAATAACGATCTCTCCATCGCAGATATATGATGGCAATGACTTGACAAAAAGCAGACATGCCATTGTCTCAAAGATTGCATCCTGCCGTTATGATTACAATGTTGGTTTTGTTTTCTGCCACTTGTTCTTCTTTAAGGACAAAAAGTATGATCGAGGTCCATGCTTCATTTTCAACCCTCTCAGGGGAGAAGTTCTCATGCTCCCAACGAGTAAGGTCCAAGTTCCACGCTCTTGTAGAAATATGCTGTTCACAGATTGGTACGGCATGGGTTTTGATGATATAACCAGCACCTACAAGATTGTTCGTGTTTCAGAAAAGGGAAAATTTCAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

203

Amino Acids

23.06

Weight (kDa)

9.36

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 53 4.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 115
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 2 cut(s) 454, 455
AgsI TTSAA 3 cut(s) 152, 227, 445
AhlI ACTAGT 1 cut(s) 172
AluBI AGCT 2 cut(s) 155, 270
AluI AGCT 2 cut(s) 155, 270
Alw26I GTCTC 2 cut(s) 82, 343
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 596
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 2 cut(s) 116, 186
AspS9I GGNCC 3 cut(s) 52, 428, 487
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 3 cut(s) 52, 428, 487
BbvI GCAGC 1 cut(s) 98
BccI CCATC 4 cut(s) 43, 248, 295, 296
BceAI ACGGC 2 cut(s) 342, 550
BcgI CGANNNNNNTGC 2 cut(s) 414, 448
BcoDI GTCTC 2 cut(s) 82, 343
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme18I GGWCC 3 cut(s) 52, 428, 487
BmgT120I GGNCC 3 cut(s) 52, 428, 487
BmsI GCATC 3 cut(s) 187, 196, 359
BplI GAGNNNNNCTC 2 cut(s) 450, 482
BpuEI CTTGAG 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 455
Bse118I RCCGGY 2 cut(s) 24, 94
Bse3DI GCAATG 1 cut(s) 313
BseGI GGATG 2 cut(s) 78, 350
BseLI CCNNNNNNNGG 2 cut(s) 454, 455
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 25, 95
BslI CCNNNNNNNGG 2 cut(s) 454, 455
BsmAI GTCTC 2 cut(s) 82, 343
BsmI GAATGC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 279, 421
BspCNI CTCAG 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 313
BsrFI RCCGGY 2 cut(s) 24, 94
BssAI RCCGGY 2 cut(s) 24, 94
BssMI GATC 2 cut(s) 279, 421
BstC8I GCNNGC 2 cut(s) 96, 188
BstDEI CTNAG 2 cut(s) 5, 452
BstF5I GGATG 2 cut(s) 78, 350
BstHHI GCGC 2 cut(s) 116, 186
BstKTI GATC 2 cut(s) 282, 424
BstMAI GTCTC 2 cut(s) 82, 343
BstMBI GATC 2 cut(s) 279, 421
BstMWI GCNNNNNNNGC 2 cut(s) 120, 206
BstNSI RCATGY 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 78, 350
Cac8I GCNNGC 2 cut(s) 96, 188
CfoI GCGC 2 cut(s) 116, 186
Cfr10I RCCGGY 2 cut(s) 24, 94
Cfr13I GGNCC 3 cut(s) 52, 428, 487
Csp6I GTAC 1 cut(s) 532
CviAII CATG 4 cut(s) 329, 432, 469, 538
CviJI RGCY 3 cut(s) 24, 155, 270
CviKI_1 RGCY 3 cut(s) 24, 155, 270
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 2 cut(s) 5, 452
DpnI GATC 2 cut(s) 281, 423
DpnII GATC 2 cut(s) 279, 421
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 52, 428, 487
Eco57I CTGAAG 1 cut(s) 237
EcoRV GATATC 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 211
FaeI CATG 4 cut(s) 332, 435, 472, 541
FatI CATG 4 cut(s) 328, 431, 468, 537
Fnu4HI GCNGC 1 cut(s) 112
FokI GGATG 2 cut(s) 65, 337
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 1 cut(s) 173
FspI TGCGCA 1 cut(s) 115
GlaI GCGC 2 cut(s) 115, 185
GluI GCNGC 1 cut(s) 112
HapII CCGG 2 cut(s) 25, 95
HhaI GCGC 2 cut(s) 116, 186
Hin1II CATG 4 cut(s) 332, 435, 472, 541
Hin6I GCGC 2 cut(s) 114, 184
HinP1I GCGC 2 cut(s) 114, 184
HindIII AAGCTT 1 cut(s) 268
HpaII CCGG 2 cut(s) 25, 95
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 3 cut(s) 205, 586, 603
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 522
HpyCH4V TGCA 6 cut(s) 30, 41, 167, 178, 209, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 206
HpyF3I CTNAG 2 cut(s) 5, 452
Hsp92II CATG 4 cut(s) 332, 435, 472, 541
HspAI GCGC 2 cut(s) 114, 184
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 279, 421
LmnI GCTCC 1 cut(s) 477
LpnPI CCDG 7 cut(s) 16, 38, 108, 149, 367, 439, 571
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 3 cut(s) 187, 196, 359
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 257
MalI GATC 2 cut(s) 281, 423
MboI GATC 2 cut(s) 279, 421
MboII GAAGA 1 cut(s) 391
MluCI AATT 1 cut(s) 596
MnlI CCTC 3 cut(s) 80, 419, 459
Mph1103I ATGCAT 1 cut(s) 211
MroNI GCCGGC 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 3 cut(s) 240, 272, 405
MspI CCGG 2 cut(s) 25, 95
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 120, 206
NaeI GCCGGC 1 cut(s) 96
NdeII GATC 2 cut(s) 279, 421
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 4 cut(s) 332, 435, 472, 541
NmuCI GTSAC 1 cut(s) 257
NsbI TGCGCA 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 332
PctI GAATGC 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 113
PspPI GGNCC 3 cut(s) 52, 428, 487
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
SaqAI TTAA 3 cut(s) 240, 272, 405
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 2 cut(s) 279, 421
Sau96I GGNCC 3 cut(s) 52, 428, 487
SetI ASST 6 cut(s) 57, 157, 272, 430, 489, 566
SfaNI GCATC 3 cut(s) 187, 196, 359
SinI GGWCC 3 cut(s) 52, 428, 487
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 172
Sse9I AATT 1 cut(s) 596
SspMI CTAG 1 cut(s) 173
TaqI TCGA 1 cut(s) 424
TasI AATT 1 cut(s) 596
Tru1I TTAA 3 cut(s) 240, 272, 405
Tru9I TTAA 3 cut(s) 240, 272, 405
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 427
VpaK11BI GGWCC 3 cut(s) 52, 428, 487
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 173
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.