Rroxscaffold_7G00211790

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000125
Physical Location & Seq
Forward (+)
62197480 .. 62199760
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211790.1

Sequence Viewer

Length: 762 bp
ATGGGAGAAGTTCTACGGCTTCCGGCTAGTAAGGTGCCAATCCCAGCCTCTATTAGATGTCGCCGTGAGCTTTTTGACTGGCTTGCTATGGGATTTGATGACACAACCGGCACGCACAAGATTCTTCGTGTTTGCGGTAATTCACAGTACAAGAATTGCCTGGTGGCCCAAGTACTTGTATTGGGTACAGATTCATGGCGAGAGATACGTGCAGTTTCTCCTTGTAATTTGAGCCACAAAAATGCGTCTGCATGTGGAGACATGCATTGGGTGATTGACAAAAAATCGAGAACTAGAGGAAGGGGAGAAAGTAATATAGTTTCCTTCGACTTCAAGAAAGAGGAGTTTTATTGGACTTCTCATCCCAAATTAAGAAGTCAGTTTTCCAACTTGAATTTGGTTAATCTGAAAGGATGCTTAGCGATTGTGGATGCTAGGTTACATATCCATGGCTTGTTCATCGAGATTTGGGTGTTGAAAAAGTATGAAGTGAAAGAGTGGGTGCGAGAGTACTGCACAGAAATCAAATTTGTGTTTCCTTGTTTTATGGCTAGTTTTGGTGAATGGGAACATGGTATATTTTTCAAAGATGCAATTAGCAGGGGGTTTCCGAACAGAGCTAGTGCAATGTTTTTGGATCTAAGAGGTAGTAGTGTTCAAAGTGGAACTGGTGAAGTGTCCTATAACATTAATGCAGAACTGGACTATCATCAGCTATACTGGGGGCCTAATTTCCCTAAAACATTACGGCAATTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

253

Amino Acids

29.08

Weight (kDa)

8.99

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 21 - 168 3.5e-15 F-box associated beta propeller domain
FBA_3 PF08268 28 - 172 2.2e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 645
AcsI RAATTY 2 cut(s) 394, 527
AfaI GTAC 4 cut(s) 149, 174, 187, 512
AgsI TTSAA 5 cut(s) 334, 394, 478, 586, 659
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 3 cut(s) 70, 620, 715
AluI AGCT 3 cut(s) 70, 620, 715
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 645
AoxI GGCC 2 cut(s) 165, 725
ApoI RAATTY 2 cut(s) 394, 527
AseI ATTAAT 1 cut(s) 690
AspS9I GGNCC 2 cut(s) 166, 725
AsuHPI GGTGA 3 cut(s) 283, 572, 683
BanI GGYRCC 1 cut(s) 34
BceAI ACGGC 2 cut(s) 32, 48
BcgI CGANNNNNNTGC 2 cut(s) 495, 529
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 5 cut(s) 27, 294, 435, 552, 621
BlpI GCTNAGC 1 cut(s) 418
BmcAI AGTACT 2 cut(s) 174, 512
Bme1390I CCNGG 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 166, 725
BmiI GGNNCC 2 cut(s) 36, 726
BmrFI CCNGG 1 cut(s) 161
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 3 cut(s) 404, 421, 580
BmuI ACTGGG 1 cut(s) 730
Bpu1102I GCTNAGC 1 cut(s) 418
BsaAI YACGTR 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 448
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 4 cut(s) 83, 673, 705, 725
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 3 cut(s) 361, 419, 436
BseMI GCAATG 1 cut(s) 633
BseNI ACTGG 4 cut(s) 83, 673, 705, 725
BseRI GAGGAG 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 43
BsgI GTGCAG 2 cut(s) 231, 499
BshFI GGCC 2 cut(s) 167, 727
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 2 cut(s) 23, 108
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 2 cut(s) 167, 727
Bsp143I GATC 1 cut(s) 637
Bsp1720I GCTNAGC 1 cut(s) 418
Bsp19I CCATGG 1 cut(s) 448
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 167, 727
BspLI GGNNCC 2 cut(s) 36, 726
BspPI GGATC 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 4 cut(s) 83, 673, 705, 725
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 1 cut(s) 637
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 84, 113
BstDEI CTNAG 2 cut(s) 418, 641
BstDSI CCRYGG 1 cut(s) 448
BstF5I GGATG 3 cut(s) 361, 419, 436
BstKTI GATC 1 cut(s) 640
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 1 cut(s) 637
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 2 cut(s) 255, 265
BstSCI CCNGG 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 2 cut(s) 167, 727
BtgI CCRYGG 1 cut(s) 448
BtsCI GGATG 3 cut(s) 361, 419, 436
Cac8I GCNNGC 2 cut(s) 84, 113
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 166, 725
CseI GACGC 1 cut(s) 234
Csp6I GTAC 4 cut(s) 148, 173, 186, 511
CviAII CATG 5 cut(s) 195, 252, 262, 449, 572
CviQI GTAC 4 cut(s) 148, 173, 186, 511
DdeI CTNAG 2 cut(s) 418, 641
DpnI GATC 1 cut(s) 639
DpnII GATC 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 448
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 5 cut(s) 198, 255, 265, 452, 575
FatI CATG 5 cut(s) 194, 251, 261, 448, 571
FokI GGATG 3 cut(s) 348, 426, 443
FspBI CTAG 5 cut(s) 27, 294, 435, 552, 621
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 2 cut(s) 167, 727
HapII CCGG 2 cut(s) 23, 108
HgaI GACGC 1 cut(s) 234
Hin1II CATG 5 cut(s) 198, 255, 265, 452, 575
HinfI GANTC 2 cut(s) 121, 191
HpaII CCGG 2 cut(s) 23, 108
HphI GGTGA 3 cut(s) 283, 572, 683
Hpy188I TCNGA 2 cut(s) 408, 612
Hpy188III TCNNGA 3 cut(s) 288, 334, 463
HpyAV CCTTC 2 cut(s) 294, 334
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 7 cut(s) 212, 251, 265, 516, 593, 626, 695
HpyF3I CTNAG 2 cut(s) 418, 641
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 5 cut(s) 198, 255, 265, 452, 575
Kzo9I GATC 1 cut(s) 637
LweI GCATC 3 cut(s) 404, 421, 580
MaeI CTAG 5 cut(s) 27, 294, 435, 552, 621
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 438
MalI GATC 1 cut(s) 639
MboI GATC 1 cut(s) 637
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 637
MluCI AATT 9 cut(s) 139, 154, 226, 368, 394, 527, 594, 730, 752
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 4 cut(s) 58, 290, 334, 638
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 3 cut(s) 371, 402, 690
MslI CAYNNNNRTG 2 cut(s) 240, 447
MspI CCGG 2 cut(s) 23, 108
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 448
NdeII GATC 1 cut(s) 637
NlaIII CATG 5 cut(s) 198, 255, 265, 452, 575
NlaIV GGNNCC 2 cut(s) 36, 726
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 2 cut(s) 255, 265
PfeI GAWTC 2 cut(s) 121, 191
Ppu21I YACGTR 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 690
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 36, 726
PspPI GGNCC 2 cut(s) 166, 725
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 4 cut(s) 149, 174, 187, 512
RsaNI GTAC 4 cut(s) 148, 173, 186, 511
RseI CAYNNNNRTG 2 cut(s) 240, 447
SaqAI TTAA 3 cut(s) 371, 402, 690
Sau3AI GATC 1 cut(s) 637
Sau96I GGNCC 2 cut(s) 166, 725
ScaI AGTACT 2 cut(s) 174, 512
ScrFI CCNGG 1 cut(s) 161
SetI ASST 7 cut(s) 36, 72, 211, 440, 622, 649, 717
SfaNI GCATC 3 cut(s) 404, 421, 580
SmiMI CAYNNNNRTG 2 cut(s) 240, 447
Sse9I AATT 9 cut(s) 139, 154, 226, 368, 394, 527, 594, 730, 752
SsiI CCGC 1 cut(s) 135
SspMI CTAG 5 cut(s) 27, 294, 435, 552, 621
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 1 cut(s) 211
TaqI TCGA 3 cut(s) 287, 327, 462
TasI AATT 9 cut(s) 139, 154, 226, 368, 394, 527, 594, 730, 752
TatI WGTACW 3 cut(s) 147, 172, 510
TfiI GAWTC 2 cut(s) 121, 191
Tru1I TTAA 3 cut(s) 371, 402, 690
Tru9I TTAA 3 cut(s) 371, 402, 690
TspDTI ATGAA 3 cut(s) 183, 448, 501
VspI ATTAAT 1 cut(s) 690
XapI RAATTY 2 cut(s) 394, 527
XceI RCATGY 2 cut(s) 255, 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XspI CTAG 5 cut(s) 27, 294, 435, 552, 621
ZrmI AGTACT 2 cut(s) 174, 512
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.